Wall clock time and date at job start Tue Mar 31 2020 20:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50708 * 109.46593 * 2 1 4 4 C 1.38350 * 120.26974 * 270.01576 * 3 2 1 5 5 N 1.31883 * 121.18437 * 179.97438 * 4 3 2 6 6 C 1.32238 * 121.79984 * 359.74604 * 5 4 3 7 7 O 1.35422 * 119.79856 * 180.28992 * 6 5 4 8 8 C 1.40282 * 120.39752 * 0.54566 * 6 5 4 9 9 C 1.47522 * 120.59710 * 179.72626 * 8 6 5 10 10 O 1.21595 * 119.99723 * 359.71556 * 9 8 6 11 11 N 1.34772 * 120.00139 * 179.72564 * 9 8 6 12 12 C 1.46502 * 119.99816 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46533 * 34.96889 * 12 11 9 14 14 C 1.53042 * 109.45765 * 274.99107 * 12 11 9 15 15 C 1.53195 * 109.31221 * 178.61390 * 14 12 11 16 16 N 1.46931 * 108.77268 * 54.64120 * 15 14 12 17 17 C 1.36932 * 120.63331 * 126.37097 * 16 15 14 18 18 H 1.08003 * 119.99591 * 332.44263 * 17 16 15 19 19 C 1.38809 * 120.00247 * 152.17596 * 17 16 15 20 20 N 1.31621 * 119.99786 * 343.15799 * 19 17 16 21 21 Si 1.86802 * 120.00004 * 163.16769 * 19 17 16 22 22 H 1.48505 * 109.47115 * 59.99777 * 21 19 17 23 23 H 1.48499 * 109.46750 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47060 * 299.99551 * 21 19 17 25 25 C 1.46931 * 118.73527 * 306.63721 * 16 15 14 26 26 C 1.52767 * 109.00631 * 53.31459 * 25 16 15 27 27 H 1.08996 * 109.55719 * 185.54870 * 26 25 16 28 28 O 1.42902 * 109.35964 * 65.49543 * 26 25 16 29 29 C 1.38338 * 120.26776 * 90.00085 * 3 2 1 30 30 H 1.09000 * 109.47365 * 299.99924 * 1 2 3 31 31 H 1.08996 * 109.46845 * 59.99976 * 1 2 3 32 32 H 1.08999 * 109.46507 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47078 * 239.99735 * 2 1 3 34 34 H 1.08996 * 109.46847 * 119.99466 * 2 1 3 35 35 H 1.08004 * 119.40872 * 359.97438 * 4 3 2 36 36 H 0.96707 * 114.00006 * 270.24723 * 7 6 5 37 37 H 0.96998 * 120.00425 * 359.97438 * 11 9 8 38 38 H 1.08999 * 109.49663 * 58.66969 * 14 12 11 39 39 H 1.09002 * 109.52556 * 298.58180 * 14 12 11 40 40 H 1.08990 * 109.58858 * 294.85463 * 15 14 12 41 41 H 1.08998 * 109.58864 * 174.42129 * 15 14 12 42 42 H 0.97000 * 119.99951 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.58466 * 173.14446 * 25 16 15 44 44 H 1.08995 * 109.58659 * 293.56937 * 25 16 15 45 45 H 0.96703 * 113.99756 * 60.15653 * 28 26 25 46 46 H 1.08001 * 120.82982 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2644 2.0786 -1.1949 5 7 2.7034 3.3220 -1.2159 6 6 2.9366 3.9976 -0.1033 7 8 3.3814 5.2748 -0.1722 8 6 2.7312 3.3974 1.1479 9 6 2.9958 4.1449 2.3918 10 8 3.4005 5.2903 2.3384 11 7 2.7890 3.5584 3.5874 12 6 3.0523 4.3006 4.8228 13 1 2.7988 5.3506 4.6766 14 6 4.5344 4.1794 5.1843 15 6 4.8130 4.9851 6.4572 16 7 3.8956 4.5340 7.5126 17 6 4.3765 4.1301 8.7294 18 1 5.3710 3.7160 8.8065 19 6 3.5880 4.2581 9.8646 20 7 2.5371 5.0504 9.8500 21 14 4.0185 3.3060 11.4130 22 1 5.3755 3.6963 11.8729 23 1 3.0282 3.6152 12.4755 24 1 3.9942 1.8501 11.1217 25 6 2.4527 4.5189 7.2353 26 6 2.2003 3.7237 5.9556 27 1 1.1458 3.7891 5.6874 28 8 2.5547 2.3560 6.1700 29 6 2.2647 2.0784 1.1948 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 2.0829 1.5644 -2.1272 36 1 4.3449 5.3551 -0.1946 37 1 2.4659 2.6448 3.6301 38 1 5.1413 4.5691 4.3671 39 1 4.7833 3.1320 5.3550 40 1 4.6517 6.0450 6.2613 41 1 5.8430 4.8225 6.7745 42 1 1.9863 5.1401 10.6433 43 1 1.9260 4.0488 8.0659 44 1 2.0951 5.5401 7.1043 45 1 2.0529 1.9257 6.8759 46 1 2.0904 1.5863 2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090681012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:05 Heat of formation + Delta-G solvation = -96.835491 kcal Electronic energy + Delta-G solvation = -29507.333722 eV Core-core repulsion = 25396.680886 eV Total energy + Delta-G solvation = -4110.652836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.02103 -40.70545 -39.32465 -38.35306 -36.49348 -35.74978 -35.19625 -34.20618 -33.21405 -31.07492 -30.69061 -30.03217 -27.18408 -25.74047 -24.99106 -24.16516 -23.68514 -22.65658 -21.44075 -20.96648 -19.92469 -19.18936 -18.36217 -18.32130 -17.35188 -17.11048 -17.03096 -16.63455 -16.04031 -15.91709 -15.64820 -15.44025 -15.38060 -15.01358 -14.76898 -14.62171 -14.36355 -14.21357 -13.99085 -13.77961 -13.65909 -13.14324 -13.01991 -12.81337 -12.76801 -12.62092 -12.39411 -12.34381 -12.25466 -12.03281 -11.84875 -11.81752 -11.47067 -11.18968 -11.00878 -10.77423 -10.57777 -10.45486 -10.10196 -9.79268 -8.67980 -7.87365 -5.31629 -0.50526 0.00980 1.50158 1.50841 1.58561 1.76435 1.98489 2.47806 2.52433 2.73470 3.24501 3.37619 3.43223 3.60350 3.68058 3.69621 3.82658 3.86500 3.99777 4.14568 4.28231 4.33686 4.39785 4.50831 4.54552 4.59420 4.67908 4.72451 4.83263 4.87021 4.92692 4.94593 5.05859 5.17211 5.18523 5.34335 5.37943 5.41198 5.44321 5.50727 5.55664 5.65301 6.36999 6.44666 6.54483 6.78557 6.90477 7.14030 7.15350 7.82631 8.35807 9.19141 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.002790 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.634588 B =10032.771957 C =11040.944223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 C -0.141 4.141 4 C 0.150 3.850 5 N -0.526 5.526 6 C 0.344 3.656 7 O -0.481 6.481 8 C -0.213 4.213 9 C 0.557 3.443 10 O -0.560 6.560 11 N -0.700 5.700 12 C 0.170 3.830 13 H 0.073 0.927 14 C -0.118 4.118 15 C 0.145 3.855 16 N -0.598 5.598 17 C -0.256 4.256 18 H 0.062 0.938 19 C -0.046 4.046 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.282 1.282 23 H -0.295 1.295 24 H -0.274 1.274 25 C 0.150 3.850 26 C 0.092 3.908 27 H 0.069 0.931 28 O -0.560 6.560 29 C -0.024 4.024 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.198 0.802 36 H 0.415 0.585 37 H 0.412 0.588 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.010 0.990 41 H 0.057 0.943 42 H 0.251 0.749 43 H 0.074 0.926 44 H 0.002 0.998 45 H 0.387 0.613 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.992 -13.898 -21.089 25.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.143 4.143 4 C -0.008 4.008 5 N -0.245 5.245 6 C 0.165 3.835 7 O -0.290 6.290 8 C -0.219 4.219 9 C 0.344 3.656 10 O -0.440 6.440 11 N -0.352 5.352 12 C 0.065 3.935 13 H 0.091 0.909 14 C -0.159 4.159 15 C 0.018 3.982 16 N -0.321 5.321 17 C -0.386 4.386 18 H 0.080 0.920 19 C -0.241 4.241 20 N -0.582 5.582 21 Si 0.796 3.204 22 H -0.208 1.208 23 H -0.221 1.221 24 H -0.200 1.200 25 C 0.023 3.977 26 C 0.031 3.969 27 H 0.087 0.913 28 O -0.367 6.367 29 C -0.050 4.050 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.214 0.786 36 H 0.276 0.724 37 H 0.250 0.750 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.028 0.972 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.020 0.980 45 H 0.236 0.764 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.785 -12.280 -22.211 25.660 hybrid contribution 0.036 -0.484 2.414 2.462 sum -3.748 -12.764 -19.797 23.851 Atomic orbital electron populations 1.21800 0.94172 1.02866 1.01966 1.20567 0.96288 0.89160 1.05269 1.21179 1.00764 0.99773 0.92606 1.23309 0.90052 0.87753 0.99685 1.67388 1.15888 1.10171 1.31023 1.19353 0.92819 0.84398 0.86955 1.84672 1.29151 1.19759 1.95419 1.21031 1.10648 0.96852 0.93403 1.18229 0.77610 0.85987 0.83760 1.90798 1.46887 1.18737 1.87555 1.45842 1.67052 1.18000 1.04305 1.20728 0.95527 0.95272 0.81966 0.90900 1.22069 0.95304 1.01226 0.97252 1.20970 0.94181 0.94616 0.88396 1.44079 1.01683 1.75407 1.10885 1.19401 1.01041 1.33265 0.84919 0.91986 1.25710 0.99087 0.99304 1.00040 1.70161 1.20018 1.38579 1.29445 0.85341 0.76961 0.79014 0.79069 1.20819 1.22147 1.19991 1.21233 0.85395 0.96111 0.94917 1.22411 0.96455 0.83411 0.94647 0.91340 1.86307 1.67883 1.23117 1.59365 1.21934 0.91416 0.90932 1.00687 0.93347 0.92512 0.90690 0.88203 0.89430 0.78570 0.72351 0.75019 0.92361 0.91460 0.97170 0.92494 0.94008 0.90755 0.98015 0.76375 0.82020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.90 71.99 0.71 -0.34 16 2 C -0.08 -0.48 6.08 29.85 0.18 -0.30 16 3 C -0.14 -1.79 5.14 -19.81 -0.10 -1.89 16 4 C 0.15 2.19 10.84 84.71 0.92 3.10 16 5 N -0.53 -11.87 10.37 -308.00 -3.19 -15.07 16 6 C 0.34 8.96 7.77 85.13 0.66 9.62 16 7 O -0.48 -13.48 11.66 -66.35 -0.77 -14.26 16 8 C -0.21 -5.19 5.90 -19.91 -0.12 -5.31 16 9 C 0.56 16.89 7.74 86.69 0.67 17.57 16 10 O -0.56 -21.23 14.85 16.80 0.25 -20.98 16 11 N -0.70 -19.52 5.00 -445.58 -2.23 -21.75 16 12 C 0.17 5.85 2.20 45.02 0.10 5.95 16 13 H 0.07 2.84 7.57 -2.39 -0.02 2.83 16 14 C -0.12 -4.36 5.51 30.67 0.17 -4.19 16 15 C 0.14 6.28 6.52 86.36 0.56 6.84 16 16 N -0.60 -29.42 2.94 -699.91 -2.06 -31.48 16 17 C -0.26 -13.76 9.58 84.03 0.81 -12.96 16 18 H 0.06 3.31 7.88 -2.91 -0.02 3.28 16 19 C -0.05 -2.49 4.92 84.86 0.42 -2.07 16 20 N -0.94 -53.31 11.18 21.65 0.24 -53.07 16 21 Si 0.97 43.45 29.59 68.60 2.03 45.48 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 C 0.15 6.82 4.91 86.22 0.42 7.24 16 26 C 0.09 3.17 3.37 30.53 0.10 3.27 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 O -0.56 -17.75 12.08 -148.98 -1.80 -19.55 16 29 C -0.02 -0.40 9.31 22.72 0.21 -0.19 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.10 0.28 8.09 -2.39 -0.02 0.26 16 34 H 0.09 0.47 8.09 -2.39 -0.02 0.45 16 35 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.42 8.46 9.06 -74.05 -0.67 7.78 16 37 H 0.41 9.24 6.36 -92.71 -0.59 8.65 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 2.53 7.61 -2.39 -0.02 2.51 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 42 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 43 H 0.07 3.70 6.05 -2.39 -0.01 3.68 16 44 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.39 10.51 9.08 -74.06 -0.67 9.83 16 46 H 0.16 1.97 6.52 -2.91 -0.02 1.95 16 Total: -1.00 -73.24 376.31 -2.71 -75.95 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: -0.89 Total: 28.36 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 5.72 Total: 26.35 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -7.24 Total: -121.36 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: -2.32 Total: -54.79 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -73.24 -2.71 -75.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090681012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.886 kcal (2) G-P(sol) polarization free energy of solvation -73.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds