Wall clock time and date at job start Tue Mar 31 2020 20:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47069 * 2 1 4 4 O 1.33654 * 125.80420 * 269.99793 * 3 2 1 5 5 C 1.34214 * 110.91322 * 179.97438 * 4 3 2 6 6 C 1.34177 * 109.12133 * 359.70374 * 5 4 3 7 7 C 1.36417 * 125.80114 * 89.99635 * 3 2 1 8 8 C 1.47373 * 127.19366 * 359.97438 * 7 3 2 9 9 O 1.21612 * 120.00085 * 341.99654 * 8 7 3 10 10 N 1.34780 * 119.99868 * 161.99909 * 8 7 3 11 11 C 1.47082 * 120.88262 * 354.84333 * 10 8 7 12 12 C 1.53238 * 108.52276 * 231.16618 * 11 10 8 13 13 N 1.46898 * 109.33999 * 306.17379 * 12 11 10 14 14 C 1.46900 * 110.99576 * 187.25507 * 13 12 11 15 15 C 1.50696 * 109.47377 * 299.69424 * 14 13 12 16 16 O 1.21296 * 119.99753 * 0.47268 * 15 14 13 17 17 N 1.34778 * 120.00319 * 180.46606 * 15 14 13 18 18 C 1.37100 * 119.99790 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00160 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99333 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00360 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99544 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47155 * 60.00168 * 22 20 18 24 24 H 1.48500 * 109.46992 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47178 * 300.00280 * 22 20 18 26 26 C 1.46898 * 111.27120 * 63.10445 * 13 12 11 27 27 C 1.47083 * 120.88129 * 174.82931 * 10 8 7 28 28 H 1.08997 * 109.47599 * 300.00426 * 1 2 3 29 29 H 1.09008 * 109.46857 * 60.00488 * 1 2 3 30 30 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47599 * 239.99574 * 2 1 3 32 32 H 1.09002 * 109.47248 * 119.99301 * 2 1 3 33 33 H 1.07997 * 125.43524 * 179.97438 * 5 4 3 34 34 H 1.08007 * 127.02299 * 180.26594 * 6 5 4 35 35 H 1.08995 * 109.62558 * 350.88290 * 11 10 8 36 36 H 1.09004 * 109.62523 * 111.45592 * 11 10 8 37 37 H 1.08996 * 109.49123 * 66.12947 * 12 11 10 38 38 H 1.09000 * 109.49037 * 186.21273 * 12 11 10 39 39 H 1.08999 * 109.47774 * 59.70285 * 14 13 12 40 40 H 1.09006 * 109.46723 * 179.69985 * 14 13 12 41 41 H 0.97001 * 119.99660 * 0.02562 * 17 15 14 42 42 H 0.97006 * 120.00099 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.49135 * 176.93295 * 26 13 12 44 44 H 1.09000 * 109.49073 * 56.85457 * 26 13 12 45 45 H 1.08997 * 109.62870 * 248.54616 * 27 10 8 46 46 H 1.09004 * 109.62814 * 9.12059 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2929 2.1580 -1.0840 5 6 2.7247 3.3811 -0.7391 6 6 2.7512 3.4767 0.5990 7 6 2.2982 2.1732 1.1064 8 6 2.1540 1.7671 2.5157 9 8 1.4681 0.8051 2.8042 10 7 2.7822 2.4618 3.4849 11 6 3.7049 3.5574 3.1513 12 6 5.0240 3.3269 3.8964 13 7 4.7501 3.1602 5.3300 14 6 5.9989 3.1086 6.1019 15 6 6.8297 1.9408 5.6359 16 8 6.4254 1.2273 4.7422 17 7 8.0219 1.6894 6.2120 18 6 8.7778 0.6273 5.7876 19 1 8.4178 -0.0081 4.9920 20 6 10.0067 0.3678 6.3820 21 7 10.4444 1.1405 7.3505 22 14 11.0364 -1.0798 5.8043 23 1 11.3622 -0.9125 4.3651 24 1 12.2938 -1.1386 6.5923 25 1 10.2723 -2.3386 5.9957 26 6 3.9269 1.9696 5.5803 27 6 2.5629 2.1445 4.9043 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.0021 4.1647 -1.4285 34 1 3.0479 4.3348 1.1840 35 1 3.8882 3.5674 2.0769 36 1 3.2711 4.5084 3.4604 37 1 5.5069 2.4288 3.5116 38 1 5.6798 4.1849 3.7488 39 1 6.5564 4.0334 5.9534 40 1 5.7671 2.9901 7.1604 41 1 8.3450 2.2598 6.9269 42 1 11.3025 0.9596 7.7652 43 1 3.7872 1.8432 6.6540 44 1 4.4252 1.0904 5.1720 45 1 2.0192 2.9596 5.3819 46 1 1.9911 1.2203 4.9888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112815364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:20 Heat of formation + Delta-G solvation = -52.535092 kcal Electronic energy + Delta-G solvation = -29602.378416 eV Core-core repulsion = 25493.646589 eV Total energy + Delta-G solvation = -4108.731827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.62422 -41.31894 -40.30690 -38.41531 -36.20238 -35.38402 -35.04018 -33.89871 -33.33838 -31.96218 -30.35976 -29.64012 -27.45555 -25.86702 -25.18127 -24.53844 -23.77880 -22.42921 -21.69284 -21.01170 -19.99281 -19.62113 -18.51717 -17.78030 -17.47797 -17.28751 -17.01324 -16.60809 -16.31554 -16.14461 -16.06904 -15.77921 -15.44491 -15.41376 -15.29658 -15.10508 -14.47585 -14.30002 -14.26256 -13.66344 -13.60226 -13.31462 -13.17345 -13.10029 -12.92035 -12.76485 -12.51784 -12.49034 -12.19949 -12.11773 -12.06245 -12.01036 -11.94716 -11.41485 -11.08003 -11.01023 -10.66472 -10.02652 -9.84466 -9.51907 -9.03209 -8.49544 -5.99435 0.32668 1.10130 1.34294 1.37380 1.47726 1.76750 1.99176 2.00380 2.24776 2.26055 2.95585 3.16422 3.23763 3.51244 3.55294 3.86879 3.95789 4.01770 4.11159 4.17305 4.27505 4.33007 4.34612 4.40419 4.43866 4.57062 4.58724 4.62485 4.66644 4.68298 4.71465 4.83355 4.92285 5.00151 5.06050 5.09393 5.26628 5.26784 5.36046 5.38099 5.47759 5.79996 5.97852 5.99401 6.03899 6.39301 6.55845 7.08653 7.09157 7.52149 8.07975 8.65555 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.002837 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.875639 B = 9865.780062 C =10512.017711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.050 4.050 3 C 0.066 3.934 4 O -0.179 6.179 5 C -0.023 4.023 6 C -0.212 4.212 7 C -0.264 4.264 8 C 0.580 3.420 9 O -0.579 6.579 10 N -0.603 5.603 11 C 0.097 3.903 12 C 0.020 3.980 13 N -0.496 5.496 14 C 0.050 3.950 15 C 0.406 3.594 16 O -0.624 6.624 17 N -0.568 5.568 18 C -0.335 4.335 19 H 0.074 0.926 20 C -0.009 4.009 21 N -0.917 5.917 22 Si 0.988 3.012 23 H -0.272 1.272 24 H -0.268 1.268 25 H -0.275 1.275 26 C 0.031 3.969 27 C 0.127 3.873 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.254 0.746 34 H 0.192 0.808 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.037 0.963 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.397 0.603 42 H 0.279 0.721 43 H 0.091 0.909 44 H 0.027 0.973 45 H 0.095 0.905 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.704 9.446 -12.030 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.087 4.087 3 C 0.012 3.988 4 O -0.075 6.075 5 C -0.088 4.088 6 C -0.230 4.230 7 C -0.269 4.269 8 C 0.372 3.628 9 O -0.461 6.461 10 N -0.335 5.335 11 C -0.025 4.025 12 C -0.108 4.108 13 N -0.218 5.218 14 C -0.082 4.082 15 C 0.193 3.807 16 O -0.513 6.513 17 N -0.205 5.205 18 C -0.465 4.465 19 H 0.092 0.908 20 C -0.210 4.210 21 N -0.557 5.557 22 Si 0.812 3.188 23 H -0.198 1.198 24 H -0.192 1.192 25 H -0.200 1.200 26 C -0.098 4.098 27 C 0.004 3.996 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.270 0.730 34 H 0.209 0.791 35 H 0.139 0.861 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.114 0.886 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.046 0.954 45 H 0.113 0.887 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.446 8.821 -12.455 22.437 hybrid contribution 1.669 -1.243 0.506 2.142 sum -14.777 7.577 -11.949 20.458 Atomic orbital electron populations 1.21624 0.92253 1.03368 1.01923 1.20303 0.97908 0.86083 1.04396 1.22985 0.97400 0.95034 0.83352 1.83774 1.65201 1.24076 1.34441 1.24834 1.01439 0.85670 0.96835 1.23481 1.06483 0.97770 0.95261 1.21229 1.14765 0.98007 0.92877 1.17646 0.78865 0.81471 0.84865 1.90705 1.42938 1.28648 1.83814 1.47980 1.44328 1.34972 1.06192 1.22785 0.87882 0.89649 1.02180 1.22751 0.97700 1.02100 0.88289 1.62580 1.14439 1.36827 1.07979 1.22186 0.89878 0.96153 0.99961 1.22223 0.83405 0.89706 0.85386 1.90451 1.72452 1.53646 1.34721 1.42110 1.17055 1.27305 1.34045 1.19563 1.00612 1.07395 1.18912 0.90820 1.25982 0.97947 1.01093 0.95933 1.69649 1.21826 1.39564 1.24678 0.85063 0.77514 0.77846 0.78372 1.19772 1.19230 1.20037 1.22557 0.93639 0.92568 1.01017 1.21654 0.96061 1.02330 0.79506 0.93734 0.91401 0.90058 0.88033 0.90063 0.72999 0.79128 0.86105 0.88252 0.94452 0.88599 0.86445 0.87017 0.76910 0.91189 0.89030 0.95430 0.88660 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.89 71.98 0.71 -1.96 16 2 C -0.05 -1.14 5.81 29.85 0.17 -0.97 16 3 C 0.07 1.65 6.62 25.26 0.17 1.82 16 4 O -0.18 -3.74 10.52 4.46 0.05 -3.69 16 5 C -0.02 -0.34 12.03 66.89 0.80 0.46 16 6 C -0.21 -3.98 8.80 23.65 0.21 -3.78 16 7 C -0.26 -7.21 5.96 -18.99 -0.11 -7.32 16 8 C 0.58 19.03 7.63 86.65 0.66 19.69 16 9 O -0.58 -21.95 14.49 -4.07 -0.06 -22.01 16 10 N -0.60 -17.97 3.01 -821.86 -2.47 -20.45 16 11 C 0.10 2.32 5.42 86.35 0.47 2.79 16 12 C 0.02 0.61 5.13 86.38 0.44 1.06 16 13 N -0.50 -15.14 4.83 -899.84 -4.35 -19.48 16 14 C 0.05 1.62 5.83 85.56 0.50 2.12 16 15 C 0.41 18.48 7.20 87.66 0.63 19.11 16 16 O -0.62 -33.16 11.22 -3.08 -0.03 -33.19 16 17 N -0.57 -28.54 5.29 -306.98 -1.62 -30.16 16 18 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 19 H 0.07 4.49 7.16 -2.91 -0.02 4.46 16 20 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 21 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 22 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 26 C 0.03 1.03 5.20 86.38 0.45 1.48 16 27 C 0.13 3.71 6.61 86.35 0.57 4.28 16 28 H 0.04 1.08 7.91 -2.39 -0.02 1.07 16 29 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 2.28 6.98 -2.39 -0.02 2.27 16 33 H 0.25 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.19 2.58 5.79 -2.91 -0.02 2.56 16 35 H 0.12 2.59 3.53 -2.39 -0.01 2.58 16 36 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.04 1.54 5.56 -2.39 -0.01 1.53 16 38 H 0.10 2.50 8.11 -2.39 -0.02 2.48 16 39 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.11 3.19 8.08 -2.38 -0.02 3.17 16 41 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 42 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 43 H 0.09 2.70 8.07 -2.39 -0.02 2.68 16 44 H 0.03 1.20 5.89 -2.39 -0.01 1.19 16 45 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.08 2.50 7.04 -2.38 -0.02 2.49 16 Total: -1.00 -75.10 367.85 1.07 -74.03 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: 0.29 Total: 37.99 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 6.96 Total: 20.65 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -8.16 Total: -118.84 kcal Atomic # 8 Polarization: -58.85 SS G_CDS: -0.05 Total: -58.89 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -75.10 1.07 -74.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112815364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.496 kcal (2) G-P(sol) polarization free energy of solvation -75.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds