Wall clock time and date at job start Tue Mar 31 2020 20:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46977 * 2 1 4 4 C 1.35134 * 125.60964 * 89.97719 * 3 2 1 5 5 C 1.40366 * 107.10920 * 179.78018 * 4 3 2 6 6 C 1.36547 * 106.71315 * 0.35404 * 5 4 3 7 7 C 1.46647 * 125.99087 * 179.90765 * 6 5 4 8 8 O 1.21697 * 120.00161 * 359.71354 * 7 6 5 9 9 N 1.34775 * 120.00167 * 179.71799 * 7 6 5 10 10 C 1.47031 * 125.64646 * 0.02562 * 9 7 6 11 11 C 1.54327 * 107.26879 * 181.04030 * 10 9 7 12 12 C 1.55156 * 102.94181 * 22.19441 * 11 10 9 13 13 H 1.08999 * 111.00338 * 82.57390 * 12 11 10 14 14 N 1.46907 * 110.99930 * 206.38243 * 12 11 10 15 15 C 1.46900 * 110.99678 * 204.99641 * 14 12 11 16 16 C 1.50706 * 109.46641 * 179.97438 * 15 14 12 17 17 O 1.21284 * 120.00354 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99687 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99893 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99952 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99735 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00089 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99843 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47293 * 59.99982 * 23 21 19 25 25 H 1.48503 * 109.47411 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47252 * 300.00116 * 23 21 19 27 27 C 1.47422 * 125.65218 * 179.97438 * 9 7 6 28 28 O 1.33928 * 125.61951 * 269.97846 * 3 2 1 29 29 H 1.08993 * 109.47347 * 59.99811 * 1 2 3 30 30 H 1.09005 * 109.46499 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46866 * 299.99180 * 1 2 3 32 32 H 1.08999 * 109.47302 * 240.00645 * 2 1 3 33 33 H 1.08998 * 109.47777 * 120.00353 * 2 1 3 34 34 H 1.07994 * 126.44701 * 0.02562 * 4 3 2 35 35 H 1.08001 * 126.64510 * 180.22410 * 5 4 3 36 36 H 1.08998 * 109.88059 * 61.62395 * 10 9 7 37 37 H 1.08994 * 109.87878 * 300.45675 * 10 9 7 38 38 H 1.09001 * 110.71763 * 140.55775 * 11 10 9 39 39 H 1.08997 * 110.71798 * 263.82943 * 11 10 9 40 40 H 1.00896 * 110.99941 * 81.05005 * 14 12 11 41 41 H 1.08990 * 109.47492 * 300.00578 * 15 14 12 42 42 H 1.09001 * 109.47063 * 60.00869 * 15 14 12 43 43 H 0.97003 * 119.99705 * 0.02562 * 18 16 15 44 44 H 0.97003 * 119.99887 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.36378 * 37.05323 * 27 9 7 46 46 H 1.09001 * 110.46274 * 274.77499 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2941 2.1628 1.0986 5 6 2.7428 3.4161 0.6532 6 6 2.7243 3.3775 -0.7116 7 6 3.1116 4.4699 -1.6099 8 8 3.4873 5.5321 -1.1497 9 7 3.0516 4.2978 -2.9453 10 6 2.6177 3.0726 -3.6326 11 6 2.7387 3.3308 -5.1493 12 6 3.7694 4.4881 -5.2236 13 1 4.7891 4.1075 -5.1656 14 7 3.5770 5.2871 -6.4413 15 6 4.8227 5.9613 -6.8308 16 6 4.5870 6.7687 -8.0813 17 8 3.4893 6.7816 -8.5969 18 7 5.5959 7.4773 -8.6260 19 6 5.3814 8.2122 -9.7633 20 1 4.4039 8.2237 -10.2224 21 6 6.4216 8.9423 -10.3251 22 7 7.6108 8.9287 -9.7661 23 14 6.1291 9.9442 -11.8743 24 1 5.0769 10.9597 -11.6158 25 1 7.3883 10.6262 -12.2679 26 1 5.6896 9.0440 -12.9704 27 6 3.4089 5.3070 -3.9587 28 8 2.2927 2.1561 -1.0887 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.1832 1.8492 2.1261 35 1 3.0425 4.2501 1.2705 36 1 1.5819 2.8505 -3.3758 37 1 3.2596 2.2397 -3.3460 38 1 3.1149 2.4457 -5.6623 39 1 1.7801 3.6407 -5.5654 40 1 2.8278 5.9523 -6.3227 41 1 5.1450 6.6223 -6.0263 42 1 5.5953 5.2161 -7.0202 43 1 6.4737 7.4672 -8.2133 44 1 8.3370 9.4381 -10.1585 45 1 4.2680 5.8901 -3.6268 46 1 2.5613 5.9622 -4.1595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183684917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:12 Heat of formation + Delta-G solvation = -77.418052 kcal Electronic energy + Delta-G solvation = -27896.988328 eV Core-core repulsion = 23787.177495 eV Total energy + Delta-G solvation = -4109.810833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.77536 -41.13663 -40.14636 -38.90880 -36.26198 -35.64567 -35.11970 -33.91105 -33.27954 -32.09234 -30.41961 -29.49355 -27.79484 -26.11915 -25.14242 -24.10401 -22.97282 -21.94083 -21.87381 -21.11447 -20.91887 -19.93269 -18.90912 -17.91845 -17.60835 -17.35976 -17.17714 -16.79043 -16.38350 -16.25829 -15.90282 -15.54324 -15.23267 -15.21183 -14.80778 -14.54020 -14.24590 -14.12718 -14.08026 -13.94226 -13.85541 -13.60175 -13.49842 -13.25957 -13.23647 -12.90070 -12.61351 -12.47036 -12.44255 -12.40210 -12.12215 -11.90685 -11.78392 -11.56462 -11.50198 -11.08239 -10.36051 -10.02730 -10.01339 -9.52257 -9.41161 -8.46631 -5.95592 -0.07857 1.29366 1.39915 1.40885 1.42116 1.52989 1.88040 1.98270 2.04728 2.29204 2.85416 3.20418 3.24686 3.42958 3.59964 3.66295 3.82988 3.89686 3.96280 4.18571 4.24195 4.24872 4.31897 4.35313 4.40677 4.49651 4.53002 4.55932 4.61321 4.70703 4.74035 4.79736 4.90497 4.97259 5.04906 5.09314 5.12361 5.16933 5.33883 5.40776 5.43487 5.84162 5.86033 6.05755 6.20480 6.27759 6.59299 6.76515 7.12033 7.55613 8.10463 8.70401 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031136 B = 0.001790 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.057933 B =15635.082982 C =16191.067022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.046 4.046 3 C 0.029 3.971 4 C -0.225 4.225 5 C -0.119 4.119 6 C -0.105 4.105 7 C 0.609 3.391 8 O -0.566 6.566 9 N -0.606 5.606 10 C 0.107 3.893 11 C -0.110 4.110 12 C 0.083 3.917 13 H 0.106 0.894 14 N -0.658 5.658 15 C 0.062 3.938 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.077 3.923 28 O -0.160 6.160 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.183 0.817 35 H 0.159 0.841 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.348 0.652 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.070 0.930 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 -21.460 22.705 32.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 C -0.024 4.024 4 C -0.244 4.244 5 C -0.140 4.140 6 C -0.157 4.157 7 C 0.400 3.600 8 O -0.448 6.448 9 N -0.338 5.338 10 C -0.015 4.015 11 C -0.149 4.149 12 C -0.028 4.028 13 H 0.124 0.876 14 N -0.290 5.290 15 C -0.071 4.071 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.048 4.048 28 O -0.057 6.057 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.200 0.800 35 H 0.177 0.823 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.168 0.832 41 H 0.083 0.917 42 H 0.128 0.872 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.051 -21.401 21.832 32.182 hybrid contribution 0.611 1.882 0.265 1.996 sum -9.440 -19.519 22.098 30.958 Atomic orbital electron populations 1.21799 0.93086 1.03657 1.02235 1.20444 0.96837 0.84745 1.06297 1.23689 0.98973 0.96086 0.83628 1.21900 1.07998 0.93180 1.01321 1.22202 0.99300 0.99916 0.92589 1.21573 1.13619 0.86135 0.94372 1.16488 0.77709 0.85248 0.80605 1.90862 1.50464 1.27287 1.76181 1.48312 1.64492 1.16893 1.04104 1.22293 1.01142 0.85937 0.92141 1.22649 1.00050 0.98959 0.93202 1.22856 1.01203 0.93915 0.84867 0.87646 1.60203 1.06331 1.29684 1.32750 1.21641 0.94050 0.97453 0.93932 1.20824 0.84775 0.83535 0.88346 1.90492 1.25958 1.68319 1.66112 1.41932 1.11887 1.42272 1.24893 1.19646 0.97932 1.25155 1.03747 0.90192 1.26053 0.94344 0.98642 1.02274 1.69670 1.01887 1.42611 1.41918 0.84978 0.77761 0.78056 0.77480 1.19766 1.19548 1.19609 1.23146 1.00701 0.92039 0.88880 1.84076 1.64667 1.21380 1.35536 0.93336 0.89524 0.92145 0.88659 0.86039 0.79979 0.82319 0.90107 0.89631 0.87512 0.89908 0.83194 0.91675 0.87195 0.76972 0.91305 0.91185 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 71.98 0.71 -0.04 16 2 C -0.05 -0.24 6.47 29.85 0.19 -0.05 16 3 C 0.03 0.38 6.57 24.97 0.16 0.54 16 4 C -0.23 -3.07 10.77 22.07 0.24 -2.83 16 5 C -0.12 -2.37 10.62 22.39 0.24 -2.13 16 6 C -0.11 -2.42 6.95 24.07 0.17 -2.25 16 7 C 0.61 16.98 7.82 86.44 0.68 17.66 16 8 O -0.57 -19.78 17.12 -4.34 -0.07 -19.85 16 9 N -0.61 -14.39 3.33 -816.47 -2.72 -17.10 16 10 C 0.11 1.83 5.55 86.73 0.48 2.31 16 11 C -0.11 -1.92 6.65 31.78 0.21 -1.71 16 12 C 0.08 1.83 3.38 46.31 0.16 1.99 16 13 H 0.11 2.15 7.83 -2.39 -0.02 2.13 16 14 N -0.66 -19.49 6.04 -488.35 -2.95 -22.43 16 15 C 0.06 2.04 6.03 85.56 0.52 2.56 16 16 C 0.44 20.62 7.82 87.66 0.69 21.31 16 17 O -0.62 -34.12 15.78 -3.04 -0.05 -34.17 16 18 N -0.57 -29.40 5.29 -306.98 -1.62 -31.02 16 19 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16 20 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 22 N -0.92 -49.94 13.05 21.66 0.28 -49.66 16 23 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C 0.08 1.88 6.51 86.86 0.57 2.44 16 28 O -0.16 -2.92 8.28 -5.05 -0.04 -2.96 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.09 0.16 8.14 -2.38 -0.02 0.14 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.08 1.28 7.79 -2.39 -0.02 1.27 16 37 H 0.09 1.29 7.68 -2.39 -0.02 1.27 16 38 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.35 11.01 7.89 -89.70 -0.71 10.30 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.11 3.23 8.09 -2.39 -0.02 3.21 16 43 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 44 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 45 H 0.07 1.88 8.04 -2.39 -0.02 1.86 16 46 H 0.07 1.78 7.75 -2.39 -0.02 1.76 16 Total: -1.00 -74.57 389.62 0.72 -73.86 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: -0.43 Total: 36.91 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: 6.28 Total: 21.26 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -7.00 Total: -120.21 kcal Atomic # 8 Polarization: -56.81 SS G_CDS: -0.16 Total: -56.97 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -74.57 0.72 -73.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183684917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.561 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds