Wall clock time and date at job start Tue Mar 31 2020 19:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29935 * 125.37786 * 2 1 4 4 C 1.36071 * 108.47471 * 180.16996 * 3 2 1 5 5 C 1.47422 * 126.44734 * 179.82955 * 4 3 2 6 6 O 1.21612 * 120.00221 * 173.30881 * 5 4 3 7 7 N 1.34775 * 119.99877 * 353.31113 * 5 4 3 8 8 C 1.46926 * 120.62910 * 175.09020 * 7 5 4 9 9 C 1.53190 * 108.77835 * 233.58163 * 8 7 5 10 10 C 1.53042 * 109.31437 * 305.36758 * 9 8 7 11 11 O 1.42896 * 109.45928 * 181.37894 * 10 9 8 12 12 C 1.42902 * 113.99790 * 149.99917 * 11 10 9 13 13 C 1.53492 * 114.20764 * 210.00282 * 12 11 10 14 14 N 1.47066 * 87.98685 * 220.14873 * 13 12 11 15 15 C 1.36941 * 136.06076 * 206.86073 * 14 13 12 16 16 H 1.08003 * 119.99531 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00319 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99880 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00145 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47193 * 60.00320 * 19 17 15 21 21 H 1.48501 * 109.47224 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47152 * 300.00034 * 19 17 15 23 23 C 1.47063 * 87.88537 * 27.11898 * 14 13 12 24 24 C 1.53040 * 109.53583 * 61.36139 * 10 9 8 25 25 C 1.46927 * 120.63496 * 355.06742 * 7 5 4 26 26 C 1.36093 * 107.10264 * 359.56270 * 4 3 2 27 27 O 1.34051 * 125.37757 * 179.68866 * 2 1 3 28 28 H 1.08998 * 109.47067 * 180.34407 * 1 2 3 29 29 H 1.09004 * 109.47123 * 300.34040 * 1 2 3 30 30 H 1.08997 * 109.47432 * 60.33979 * 1 2 3 31 31 H 1.09001 * 109.58657 * 113.79827 * 8 7 5 32 32 H 1.09000 * 109.70997 * 353.44690 * 8 7 5 33 33 H 1.09000 * 109.50259 * 185.41476 * 9 8 7 34 34 H 1.09007 * 109.49462 * 65.32164 * 9 8 7 35 35 H 1.08994 * 109.45938 * 301.35628 * 10 9 8 36 36 H 1.08997 * 113.28096 * 343.07134 * 12 11 10 37 37 H 1.08992 * 113.47142 * 105.36884 * 13 12 11 38 38 H 1.09001 * 113.52000 * 334.93340 * 13 12 11 39 39 H 0.96996 * 120.00036 * 179.97438 * 18 17 15 40 40 H 1.09004 * 113.46707 * 87.65739 * 23 14 13 41 41 H 1.09003 * 113.47321 * 218.10070 * 23 14 13 42 42 H 1.09003 * 109.49994 * 58.58751 * 24 10 9 43 43 H 1.08998 * 109.49820 * 178.68606 * 24 10 9 44 44 H 1.09003 * 109.58527 * 246.20811 * 25 7 5 45 45 H 1.09003 * 109.58136 * 6.47861 * 25 7 5 46 46 H 1.07999 * 126.52179 * 180.23672 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6638 -0.0038 5 6 4.7439 1.5438 -0.0087 6 8 5.8566 1.0677 0.1109 7 7 4.5921 2.8759 -0.1457 8 6 5.7494 3.7755 -0.0452 9 6 5.4475 4.8525 1.0016 10 6 4.1356 5.5539 0.6423 11 8 3.8673 6.5808 1.5990 12 6 3.1346 7.6889 1.0722 13 6 3.4402 9.0282 1.7568 14 7 2.0042 9.3361 1.6798 15 6 1.2410 10.4716 1.6209 16 1 1.7153 11.4419 1.6262 17 6 -0.1422 10.3755 1.5534 18 7 -0.7201 9.1929 1.5464 19 14 -1.1832 11.9243 1.4724 20 1 -0.8182 12.7033 0.2620 21 1 -2.6195 11.5525 1.4080 22 1 -0.9396 12.7483 2.6835 23 6 1.7482 7.8881 1.7003 24 6 2.9921 4.5368 0.6519 25 6 3.2663 3.4563 -0.3988 26 6 3.5659 -0.6971 0.0038 27 8 2.2831 -1.0930 0.0059 28 1 -0.3633 -1.0276 0.0062 29 1 -0.3633 0.5191 0.8869 30 1 -0.3634 0.5085 -0.8930 31 1 5.9315 4.2460 -1.0114 32 1 6.6302 3.2089 0.2570 33 1 6.2574 5.5817 1.0174 34 1 5.3553 4.3892 1.9840 35 1 4.2201 5.9955 -0.3506 36 1 3.1421 7.7316 -0.0169 37 1 4.0595 9.6924 1.1541 38 1 3.8070 8.9212 2.7777 39 1 -1.6866 9.1257 1.4996 40 1 1.6642 7.4763 2.7061 41 1 0.9289 7.5827 1.0495 42 1 2.9229 4.0765 1.6376 43 1 2.0545 5.0413 0.4188 44 1 3.2458 3.9007 -1.3939 45 1 2.5073 2.6768 -0.3312 46 1 4.4361 -1.3368 0.0069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093529938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:52 Heat of formation + Delta-G solvation = 20.358543 kcal Electronic energy + Delta-G solvation = -29006.513127 eV Core-core repulsion = 24900.942206 eV Total energy + Delta-G solvation = -4105.570921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.84092 -40.21454 -38.75095 -37.37209 -35.63380 -35.20997 -32.70620 -32.19444 -31.44552 -31.02035 -28.28687 -27.50582 -25.63622 -24.56589 -23.84587 -23.32548 -22.73684 -21.99103 -20.85899 -19.78194 -19.25086 -17.90627 -17.29584 -17.11402 -16.75144 -16.27076 -16.13474 -15.33624 -14.95593 -14.73675 -14.54587 -14.39802 -14.17646 -13.79242 -13.72201 -13.70918 -13.54893 -13.14720 -13.01813 -12.88422 -12.43317 -12.08013 -11.93008 -11.70745 -11.62871 -11.30767 -11.13948 -11.09958 -10.89504 -10.77655 -10.56870 -10.43317 -10.31183 -10.04714 -9.80882 -9.44384 -9.38673 -8.81306 -8.78731 -8.55008 -6.89406 -5.77426 -3.10520 0.76574 1.60814 2.19207 2.73339 3.01751 3.39514 3.42957 3.44590 3.47067 4.00638 4.25965 4.41199 4.49086 4.79092 4.86502 4.96681 4.98528 5.05969 5.08703 5.17397 5.26480 5.27703 5.31820 5.33642 5.47097 5.48903 5.53647 5.56310 5.65603 5.68594 5.78553 5.90531 5.98071 6.15830 6.29052 6.37989 6.47810 6.59823 6.63153 6.68795 7.03845 7.13315 7.23356 7.26586 7.53084 7.89076 7.91219 7.99190 9.02876 9.68922 10.63274 11.40062 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.002557 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.513977 B =10947.498320 C =12625.599634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.204 3.796 3 N -0.457 5.457 4 C -0.065 4.065 5 C 0.602 3.398 6 O -0.544 6.544 7 N -0.590 5.590 8 C 0.114 3.886 9 C -0.130 4.130 10 C 0.091 3.909 11 O -0.370 6.370 12 C 0.030 3.970 13 C 0.118 3.882 14 N -0.606 5.606 15 C -0.217 4.217 16 H 0.082 0.918 17 C -0.008 4.008 18 N -0.919 5.919 19 Si 0.915 3.085 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.285 1.285 23 C 0.144 3.856 24 C -0.149 4.149 25 C 0.064 3.936 26 C 0.011 3.989 27 O -0.196 6.196 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.254 0.746 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.154 0.846 46 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 -21.990 -6.011 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.004 4.004 3 N -0.188 5.188 4 C -0.185 4.185 5 C 0.389 3.611 6 O -0.422 6.422 7 N -0.322 5.322 8 C -0.008 4.008 9 C -0.169 4.169 10 C 0.032 3.968 11 O -0.288 6.288 12 C -0.029 4.029 13 C -0.009 4.009 14 N -0.334 5.334 15 C -0.344 4.344 16 H 0.100 0.900 17 C -0.205 4.205 18 N -0.566 5.566 19 Si 0.745 3.255 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.018 3.982 24 C -0.188 4.188 25 C -0.058 4.058 26 C -0.063 4.063 27 O -0.082 6.082 28 H 0.109 0.891 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.170 0.830 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.864 -21.444 -5.775 23.245 hybrid contribution -0.407 0.369 -0.092 0.557 sum 6.458 -21.075 -5.867 22.810 Atomic orbital electron populations 1.20402 0.80616 1.05124 1.05865 1.26623 0.96807 0.78374 0.98618 1.70337 1.00903 1.28318 1.19274 1.21769 0.91980 0.93006 1.11706 1.16801 0.86088 0.81627 0.76583 1.90803 1.24644 1.74995 1.51803 1.47953 1.10091 1.05062 1.69055 1.21665 0.88922 0.90907 0.99300 1.21990 0.97696 0.97490 0.99682 1.22056 0.93662 0.88609 0.92441 1.87915 1.75009 1.29564 1.36281 1.24748 0.95211 0.85652 0.97254 1.22598 0.88570 0.91996 0.97737 1.45246 1.00505 1.02140 1.85533 1.18863 0.87699 0.83733 1.44111 0.90008 1.24822 0.96249 0.97074 1.02334 1.69833 1.09223 1.21395 1.56125 0.86151 0.79386 0.81945 0.77985 1.21014 1.21497 1.21111 1.22522 0.93323 0.84540 0.97853 1.22374 0.99788 0.96520 1.00077 1.23000 0.85097 0.99844 0.97838 1.25231 0.84843 0.95508 1.00678 1.84412 1.16728 1.37843 1.69197 0.89109 0.87808 0.87922 0.91078 0.88582 0.89886 0.90774 0.92409 0.89765 0.94090 0.94194 0.93564 0.95118 0.91121 0.91004 0.89835 0.92046 0.83023 0.75293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.20 1.70 8.30 -13.08 -0.11 1.59 16 3 N -0.46 -4.94 7.73 -7.65 -0.06 -5.00 16 4 C -0.07 -0.74 6.72 -83.02 -0.56 -1.30 16 5 C 0.60 7.93 7.69 -12.52 -0.10 7.83 16 6 O -0.54 -8.15 16.33 5.27 0.09 -8.07 16 7 N -0.59 -7.37 2.97 -174.04 -0.52 -7.89 16 8 C 0.11 1.29 6.41 -3.71 -0.02 1.27 16 9 C -0.13 -1.60 5.73 -26.61 -0.15 -1.75 16 10 C 0.09 1.30 2.56 -26.69 -0.07 1.23 16 11 O -0.37 -6.65 10.05 -35.23 -0.35 -7.01 16 12 C 0.03 0.60 4.61 -26.22 -0.12 0.48 16 13 C 0.12 2.57 8.52 -8.51 -0.07 2.50 16 14 N -0.61 -16.19 3.78 -184.81 -0.70 -16.89 16 15 C -0.22 -6.21 10.75 -15.06 -0.16 -6.37 16 16 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 17 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 18 N -0.92 -27.43 11.51 55.49 0.64 -26.79 16 19 Si 0.92 22.17 29.55 -169.99 -5.02 17.15 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.14 3.52 7.25 -8.51 -0.06 3.46 16 24 C -0.15 -2.06 5.69 -26.61 -0.15 -2.21 16 25 C 0.06 0.78 6.33 -3.71 -0.02 0.75 16 26 C 0.01 0.10 11.95 29.96 0.36 0.45 16 27 O -0.20 -1.63 10.73 6.51 0.07 -1.56 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.10 7.04 -51.93 -0.37 0.74 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.79 7.43 -51.93 -0.39 0.40 16 36 H 0.08 1.60 7.47 -51.93 -0.39 1.22 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.87 7.12 -51.93 -0.37 1.50 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.15 1.84 3.65 -77.91 -0.28 1.56 16 46 H 0.23 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -34.88 377.12 -7.97 -42.85 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.84 Total: -0.19 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -0.96 Total: 7.72 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.64 Total: -56.58 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.20 Total: -16.63 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.88 -7.97 -42.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093529938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.207 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds