Wall clock time and date at job start Tue Mar 31 2020 20:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50693 * 109.46960 * 2 1 4 4 N 1.31926 * 119.64047 * 269.97799 * 3 2 1 5 5 C 1.32223 * 121.72979 * 180.02562 * 4 3 2 6 6 O 1.35735 * 119.60190 * 179.97438 * 5 4 3 7 7 C 1.42896 * 117.00225 * 0.02562 * 6 5 4 8 8 C 1.38925 * 120.79357 * 359.97438 * 5 4 3 9 9 C 1.38291 * 119.19416 * 359.78917 * 8 5 4 10 10 C 1.38731 * 119.63770 * 90.00346 * 3 2 1 11 11 N 1.39910 * 120.42929 * 359.97438 * 10 3 2 12 12 C 1.34772 * 119.99688 * 154.17191 * 11 10 3 13 13 O 1.21390 * 120.00619 * 3.90268 * 12 11 10 14 14 C 1.49343 * 119.99960 * 183.90484 * 12 11 10 15 15 O 1.21363 * 119.99694 * 5.52962 * 14 12 11 16 16 N 1.34770 * 120.00279 * 185.53011 * 14 12 11 17 17 C 1.46509 * 119.99926 * 5.62768 * 16 14 12 18 18 C 1.46496 * 120.00503 * 185.62370 * 16 14 12 19 19 H 1.09013 * 109.46883 * 0.02562 * 18 16 14 20 20 C 1.52995 * 109.47472 * 240.00512 * 18 16 14 21 21 C 1.50693 * 109.47408 * 119.99943 * 18 16 14 22 22 H 1.07997 * 120.00121 * 5.75279 * 21 18 16 23 23 C 1.37885 * 120.00242 * 185.75339 * 21 18 16 24 24 N 1.31513 * 119.99901 * 197.12974 * 23 21 18 25 25 Si 1.86804 * 119.99740 * 17.40700 * 23 21 18 26 26 H 1.48505 * 109.46648 * 179.72688 * 25 23 21 27 27 H 1.48496 * 109.46629 * 299.72258 * 25 23 21 28 28 H 1.48494 * 109.46996 * 59.72405 * 25 23 21 29 29 H 1.09000 * 109.46767 * 59.99831 * 1 2 3 30 30 H 1.09001 * 109.46764 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47062 * 299.99817 * 1 2 3 32 32 H 1.09002 * 109.46938 * 239.99942 * 2 1 3 33 33 H 1.09000 * 109.46767 * 120.00169 * 2 1 3 34 34 H 1.09000 * 109.46959 * 59.99777 * 7 6 5 35 35 H 1.09006 * 109.47235 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.47426 * 299.99569 * 7 6 5 37 37 H 1.08000 * 120.40501 * 180.02562 * 8 5 4 38 38 H 1.08003 * 120.79653 * 180.23547 * 9 8 5 39 39 H 0.96994 * 119.99790 * 334.18277 * 11 10 3 40 40 H 1.08998 * 109.46698 * 275.56231 * 17 16 14 41 41 H 1.08994 * 109.46965 * 35.56389 * 17 16 14 42 42 H 1.08998 * 109.47184 * 155.56778 * 17 16 14 43 43 H 1.08999 * 109.47162 * 174.28593 * 20 18 16 44 44 H 1.08997 * 109.46944 * 294.28378 * 20 18 16 45 45 H 1.08997 * 109.47253 * 54.28305 * 20 18 16 46 46 H 0.97001 * 120.00054 * 355.23054 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2502 2.0357 -1.1466 5 6 2.6911 3.2814 -1.1948 6 8 2.9010 3.8722 -2.3987 7 6 2.6244 3.0902 -3.5622 8 6 2.9421 3.9926 -0.0282 9 6 2.7212 3.3839 1.1937 10 6 2.2611 2.0675 1.2058 11 7 2.0279 1.4095 2.4183 12 6 2.6988 1.7812 3.5265 13 8 3.4523 2.7321 3.4897 14 6 2.5150 1.0231 4.8001 15 8 1.8411 0.0139 4.8136 16 7 3.0975 1.4597 5.9342 17 6 3.8076 2.7412 5.9467 18 6 3.0207 0.6531 7.1547 19 1 2.4580 -0.2585 6.9529 20 6 2.3179 1.4544 8.2523 21 6 4.4123 0.2938 7.6078 22 1 5.2698 0.7081 7.0986 23 6 4.5907 -0.5640 8.6725 24 7 5.7540 -0.6207 9.2835 25 14 3.1825 -1.6512 9.2421 26 1 3.6300 -2.4794 10.3908 27 1 2.0390 -0.8012 9.6605 28 1 2.7593 -2.5372 8.1281 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5753 2.7943 -3.5601 35 1 2.8334 3.6802 -4.4547 36 1 3.2531 2.1998 -3.5595 37 1 3.3018 5.0099 -0.0749 38 1 2.9040 3.9140 2.1168 39 1 1.3837 0.6857 2.4612 40 1 4.8279 2.5946 5.5924 41 1 3.2943 3.4473 5.2941 42 1 3.8289 3.1349 6.9629 43 1 2.1700 0.8206 9.1267 44 1 2.9319 2.3126 8.5253 45 1 1.3512 1.8008 7.8869 46 1 6.5060 -0.1113 8.9430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120953917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:44 Heat of formation + Delta-G solvation = -53.591492 kcal Electronic energy + Delta-G solvation = -29268.213901 eV Core-core repulsion = 25159.436266 eV Total energy + Delta-G solvation = -4108.777636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46708 -40.34189 -38.78851 -37.90867 -36.09817 -34.96970 -34.22190 -32.80652 -31.63099 -30.34898 -29.57655 -27.45265 -26.48613 -25.33332 -24.77208 -24.37732 -22.98208 -21.78494 -20.81090 -19.48813 -18.40060 -17.95724 -17.62194 -17.25019 -16.64049 -16.27502 -16.19287 -15.83629 -15.21149 -14.89117 -14.85177 -14.26922 -14.00674 -13.91914 -13.86351 -13.50261 -13.31294 -13.07909 -12.87637 -12.65227 -12.53796 -12.20903 -12.11753 -11.85800 -11.81776 -11.72919 -11.56779 -11.37878 -11.32982 -10.97215 -10.67448 -10.58428 -10.03219 -9.96851 -9.83867 -9.72730 -9.17150 -9.00176 -8.43234 -8.10641 -7.96764 -6.58370 -4.23427 0.76704 1.02843 1.72942 2.43182 2.91094 3.29977 3.36999 3.41478 3.54148 3.58549 3.78649 3.88209 4.37983 4.42120 4.51114 4.74539 4.90304 4.95099 5.02631 5.04419 5.06428 5.12709 5.14458 5.32403 5.46389 5.54008 5.64203 5.70316 5.77006 5.82304 5.91872 5.97017 6.08209 6.20661 6.31084 6.35565 6.42071 6.47350 6.80286 6.82067 7.00269 7.04736 7.17839 7.59014 7.62235 7.73619 8.03633 8.24146 8.35487 8.77495 9.45597 10.80237 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021553 B = 0.002686 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.794806 B =10420.440113 C =11085.619153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C 0.148 3.852 4 N -0.518 5.518 5 C 0.302 3.698 6 O -0.309 6.309 7 C 0.041 3.959 8 C -0.173 4.173 9 C -0.052 4.052 10 C 0.067 3.933 11 N -0.638 5.638 12 C 0.509 3.491 13 O -0.498 6.498 14 C 0.496 3.504 15 O -0.537 6.537 16 N -0.545 5.545 17 C 0.087 3.913 18 C 0.232 3.768 19 H 0.058 0.942 20 C -0.164 4.164 21 C -0.615 4.615 22 H 0.063 0.937 23 C 0.038 3.962 24 N -0.897 5.897 25 Si 1.040 2.960 26 H -0.282 1.282 27 H -0.271 1.271 28 H -0.278 1.278 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.423 0.577 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.029 0.971 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.943 7.213 -20.344 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C 0.008 3.992 4 N -0.241 5.241 5 C 0.122 3.878 6 O -0.216 6.216 7 C -0.054 4.054 8 C -0.194 4.194 9 C -0.079 4.079 10 C -0.030 4.030 11 N -0.286 5.286 12 C 0.292 3.708 13 O -0.373 6.373 14 C 0.276 3.724 15 O -0.416 6.416 16 N -0.275 5.275 17 C -0.056 4.056 18 C 0.131 3.869 19 H 0.076 0.924 20 C -0.222 4.222 21 C -0.653 4.653 22 H 0.081 0.919 23 C -0.169 4.169 24 N -0.530 5.530 25 Si 0.868 3.132 26 H -0.208 1.208 27 H -0.198 1.198 28 H -0.204 1.204 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.163 0.837 38 H 0.188 0.812 39 H 0.262 0.738 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.048 0.952 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.193 6.066 -19.937 23.198 hybrid contribution 0.553 1.104 -0.666 1.403 sum -9.640 7.170 -20.602 23.849 Atomic orbital electron populations 1.21735 0.93696 1.02608 1.02355 1.20540 0.96786 0.90207 1.04311 1.20629 0.96774 0.96060 0.85717 1.67047 1.18071 1.09627 1.29402 1.19779 0.93317 0.88481 0.86180 1.86246 1.82310 1.40833 1.12207 1.22825 1.01586 0.96219 0.84799 1.21027 1.06691 1.02268 0.89379 1.21934 0.94438 0.92163 0.99389 1.18445 1.05686 0.93007 0.85869 1.43139 1.42038 1.37174 1.06222 1.20864 0.79969 0.84461 0.85461 1.90641 1.35635 1.26775 1.84209 1.19567 0.82533 0.85850 0.84418 1.90717 1.39981 1.25698 1.85194 1.47989 1.48643 1.21099 1.09760 1.21921 0.97212 0.84038 1.02440 1.19430 0.98524 0.90115 0.78847 0.92443 1.22550 0.97953 1.01438 1.00283 1.22140 0.90803 1.32597 1.19736 0.91878 1.25699 1.01998 0.96288 0.92876 1.70867 1.02703 1.42927 1.36461 0.84134 0.75104 0.76998 0.77014 1.20807 1.19776 1.20385 0.92139 0.91365 0.92570 0.89280 0.89793 0.92412 0.88789 0.92368 0.83696 0.81240 0.73779 0.92429 0.90753 0.90992 0.91275 0.92808 0.95195 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.90 37.16 0.37 -0.80 16 2 C -0.08 -0.76 5.66 -27.88 -0.16 -0.92 16 3 C 0.15 1.75 6.05 -82.37 -0.50 1.25 16 4 N -0.52 -6.32 9.11 -9.39 -0.09 -6.41 16 5 C 0.30 3.67 7.49 -17.13 -0.13 3.54 16 6 O -0.31 -3.41 10.48 -18.91 -0.20 -3.61 16 7 C 0.04 0.33 10.38 101.05 1.05 1.37 16 8 C -0.17 -1.99 10.03 -39.31 -0.39 -2.39 16 9 C -0.05 -0.66 8.88 -39.11 -0.35 -1.01 16 10 C 0.07 0.86 6.44 -83.54 -0.54 0.32 16 11 N -0.64 -8.49 4.94 -10.17 -0.05 -8.54 16 12 C 0.51 8.20 7.59 -11.64 -0.09 8.12 16 13 O -0.50 -8.23 10.37 5.46 0.06 -8.17 16 14 C 0.50 9.60 7.72 -11.64 -0.09 9.51 16 15 O -0.54 -11.26 15.84 5.49 0.09 -11.18 16 16 N -0.55 -11.26 2.75 -175.81 -0.48 -11.74 16 17 C 0.09 1.55 8.37 59.85 0.50 2.06 16 18 C 0.23 5.42 2.21 -69.09 -0.15 5.26 16 19 H 0.06 1.43 5.56 -51.92 -0.29 1.14 16 20 C -0.16 -3.41 8.74 37.16 0.32 -3.09 16 21 C -0.61 -16.56 8.67 -34.44 -0.30 -16.86 16 22 H 0.06 1.84 7.79 -52.49 -0.41 1.43 16 23 C 0.04 1.06 5.35 -17.82 -0.10 0.96 16 24 N -0.90 -26.52 13.70 55.43 0.76 -25.76 16 25 Si 1.04 24.34 26.44 -169.99 -4.49 19.84 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 27 H -0.27 -5.75 5.47 56.52 0.31 -5.44 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 7.98 -51.93 -0.41 0.04 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.79 6.99 -51.93 -0.36 0.43 16 34 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 37 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.17 2.19 5.67 -52.48 -0.30 1.89 16 39 H 0.42 5.06 6.78 -40.82 -0.28 4.78 16 40 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 41 H 0.07 1.17 5.98 -51.93 -0.31 0.86 16 42 H 0.07 1.26 6.55 -51.93 -0.34 0.92 16 43 H 0.07 1.47 4.79 -51.93 -0.25 1.22 16 44 H 0.05 1.08 6.89 -51.93 -0.36 0.72 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.27 7.94 8.73 -40.82 -0.36 7.59 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -31.21 373.58 -5.68 -36.89 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.35 Total: 5.71 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -0.55 Total: 7.34 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.14 Total: -52.45 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.05 Total: -22.96 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -4.49 Total: 19.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.21 -5.68 -36.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120953917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.705 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds