Wall clock time and date at job start Tue Mar 31 2020 20:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47069 * 2 1 4 4 O 1.33654 * 125.80420 * 269.99793 * 3 2 1 5 5 C 1.34214 * 110.91322 * 179.97438 * 4 3 2 6 6 C 1.34177 * 109.12133 * 359.70374 * 5 4 3 7 7 C 1.36417 * 125.80114 * 89.99635 * 3 2 1 8 8 C 1.47373 * 127.19366 * 359.97438 * 7 3 2 9 9 O 1.21612 * 120.00085 * 341.99654 * 8 7 3 10 10 N 1.34780 * 119.99868 * 161.99909 * 8 7 3 11 11 C 1.47082 * 120.88262 * 354.84333 * 10 8 7 12 12 C 1.53238 * 108.52276 * 231.16618 * 11 10 8 13 13 N 1.46898 * 109.33999 * 306.17379 * 12 11 10 14 14 C 1.46900 * 110.99576 * 187.25507 * 13 12 11 15 15 C 1.50696 * 109.47377 * 299.69424 * 14 13 12 16 16 O 1.21296 * 119.99753 * 0.47268 * 15 14 13 17 17 N 1.34778 * 120.00319 * 180.46606 * 15 14 13 18 18 C 1.37100 * 119.99790 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00160 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99333 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00360 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99544 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47155 * 60.00168 * 22 20 18 24 24 H 1.48500 * 109.46992 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47178 * 300.00280 * 22 20 18 26 26 C 1.46898 * 111.27120 * 63.10445 * 13 12 11 27 27 C 1.47083 * 120.88129 * 174.82931 * 10 8 7 28 28 H 1.08997 * 109.47599 * 300.00426 * 1 2 3 29 29 H 1.09008 * 109.46857 * 60.00488 * 1 2 3 30 30 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47599 * 239.99574 * 2 1 3 32 32 H 1.09002 * 109.47248 * 119.99301 * 2 1 3 33 33 H 1.07997 * 125.43524 * 179.97438 * 5 4 3 34 34 H 1.08007 * 127.02299 * 180.26594 * 6 5 4 35 35 H 1.08995 * 109.62558 * 350.88290 * 11 10 8 36 36 H 1.09004 * 109.62523 * 111.45592 * 11 10 8 37 37 H 1.08996 * 109.49123 * 66.12947 * 12 11 10 38 38 H 1.09000 * 109.49037 * 186.21273 * 12 11 10 39 39 H 1.08999 * 109.47774 * 59.70285 * 14 13 12 40 40 H 1.09006 * 109.46723 * 179.69985 * 14 13 12 41 41 H 0.97001 * 119.99660 * 0.02562 * 17 15 14 42 42 H 0.97006 * 120.00099 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.49135 * 176.93295 * 26 13 12 44 44 H 1.09000 * 109.49073 * 56.85457 * 26 13 12 45 45 H 1.08997 * 109.62870 * 248.54616 * 27 10 8 46 46 H 1.09004 * 109.62814 * 9.12059 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2929 2.1580 -1.0840 5 6 2.7247 3.3811 -0.7391 6 6 2.7512 3.4767 0.5990 7 6 2.2982 2.1732 1.1064 8 6 2.1540 1.7671 2.5157 9 8 1.4681 0.8051 2.8042 10 7 2.7822 2.4618 3.4849 11 6 3.7049 3.5574 3.1513 12 6 5.0240 3.3269 3.8964 13 7 4.7501 3.1602 5.3300 14 6 5.9989 3.1086 6.1019 15 6 6.8297 1.9408 5.6359 16 8 6.4254 1.2273 4.7422 17 7 8.0219 1.6894 6.2120 18 6 8.7778 0.6273 5.7876 19 1 8.4178 -0.0081 4.9920 20 6 10.0067 0.3678 6.3820 21 7 10.4444 1.1405 7.3505 22 14 11.0364 -1.0798 5.8043 23 1 11.3622 -0.9125 4.3651 24 1 12.2938 -1.1386 6.5923 25 1 10.2723 -2.3386 5.9957 26 6 3.9269 1.9696 5.5803 27 6 2.5629 2.1445 4.9043 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.0021 4.1647 -1.4285 34 1 3.0479 4.3348 1.1840 35 1 3.8882 3.5674 2.0769 36 1 3.2711 4.5084 3.4604 37 1 5.5069 2.4288 3.5116 38 1 5.6798 4.1849 3.7488 39 1 6.5564 4.0334 5.9534 40 1 5.7671 2.9901 7.1604 41 1 8.3450 2.2598 6.9269 42 1 11.3025 0.9596 7.7652 43 1 3.7872 1.8432 6.6540 44 1 4.4252 1.0904 5.1720 45 1 2.0192 2.9596 5.3819 46 1 1.9911 1.2203 4.9888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112815364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:20 Heat of formation + Delta-G solvation = -28.751818 kcal Electronic energy + Delta-G solvation = -29601.347096 eV Core-core repulsion = 25493.646589 eV Total energy + Delta-G solvation = -4107.700506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.75969 -39.99711 -38.76419 -36.95468 -34.62971 -34.13987 -33.75412 -32.90600 -31.36499 -30.78721 -29.20973 -28.53054 -25.84405 -24.47220 -23.91562 -23.47075 -22.73309 -21.42048 -20.42316 -19.33519 -18.72376 -17.96509 -17.37090 -16.40025 -16.38275 -16.10407 -15.87865 -15.07441 -14.91548 -14.75961 -14.64653 -14.56514 -14.38174 -13.98631 -13.86182 -13.58123 -13.31715 -13.26799 -12.96652 -12.71808 -12.42006 -11.86863 -11.80919 -11.69509 -11.52610 -11.50843 -11.19490 -11.11905 -10.89050 -10.78223 -10.66394 -10.49511 -10.29120 -9.95397 -9.66150 -9.51269 -9.29172 -8.79548 -8.48063 -8.04353 -7.46437 -6.49449 -3.90939 1.31627 1.89737 2.64945 3.07213 3.13815 3.20910 3.25257 3.36419 3.77939 4.11381 4.27496 4.31752 4.57472 4.71497 4.92064 4.94192 5.11498 5.12732 5.15477 5.18532 5.25731 5.33178 5.41061 5.45899 5.51189 5.65066 5.69374 5.73331 5.82263 5.86034 5.93310 5.95332 5.98492 6.05072 6.08239 6.15433 6.18025 6.50158 6.63386 6.67027 6.89317 7.21225 7.34629 7.47172 7.55642 7.96604 8.28079 8.51460 9.08897 9.44607 9.95289 10.66943 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.002837 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.875639 B = 9865.780062 C =10512.017711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C 0.077 3.923 4 O -0.176 6.176 5 C -0.039 4.039 6 C -0.199 4.199 7 C -0.235 4.235 8 C 0.591 3.409 9 O -0.546 6.546 10 N -0.597 5.597 11 C 0.091 3.909 12 C 0.020 3.980 13 N -0.513 5.513 14 C 0.041 3.959 15 C 0.404 3.596 16 O -0.593 6.593 17 N -0.555 5.555 18 C -0.304 4.304 19 H 0.102 0.898 20 C 0.025 3.975 21 N -0.898 5.898 22 Si 0.930 3.070 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.026 3.974 27 C 0.122 3.878 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.208 0.792 34 H 0.170 0.830 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.393 0.607 42 H 0.273 0.727 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.481 7.215 -11.086 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C 0.024 3.976 4 O -0.072 6.072 5 C -0.105 4.105 6 C -0.218 4.218 7 C -0.239 4.239 8 C 0.381 3.619 9 O -0.426 6.426 10 N -0.330 5.330 11 C -0.031 4.031 12 C -0.109 4.109 13 N -0.236 5.236 14 C -0.090 4.090 15 C 0.190 3.810 16 O -0.480 6.480 17 N -0.190 5.190 18 C -0.433 4.433 19 H 0.119 0.881 20 C -0.177 4.177 21 N -0.539 5.539 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.103 4.103 27 C 0.000 4.000 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.224 0.776 34 H 0.187 0.813 35 H 0.125 0.875 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.226 0.774 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.223 6.555 -11.517 20.947 hybrid contribution 1.656 -0.578 0.266 1.774 sum -14.567 5.976 -11.251 19.352 Atomic orbital electron populations 1.21685 0.93234 1.02565 1.02471 1.20297 0.97076 0.86372 1.04729 1.22805 0.97302 0.94462 0.83056 1.83753 1.65251 1.23203 1.35011 1.23915 1.04061 0.86113 0.96426 1.23253 1.05705 0.98411 0.94406 1.21136 1.13036 0.95832 0.93937 1.17191 0.79201 0.81873 0.83682 1.90737 1.41426 1.27295 1.83130 1.47821 1.44256 1.34605 1.06286 1.22634 0.89666 0.89248 1.01579 1.22750 0.95957 1.03563 0.88580 1.62470 1.15414 1.37959 1.07771 1.22055 0.90352 0.97832 0.98795 1.21091 0.84034 0.89125 0.86789 1.90425 1.71935 1.52173 1.33508 1.42046 1.16271 1.27386 1.33298 1.19664 0.99205 1.06049 1.18415 0.88053 1.25283 0.97516 0.98894 0.96019 1.69598 1.21371 1.38614 1.24295 0.85927 0.78657 0.81010 0.78710 1.19869 1.20860 1.19841 1.22637 0.93063 0.94325 1.00229 1.21702 0.97224 1.01821 0.79251 0.91414 0.92832 0.91484 0.90072 0.87459 0.77576 0.81281 0.87512 0.91350 0.89626 0.90682 0.89217 0.89254 0.77365 0.91668 0.90522 0.90498 0.91377 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.05 -0.53 5.81 -27.88 -0.16 -0.70 16 3 C 0.08 0.97 6.62 -34.96 -0.23 0.74 16 4 O -0.18 -2.00 10.52 7.65 0.08 -1.92 16 5 C -0.04 -0.36 12.03 29.30 0.35 -0.01 16 6 C -0.20 -2.10 8.80 -37.45 -0.33 -2.43 16 7 C -0.24 -3.23 5.96 -103.28 -0.62 -3.84 16 8 C 0.59 9.44 7.63 -12.54 -0.10 9.34 16 9 O -0.55 -9.79 14.49 5.27 0.08 -9.71 16 10 N -0.60 -8.97 3.01 -173.75 -0.52 -9.50 16 11 C 0.09 1.18 5.42 -3.60 -0.02 1.16 16 12 C 0.02 0.31 5.13 -3.70 -0.02 0.30 16 13 N -0.51 -8.22 4.83 -235.77 -1.14 -9.35 16 14 C 0.04 0.70 5.83 -4.98 -0.03 0.68 16 15 C 0.40 9.06 7.20 -10.99 -0.08 8.98 16 16 O -0.59 -15.08 11.22 5.54 0.06 -15.02 16 17 N -0.55 -13.66 5.29 -10.96 -0.06 -13.71 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 19 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 22 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.03 0.43 5.20 -3.70 -0.02 0.41 16 27 C 0.12 1.80 6.61 -3.60 -0.02 1.78 16 28 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16 29 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.11 1.39 6.98 -51.93 -0.36 1.03 16 33 H 0.21 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.17 1.43 5.79 -52.48 -0.30 1.12 16 35 H 0.11 1.25 3.53 -51.93 -0.18 1.07 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.72 5.56 -51.93 -0.29 1.43 16 38 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 41 H 0.39 9.28 7.90 -40.82 -0.32 8.95 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.08 1.15 8.07 -51.93 -0.42 0.74 16 44 H 0.08 1.60 5.89 -51.93 -0.31 1.29 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.09 1.40 7.04 -51.93 -0.37 1.04 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -32.57 367.85 -7.67 -40.24 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -6.27 Total: 13.44 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -1.14 Total: 7.48 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -1.00 Total: -55.90 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: 0.22 Total: -26.65 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.57 -7.67 -40.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112815364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.491 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds