Wall clock time and date at job start Tue Mar 31 2020 20:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50693 * 109.46960 * 2 1 4 4 N 1.31926 * 119.64047 * 269.97799 * 3 2 1 5 5 C 1.32223 * 121.72979 * 180.02562 * 4 3 2 6 6 O 1.35735 * 119.60190 * 179.97438 * 5 4 3 7 7 C 1.42896 * 117.00225 * 0.02562 * 6 5 4 8 8 C 1.38925 * 120.79357 * 359.97438 * 5 4 3 9 9 C 1.38291 * 119.19416 * 359.78917 * 8 5 4 10 10 C 1.38731 * 119.63770 * 90.00346 * 3 2 1 11 11 N 1.39910 * 120.42929 * 359.97438 * 10 3 2 12 12 C 1.34772 * 119.99688 * 154.17191 * 11 10 3 13 13 O 1.21390 * 120.00619 * 3.90268 * 12 11 10 14 14 C 1.49343 * 119.99960 * 183.90484 * 12 11 10 15 15 O 1.21363 * 119.99694 * 5.52962 * 14 12 11 16 16 N 1.34770 * 120.00279 * 185.53011 * 14 12 11 17 17 C 1.46509 * 119.99926 * 5.62768 * 16 14 12 18 18 C 1.46496 * 120.00503 * 185.62370 * 16 14 12 19 19 H 1.09013 * 109.46883 * 0.02562 * 18 16 14 20 20 C 1.52995 * 109.47472 * 240.00512 * 18 16 14 21 21 C 1.50693 * 109.47408 * 119.99943 * 18 16 14 22 22 H 1.07997 * 120.00121 * 5.75279 * 21 18 16 23 23 C 1.37885 * 120.00242 * 185.75339 * 21 18 16 24 24 N 1.31513 * 119.99901 * 197.12974 * 23 21 18 25 25 Si 1.86804 * 119.99740 * 17.40700 * 23 21 18 26 26 H 1.48505 * 109.46648 * 179.72688 * 25 23 21 27 27 H 1.48496 * 109.46629 * 299.72258 * 25 23 21 28 28 H 1.48494 * 109.46996 * 59.72405 * 25 23 21 29 29 H 1.09000 * 109.46767 * 59.99831 * 1 2 3 30 30 H 1.09001 * 109.46764 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47062 * 299.99817 * 1 2 3 32 32 H 1.09002 * 109.46938 * 239.99942 * 2 1 3 33 33 H 1.09000 * 109.46767 * 120.00169 * 2 1 3 34 34 H 1.09000 * 109.46959 * 59.99777 * 7 6 5 35 35 H 1.09006 * 109.47235 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.47426 * 299.99569 * 7 6 5 37 37 H 1.08000 * 120.40501 * 180.02562 * 8 5 4 38 38 H 1.08003 * 120.79653 * 180.23547 * 9 8 5 39 39 H 0.96994 * 119.99790 * 334.18277 * 11 10 3 40 40 H 1.08998 * 109.46698 * 275.56231 * 17 16 14 41 41 H 1.08994 * 109.46965 * 35.56389 * 17 16 14 42 42 H 1.08998 * 109.47184 * 155.56778 * 17 16 14 43 43 H 1.08999 * 109.47162 * 174.28593 * 20 18 16 44 44 H 1.08997 * 109.46944 * 294.28378 * 20 18 16 45 45 H 1.08997 * 109.47253 * 54.28305 * 20 18 16 46 46 H 0.97001 * 120.00054 * 355.23054 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2502 2.0357 -1.1466 5 6 2.6911 3.2814 -1.1948 6 8 2.9010 3.8722 -2.3987 7 6 2.6244 3.0902 -3.5622 8 6 2.9421 3.9926 -0.0282 9 6 2.7212 3.3839 1.1937 10 6 2.2611 2.0675 1.2058 11 7 2.0279 1.4095 2.4183 12 6 2.6988 1.7812 3.5265 13 8 3.4523 2.7321 3.4897 14 6 2.5150 1.0231 4.8001 15 8 1.8411 0.0139 4.8136 16 7 3.0975 1.4597 5.9342 17 6 3.8076 2.7412 5.9467 18 6 3.0207 0.6531 7.1547 19 1 2.4580 -0.2585 6.9529 20 6 2.3179 1.4544 8.2523 21 6 4.4123 0.2938 7.6078 22 1 5.2698 0.7081 7.0986 23 6 4.5907 -0.5640 8.6725 24 7 5.7540 -0.6207 9.2835 25 14 3.1825 -1.6512 9.2421 26 1 3.6300 -2.4794 10.3908 27 1 2.0390 -0.8012 9.6605 28 1 2.7593 -2.5372 8.1281 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5753 2.7943 -3.5601 35 1 2.8334 3.6802 -4.4547 36 1 3.2531 2.1998 -3.5595 37 1 3.3018 5.0099 -0.0749 38 1 2.9040 3.9140 2.1168 39 1 1.3837 0.6857 2.4612 40 1 4.8279 2.5946 5.5924 41 1 3.2943 3.4473 5.2941 42 1 3.8289 3.1349 6.9629 43 1 2.1700 0.8206 9.1267 44 1 2.9319 2.3126 8.5253 45 1 1.3512 1.8008 7.8869 46 1 6.5060 -0.1113 8.9430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120953917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:44 Heat of formation + Delta-G solvation = -76.049072 kcal Electronic energy + Delta-G solvation = -29269.187735 eV Core-core repulsion = 25159.436266 eV Total energy + Delta-G solvation = -4109.751469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.57326 -41.52384 -40.04154 -38.98970 -37.66999 -36.16873 -35.11169 -34.74489 -32.55181 -32.13916 -30.48228 -28.26820 -27.92824 -26.92467 -26.30127 -25.33354 -24.14369 -22.64566 -22.25112 -20.93216 -19.61877 -19.47270 -19.11088 -18.46123 -17.77904 -17.65422 -17.28636 -17.01462 -16.61713 -15.90757 -15.74031 -15.59921 -15.42400 -15.03457 -14.87780 -14.70662 -14.62486 -14.45982 -14.29570 -13.98380 -13.82613 -13.52091 -13.27795 -13.26809 -13.20899 -12.82557 -12.54558 -12.48526 -12.44877 -12.34374 -12.02835 -11.83442 -11.62927 -11.60090 -11.16054 -10.96571 -10.73640 -10.50249 -10.33086 -9.73933 -9.04507 -8.76160 -6.43931 -0.27703 0.06904 0.45664 1.13269 1.44734 1.54759 1.71768 1.99321 2.09270 2.42070 2.44359 2.60043 3.01479 3.03543 3.15029 3.53429 3.82324 3.99942 4.23063 4.27994 4.29346 4.33910 4.43989 4.45387 4.47063 4.53836 4.56582 4.66986 4.71639 4.72984 4.77827 4.85461 4.91505 4.99924 5.03298 5.06086 5.07684 5.27040 5.29950 5.41565 5.48957 5.70352 5.82982 5.98916 6.15792 6.30287 6.47187 6.55922 6.69607 6.85042 7.33451 8.59042 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021553 B = 0.002686 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.794806 B =10420.440113 C =11085.619153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C 0.151 3.849 4 N -0.524 5.524 5 C 0.296 3.704 6 O -0.316 6.316 7 C 0.036 3.964 8 C -0.175 4.175 9 C -0.056 4.056 10 C 0.048 3.952 11 N -0.621 5.621 12 C 0.516 3.484 13 O -0.505 6.505 14 C 0.493 3.507 15 O -0.554 6.554 16 N -0.558 5.558 17 C 0.093 3.907 18 C 0.231 3.769 19 H 0.047 0.953 20 C -0.156 4.156 21 C -0.612 4.612 22 H 0.027 0.973 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 1.073 2.927 26 H -0.285 1.285 27 H -0.232 1.232 28 H -0.273 1.273 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.123 0.877 36 H 0.054 0.946 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.430 0.570 40 H 0.042 0.958 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.044 7.658 -21.821 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C 0.011 3.989 4 N -0.248 5.248 5 C 0.117 3.883 6 O -0.223 6.223 7 C -0.058 4.058 8 C -0.196 4.196 9 C -0.083 4.083 10 C -0.049 4.049 11 N -0.268 5.268 12 C 0.299 3.701 13 O -0.380 6.380 14 C 0.275 3.725 15 O -0.434 6.434 16 N -0.288 5.288 17 C -0.049 4.049 18 C 0.129 3.871 19 H 0.064 0.936 20 C -0.214 4.214 21 C -0.650 4.650 22 H 0.046 0.954 23 C -0.209 4.209 24 N -0.563 5.563 25 Si 0.895 3.105 26 H -0.211 1.211 27 H -0.156 1.156 28 H -0.199 1.199 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.141 0.859 36 H 0.073 0.927 37 H 0.182 0.818 38 H 0.184 0.816 39 H 0.270 0.730 40 H 0.060 0.940 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.311 6.546 -21.471 25.601 hybrid contribution 1.259 1.005 -0.433 1.668 sum -11.053 7.551 -21.905 25.671 Atomic orbital electron populations 1.21714 0.92425 1.03612 1.02191 1.20626 0.97798 0.88776 1.04631 1.20966 0.95770 0.96893 0.85235 1.67123 1.18448 1.09847 1.29384 1.20035 0.92819 0.88538 0.86903 1.86246 1.82105 1.41434 1.12518 1.23064 1.01617 0.96568 0.84590 1.21216 1.06362 1.03127 0.88857 1.21957 0.94445 0.92221 0.99700 1.18546 1.07257 0.93413 0.85666 1.42916 1.41262 1.36958 1.05682 1.20157 0.80573 0.84307 0.85054 1.90645 1.36203 1.26983 1.84212 1.20065 0.81676 0.85698 0.85099 1.90694 1.40558 1.26489 1.85671 1.47984 1.49554 1.21698 1.09609 1.21963 0.96481 0.83432 1.03059 1.19217 0.96087 0.90922 0.80849 0.93554 1.22400 0.99007 1.00991 0.99037 1.22279 0.91860 1.31771 1.19065 0.95425 1.27005 1.03314 0.97212 0.93350 1.70990 1.03290 1.44180 1.37847 0.83737 0.73910 0.76114 0.76772 1.21088 1.15609 1.19872 0.92276 0.89803 0.92734 0.88572 0.89828 0.92298 0.85938 0.92682 0.81815 0.81646 0.72981 0.93968 0.88316 0.90834 0.91506 0.92581 0.92501 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.90 71.98 0.71 -1.27 16 2 C -0.08 -1.38 5.66 29.85 0.17 -1.21 16 3 C 0.15 3.35 6.05 42.66 0.26 3.61 16 4 N -0.52 -12.00 9.11 -296.46 -2.70 -14.70 16 5 C 0.30 6.76 7.49 84.80 0.63 7.39 16 6 O -0.32 -6.41 10.48 -90.59 -0.95 -7.36 16 7 C 0.04 0.50 10.38 113.37 1.18 1.68 16 8 C -0.17 -3.78 10.03 22.45 0.23 -3.55 16 9 C -0.06 -1.35 8.88 22.57 0.20 -1.15 16 10 C 0.05 1.16 6.44 38.26 0.25 1.41 16 11 N -0.62 -15.75 4.94 -304.45 -1.50 -17.26 16 12 C 0.52 16.14 7.59 87.24 0.66 16.80 16 13 O -0.50 -16.21 10.37 -3.37 -0.03 -16.24 16 14 C 0.49 18.68 7.72 87.24 0.67 19.35 16 15 O -0.55 -22.72 15.84 -3.29 -0.05 -22.77 16 16 N -0.56 -22.74 2.75 -828.51 -2.28 -25.02 16 17 C 0.09 3.28 8.37 127.77 1.07 4.35 16 18 C 0.23 10.64 2.21 44.24 0.10 10.74 16 19 H 0.05 2.26 5.56 -2.38 -0.01 2.24 16 20 C -0.16 -6.17 8.74 71.98 0.63 -5.54 16 21 C -0.61 -33.49 8.67 25.60 0.22 -33.27 16 22 H 0.03 1.67 7.79 -2.91 -0.02 1.65 16 23 C -0.01 -0.49 5.35 84.66 0.45 -0.04 16 24 N -0.93 -56.32 13.70 21.45 0.29 -56.02 16 25 Si 1.07 48.29 26.44 68.60 1.81 50.11 16 26 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 27 H -0.23 -8.95 5.47 99.48 0.54 -8.40 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.78 7.98 -2.39 -0.02 0.76 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.45 6.99 -2.39 -0.02 1.43 16 34 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 35 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 37 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 38 H 0.17 4.10 5.67 -2.91 -0.02 4.08 16 39 H 0.43 9.68 6.78 -92.71 -0.63 9.05 16 40 H 0.04 1.60 8.09 -2.39 -0.02 1.58 16 41 H 0.10 2.99 5.98 -2.39 -0.01 2.98 16 42 H 0.07 2.54 6.55 -2.39 -0.02 2.52 16 43 H 0.07 2.65 4.79 -2.39 -0.01 2.64 16 44 H 0.06 2.16 6.89 -2.39 -0.02 2.14 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.25 15.68 8.73 -92.71 -0.81 14.87 16 Total: -1.00 -67.67 373.58 2.21 -65.46 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.20 Total: 24.52 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 7.43 Total: 19.30 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -6.19 Total: -113.00 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -1.04 Total: -46.38 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 1.81 Total: 50.11 kcal Total: -67.67 2.21 -65.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120953917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.593 kcal (2) G-P(sol) polarization free energy of solvation -67.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds