Wall clock time and date at job start Tue Mar 31 2020 20:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46977 * 2 1 4 4 C 1.35134 * 125.60964 * 89.97719 * 3 2 1 5 5 C 1.40366 * 107.10920 * 179.78018 * 4 3 2 6 6 C 1.36547 * 106.71315 * 0.35404 * 5 4 3 7 7 C 1.46647 * 125.99087 * 179.90765 * 6 5 4 8 8 O 1.21697 * 120.00161 * 359.71354 * 7 6 5 9 9 N 1.34775 * 120.00167 * 179.71799 * 7 6 5 10 10 C 1.47031 * 125.64646 * 0.02562 * 9 7 6 11 11 C 1.54327 * 107.26879 * 181.04030 * 10 9 7 12 12 C 1.55156 * 102.94181 * 22.19441 * 11 10 9 13 13 H 1.08999 * 111.00338 * 82.57390 * 12 11 10 14 14 N 1.46907 * 110.99930 * 206.38243 * 12 11 10 15 15 C 1.46900 * 110.99678 * 204.99641 * 14 12 11 16 16 C 1.50706 * 109.46641 * 179.97438 * 15 14 12 17 17 O 1.21284 * 120.00354 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99687 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99893 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99952 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99735 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00089 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99843 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47293 * 59.99982 * 23 21 19 25 25 H 1.48503 * 109.47411 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47252 * 300.00116 * 23 21 19 27 27 C 1.47422 * 125.65218 * 179.97438 * 9 7 6 28 28 O 1.33928 * 125.61951 * 269.97846 * 3 2 1 29 29 H 1.08993 * 109.47347 * 59.99811 * 1 2 3 30 30 H 1.09005 * 109.46499 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46866 * 299.99180 * 1 2 3 32 32 H 1.08999 * 109.47302 * 240.00645 * 2 1 3 33 33 H 1.08998 * 109.47777 * 120.00353 * 2 1 3 34 34 H 1.07994 * 126.44701 * 0.02562 * 4 3 2 35 35 H 1.08001 * 126.64510 * 180.22410 * 5 4 3 36 36 H 1.08998 * 109.88059 * 61.62395 * 10 9 7 37 37 H 1.08994 * 109.87878 * 300.45675 * 10 9 7 38 38 H 1.09001 * 110.71763 * 140.55775 * 11 10 9 39 39 H 1.08997 * 110.71798 * 263.82943 * 11 10 9 40 40 H 1.00896 * 110.99941 * 81.05005 * 14 12 11 41 41 H 1.08990 * 109.47492 * 300.00578 * 15 14 12 42 42 H 1.09001 * 109.47063 * 60.00869 * 15 14 12 43 43 H 0.97003 * 119.99705 * 0.02562 * 18 16 15 44 44 H 0.97003 * 119.99887 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.36378 * 37.05323 * 27 9 7 46 46 H 1.09001 * 110.46274 * 274.77499 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2941 2.1628 1.0986 5 6 2.7428 3.4161 0.6532 6 6 2.7243 3.3775 -0.7116 7 6 3.1116 4.4699 -1.6099 8 8 3.4873 5.5321 -1.1497 9 7 3.0516 4.2978 -2.9453 10 6 2.6177 3.0726 -3.6326 11 6 2.7387 3.3308 -5.1493 12 6 3.7694 4.4881 -5.2236 13 1 4.7891 4.1075 -5.1656 14 7 3.5770 5.2871 -6.4413 15 6 4.8227 5.9613 -6.8308 16 6 4.5870 6.7687 -8.0813 17 8 3.4893 6.7816 -8.5969 18 7 5.5959 7.4773 -8.6260 19 6 5.3814 8.2122 -9.7633 20 1 4.4039 8.2237 -10.2224 21 6 6.4216 8.9423 -10.3251 22 7 7.6108 8.9287 -9.7661 23 14 6.1291 9.9442 -11.8743 24 1 5.0769 10.9597 -11.6158 25 1 7.3883 10.6262 -12.2679 26 1 5.6896 9.0440 -12.9704 27 6 3.4089 5.3070 -3.9587 28 8 2.2927 2.1561 -1.0887 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.1832 1.8492 2.1261 35 1 3.0425 4.2501 1.2705 36 1 1.5819 2.8505 -3.3758 37 1 3.2596 2.2397 -3.3460 38 1 3.1149 2.4457 -5.6623 39 1 1.7801 3.6407 -5.5654 40 1 2.8278 5.9523 -6.3227 41 1 5.1450 6.6223 -6.0263 42 1 5.5953 5.2161 -7.0202 43 1 6.4737 7.4672 -8.2133 44 1 8.3370 9.4381 -10.1585 45 1 4.2680 5.8901 -3.6268 46 1 2.5613 5.9622 -4.1595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183684917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:13 Heat of formation + Delta-G solvation = -53.409508 kcal Electronic energy + Delta-G solvation = -27895.947239 eV Core-core repulsion = 23787.177495 eV Total energy + Delta-G solvation = -4108.769744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.07671 -40.14790 -38.45177 -37.69369 -34.93822 -34.61948 -33.80111 -33.23138 -31.32264 -30.99176 -29.64551 -28.51142 -26.33254 -24.94066 -23.97496 -23.25433 -22.24859 -21.24558 -20.96158 -20.10603 -19.31096 -18.06886 -17.84392 -16.98030 -16.39813 -16.37450 -16.08176 -15.50352 -15.32993 -14.87981 -14.53246 -14.49046 -14.14566 -13.90115 -13.66282 -13.57839 -13.54901 -13.34553 -13.04658 -12.93679 -12.87031 -12.70546 -12.33575 -12.11298 -11.88385 -11.69678 -11.59329 -11.47871 -11.38877 -11.01941 -10.92208 -10.52638 -10.44174 -10.37794 -10.21619 -9.50655 -9.09295 -8.77502 -8.51017 -8.14956 -7.97022 -6.41863 -3.82945 0.72125 1.96042 2.19647 2.70796 2.90796 3.20337 3.26248 3.30544 3.89045 3.94531 4.06138 4.23248 4.29325 4.48366 4.50808 4.54208 4.65728 4.69131 4.88513 4.89611 5.00775 5.11162 5.18691 5.21536 5.26266 5.28332 5.30254 5.39094 5.48492 5.52600 5.56394 5.63459 5.65372 5.75849 5.84873 5.91327 5.95616 6.00296 6.01156 6.25266 6.55159 7.10596 7.12981 7.52729 7.54860 7.74996 8.05152 8.60208 9.17102 9.53236 10.04307 10.75646 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031136 B = 0.001790 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.057933 B =15635.082982 C =16191.067022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C 0.019 3.981 4 C -0.221 4.221 5 C -0.117 4.117 6 C -0.074 4.074 7 C 0.615 3.385 8 O -0.521 6.521 9 N -0.606 5.606 10 C 0.102 3.898 11 C -0.119 4.119 12 C 0.077 3.923 13 H 0.095 0.905 14 N -0.651 5.651 15 C 0.047 3.953 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.562 5.562 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.932 3.068 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.076 3.924 28 O -0.156 6.156 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.353 0.647 41 H 0.047 0.953 42 H 0.088 0.912 43 H 0.393 0.607 44 H 0.272 0.728 45 H 0.082 0.918 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 -19.168 21.874 30.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.085 4.085 3 C -0.033 4.033 4 C -0.240 4.240 5 C -0.138 4.138 6 C -0.126 4.126 7 C 0.403 3.597 8 O -0.399 6.399 9 N -0.339 5.339 10 C -0.021 4.021 11 C -0.158 4.158 12 C -0.035 4.035 13 H 0.113 0.887 14 N -0.282 5.282 15 C -0.085 4.085 16 C 0.225 3.775 17 O -0.468 6.468 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.048 4.048 28 O -0.052 6.052 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.174 0.826 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.855 -19.070 20.998 30.028 hybrid contribution 0.619 1.280 0.432 1.486 sum -9.236 -17.790 21.429 29.343 Atomic orbital electron populations 1.21798 0.93472 1.02694 1.02912 1.20208 0.96700 0.86945 1.04618 1.22885 1.01062 0.95121 0.84250 1.21576 1.08277 0.94312 0.99814 1.21947 1.00120 0.98883 0.92858 1.21924 1.10807 0.85523 0.94379 1.16186 0.78250 0.85150 0.80093 1.90905 1.48209 1.25462 1.75342 1.48235 1.65104 1.16192 1.04410 1.22191 1.00382 0.86729 0.92774 1.22670 1.00864 0.99323 0.92931 1.22829 0.99863 0.94037 0.86750 0.88718 1.60170 1.07382 1.29936 1.30741 1.21771 0.92591 0.97388 0.96770 1.19756 0.85954 0.84458 0.87312 1.90524 1.24491 1.67258 1.64551 1.41855 1.11210 1.41750 1.25036 1.19658 0.98285 1.23060 1.02029 0.87935 1.25269 0.94796 0.98219 0.99621 1.69607 1.01424 1.42308 1.40878 0.85907 0.77445 0.79601 0.81198 1.19916 1.20978 1.19877 1.23229 1.01330 0.91834 0.88427 1.84097 1.64539 1.21935 1.34640 0.92053 0.91289 0.92029 0.89586 0.88464 0.82711 0.82237 0.90957 0.90925 0.89281 0.89609 0.82574 0.93511 0.89346 0.77419 0.91794 0.89935 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.89 37.16 0.37 -0.22 16 2 C -0.05 -0.20 6.47 -27.88 -0.18 -0.38 16 3 C 0.02 0.15 6.57 -35.41 -0.23 -0.08 16 4 C -0.22 -1.73 10.77 -39.89 -0.43 -2.16 16 5 C -0.12 -1.19 10.62 -39.39 -0.42 -1.61 16 6 C -0.07 -0.86 6.95 -36.80 -0.26 -1.11 16 7 C 0.61 8.37 7.82 -12.87 -0.10 8.26 16 8 O -0.52 -8.67 17.12 5.19 0.09 -8.58 16 9 N -0.61 -7.25 3.33 -172.05 -0.57 -7.83 16 10 C 0.10 0.96 5.55 -3.06 -0.02 0.94 16 11 C -0.12 -1.15 6.65 -24.90 -0.17 -1.32 16 12 C 0.08 0.90 3.38 -65.55 -0.22 0.68 16 13 H 0.09 1.07 7.83 -51.93 -0.41 0.66 16 14 N -0.65 -9.88 6.04 -105.71 -0.64 -10.52 16 15 C 0.05 0.81 6.03 -4.97 -0.03 0.78 16 16 C 0.44 10.25 7.82 -10.98 -0.09 10.16 16 17 O -0.58 -15.66 15.78 5.55 0.09 -15.58 16 18 N -0.56 -14.19 5.29 -10.96 -0.06 -14.24 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 23 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.08 0.93 6.51 -2.52 -0.02 0.91 16 28 O -0.16 -1.53 8.28 4.99 0.04 -1.49 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 37 H 0.07 0.63 7.68 -51.93 -0.40 0.23 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.35 5.58 7.89 -39.29 -0.31 5.27 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 43 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 44 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 46 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -33.63 389.62 -8.32 -41.96 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.82 Total: 11.33 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -2.03 Total: 6.83 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.54 Total: -56.40 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: 0.22 Total: -25.65 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.63 -8.32 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183684917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.452 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds