Wall clock time and date at job start Tue Mar 31 2020 19:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29935 * 125.37786 * 2 1 4 4 C 1.36071 * 108.47471 * 180.16996 * 3 2 1 5 5 C 1.47422 * 126.44734 * 179.82955 * 4 3 2 6 6 O 1.21612 * 120.00221 * 173.30881 * 5 4 3 7 7 N 1.34775 * 119.99877 * 353.31113 * 5 4 3 8 8 C 1.46926 * 120.62910 * 175.09020 * 7 5 4 9 9 C 1.53190 * 108.77835 * 233.58163 * 8 7 5 10 10 C 1.53042 * 109.31437 * 305.36758 * 9 8 7 11 11 O 1.42896 * 109.45928 * 181.37894 * 10 9 8 12 12 C 1.42902 * 113.99790 * 149.99917 * 11 10 9 13 13 C 1.53492 * 114.20764 * 210.00282 * 12 11 10 14 14 N 1.47066 * 87.98685 * 220.14873 * 13 12 11 15 15 C 1.36941 * 136.06076 * 206.86073 * 14 13 12 16 16 H 1.08003 * 119.99531 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00319 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99880 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00145 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47193 * 60.00320 * 19 17 15 21 21 H 1.48501 * 109.47224 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47152 * 300.00034 * 19 17 15 23 23 C 1.47063 * 87.88537 * 27.11898 * 14 13 12 24 24 C 1.53040 * 109.53583 * 61.36139 * 10 9 8 25 25 C 1.46927 * 120.63496 * 355.06742 * 7 5 4 26 26 C 1.36093 * 107.10264 * 359.56270 * 4 3 2 27 27 O 1.34051 * 125.37757 * 179.68866 * 2 1 3 28 28 H 1.08998 * 109.47067 * 180.34407 * 1 2 3 29 29 H 1.09004 * 109.47123 * 300.34040 * 1 2 3 30 30 H 1.08997 * 109.47432 * 60.33979 * 1 2 3 31 31 H 1.09001 * 109.58657 * 113.79827 * 8 7 5 32 32 H 1.09000 * 109.70997 * 353.44690 * 8 7 5 33 33 H 1.09000 * 109.50259 * 185.41476 * 9 8 7 34 34 H 1.09007 * 109.49462 * 65.32164 * 9 8 7 35 35 H 1.08994 * 109.45938 * 301.35628 * 10 9 8 36 36 H 1.08997 * 113.28096 * 343.07134 * 12 11 10 37 37 H 1.08992 * 113.47142 * 105.36884 * 13 12 11 38 38 H 1.09001 * 113.52000 * 334.93340 * 13 12 11 39 39 H 0.96996 * 120.00036 * 179.97438 * 18 17 15 40 40 H 1.09004 * 113.46707 * 87.65739 * 23 14 13 41 41 H 1.09003 * 113.47321 * 218.10070 * 23 14 13 42 42 H 1.09003 * 109.49994 * 58.58751 * 24 10 9 43 43 H 1.08998 * 109.49820 * 178.68606 * 24 10 9 44 44 H 1.09003 * 109.58527 * 246.20811 * 25 7 5 45 45 H 1.09003 * 109.58136 * 6.47861 * 25 7 5 46 46 H 1.07999 * 126.52179 * 180.23672 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6638 -0.0038 5 6 4.7439 1.5438 -0.0087 6 8 5.8566 1.0677 0.1109 7 7 4.5921 2.8759 -0.1457 8 6 5.7494 3.7755 -0.0452 9 6 5.4475 4.8525 1.0016 10 6 4.1356 5.5539 0.6423 11 8 3.8673 6.5808 1.5990 12 6 3.1346 7.6889 1.0722 13 6 3.4402 9.0282 1.7568 14 7 2.0042 9.3361 1.6798 15 6 1.2410 10.4716 1.6209 16 1 1.7153 11.4419 1.6262 17 6 -0.1422 10.3755 1.5534 18 7 -0.7201 9.1929 1.5464 19 14 -1.1832 11.9243 1.4724 20 1 -0.8182 12.7033 0.2620 21 1 -2.6195 11.5525 1.4080 22 1 -0.9396 12.7483 2.6835 23 6 1.7482 7.8881 1.7003 24 6 2.9921 4.5368 0.6519 25 6 3.2663 3.4563 -0.3988 26 6 3.5659 -0.6971 0.0038 27 8 2.2831 -1.0930 0.0059 28 1 -0.3633 -1.0276 0.0062 29 1 -0.3633 0.5191 0.8869 30 1 -0.3634 0.5085 -0.8930 31 1 5.9315 4.2460 -1.0114 32 1 6.6302 3.2089 0.2570 33 1 6.2574 5.5817 1.0174 34 1 5.3553 4.3892 1.9840 35 1 4.2201 5.9955 -0.3506 36 1 3.1421 7.7316 -0.0169 37 1 4.0595 9.6924 1.1541 38 1 3.8070 8.9212 2.7777 39 1 -1.6866 9.1257 1.4996 40 1 1.6642 7.4763 2.7061 41 1 0.9289 7.5827 1.0495 42 1 2.9229 4.0765 1.6376 43 1 2.0545 5.0413 0.4188 44 1 3.2458 3.9007 -1.3939 45 1 2.5073 2.6768 -0.3312 46 1 4.4361 -1.3368 0.0069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093529938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:51 Heat of formation + Delta-G solvation = -4.095476 kcal Electronic energy + Delta-G solvation = -29007.573533 eV Core-core repulsion = 24900.942206 eV Total energy + Delta-G solvation = -4106.631327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.52904 -41.24569 -40.30356 -38.71205 -36.89615 -36.07547 -34.20104 -33.32272 -32.61122 -32.05764 -29.52722 -28.85372 -26.64644 -26.41592 -25.08464 -24.72694 -23.92903 -22.75276 -21.87114 -21.31879 -20.40949 -18.86073 -18.72484 -18.09258 -17.96239 -17.57175 -17.07567 -16.96609 -16.30644 -16.00036 -15.78678 -15.48464 -15.31871 -15.06990 -14.79975 -14.67880 -14.46662 -14.36403 -13.91587 -13.77650 -13.54265 -13.32244 -13.27380 -13.16694 -12.91201 -12.81659 -12.74248 -12.41464 -12.38786 -12.24627 -12.07047 -11.89206 -11.56713 -11.51026 -11.38132 -10.89121 -10.81526 -10.13085 -10.09289 -9.74350 -8.99323 -7.93005 -5.29170 0.03588 0.86975 1.46039 1.50502 1.56514 1.56574 1.85516 2.11100 2.40916 2.70234 2.80009 3.28106 3.45132 3.52077 3.74651 3.77101 3.79122 3.97331 4.07169 4.09605 4.16001 4.30355 4.36802 4.38627 4.47031 4.53402 4.58266 4.68205 4.70323 4.74426 4.76617 4.82671 4.86723 4.89891 4.94649 5.11064 5.13813 5.18154 5.22242 5.31658 5.34764 5.45773 5.69339 5.86503 6.16822 6.44058 6.46649 6.86712 6.93340 7.55354 8.55531 9.24443 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.002557 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.513977 B =10947.498320 C =12625.599634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.208 3.792 3 N -0.485 5.485 4 C -0.101 4.101 5 C 0.598 3.402 6 O -0.569 6.569 7 N -0.594 5.594 8 C 0.116 3.884 9 C -0.121 4.121 10 C 0.084 3.916 11 O -0.379 6.379 12 C 0.067 3.933 13 C 0.117 3.883 14 N -0.636 5.636 15 C -0.236 4.236 16 H 0.090 0.910 17 C -0.066 4.066 18 N -0.952 5.952 19 Si 0.987 3.013 20 H -0.272 1.272 21 H -0.292 1.292 22 H -0.278 1.278 23 C 0.141 3.859 24 C -0.142 4.142 25 C 0.071 3.929 26 C 0.031 3.969 27 O -0.193 6.193 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.251 0.749 40 H 0.009 0.991 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.156 0.844 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 -22.337 -7.093 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.000 4.000 3 N -0.216 5.216 4 C -0.219 4.219 5 C 0.387 3.613 6 O -0.450 6.450 7 N -0.325 5.325 8 C -0.006 4.006 9 C -0.159 4.159 10 C 0.026 3.974 11 O -0.296 6.296 12 C 0.008 3.992 13 C -0.009 4.009 14 N -0.364 5.364 15 C -0.363 4.363 16 H 0.107 0.893 17 C -0.260 4.260 18 N -0.600 5.600 19 Si 0.814 3.186 20 H -0.197 1.197 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.015 3.985 24 C -0.181 4.181 25 C -0.051 4.051 26 C -0.044 4.044 27 O -0.079 6.079 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.027 0.973 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.172 0.828 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 7.344 -21.783 -6.858 23.989 hybrid contribution -0.533 0.371 0.289 0.711 sum 6.811 -21.412 -6.569 23.410 Atomic orbital electron populations 1.20648 0.77969 1.06902 1.06465 1.27369 0.97995 0.77784 0.96819 1.70213 1.01001 1.29589 1.20817 1.21707 0.91835 0.93861 1.14522 1.17058 0.86385 0.81912 0.75954 1.90774 1.25650 1.75416 1.53134 1.48047 1.10362 1.05225 1.68837 1.21726 0.88547 0.90426 0.99906 1.21919 0.96924 0.97792 0.99253 1.22343 0.94727 0.87824 0.92485 1.87906 1.74259 1.29770 1.37700 1.24178 0.91911 0.85715 0.97404 1.22702 0.86525 0.93301 0.98326 1.45606 1.02775 1.02339 1.85710 1.19315 0.88496 0.84877 1.43620 0.89278 1.25750 0.97497 1.00316 1.02396 1.70032 1.09074 1.23573 1.57309 0.85042 0.77065 0.78128 0.78406 1.19708 1.21801 1.20376 1.22463 0.95427 0.84091 0.96556 1.22272 0.99156 0.96825 0.99822 1.22956 0.85311 0.99308 0.97513 1.25725 0.85589 0.94951 0.98088 1.84455 1.16615 1.37787 1.69045 0.86759 0.87460 0.86862 0.89072 0.88630 0.88322 0.92223 0.90805 0.88134 0.91908 0.94109 0.94055 0.97342 0.93763 0.92732 0.91164 0.90896 0.82777 0.72719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 71.23 0.75 0.32 16 2 C 0.21 3.22 8.30 88.39 0.73 3.95 16 3 N -0.49 -10.26 7.73 -293.03 -2.26 -12.52 16 4 C -0.10 -2.25 6.72 40.41 0.27 -1.98 16 5 C 0.60 15.57 7.69 86.66 0.67 16.23 16 6 O -0.57 -16.86 16.33 -4.07 -0.07 -16.93 16 7 N -0.59 -14.42 2.97 -822.79 -2.45 -16.87 16 8 C 0.12 2.46 6.41 86.36 0.55 3.01 16 9 C -0.12 -2.80 5.73 30.67 0.18 -2.62 16 10 C 0.08 2.30 2.56 30.62 0.08 2.38 16 11 O -0.38 -13.32 10.05 -148.98 -1.50 -14.82 16 12 C 0.07 2.63 4.61 30.93 0.14 2.77 16 13 C 0.12 5.01 8.52 83.18 0.71 5.72 16 14 N -0.64 -34.22 3.78 -739.09 -2.80 -37.01 16 15 C -0.24 -13.52 10.75 84.03 0.90 -12.62 16 16 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 17 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 18 N -0.95 -58.09 11.51 21.65 0.25 -57.84 16 19 Si 0.99 45.70 29.55 68.60 2.03 47.72 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 C 0.14 7.10 7.25 83.18 0.60 7.70 16 24 C -0.14 -3.94 5.69 30.67 0.17 -3.77 16 25 C 0.07 1.68 6.33 86.36 0.55 2.23 16 26 C 0.03 0.49 11.95 67.32 0.80 1.30 16 27 O -0.19 -2.90 10.73 0.38 0.00 -2.90 16 28 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.10 2.09 7.04 -2.39 -0.02 2.07 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.07 1.84 7.43 -2.39 -0.02 1.82 16 36 H 0.10 3.65 7.47 -2.39 -0.02 3.64 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 40 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.04 2.43 7.12 -2.39 -0.02 2.41 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 44 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.16 3.72 3.65 -53.68 -0.20 3.53 16 46 H 0.26 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -76.16 377.12 1.60 -74.56 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.81 Total: 15.34 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 7.58 Total: 21.27 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -7.26 Total: -124.25 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.56 Total: -34.65 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -76.16 1.60 -74.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093529938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.468 kcal (2) G-P(sol) polarization free energy of solvation -76.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds