Wall clock time and date at job start Tue Mar 31 2020 20:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47387 * 2 1 4 4 O 1.33653 * 125.80093 * 270.14706 * 3 2 1 5 5 C 1.34217 * 110.90974 * 180.26576 * 4 3 2 6 6 C 1.34185 * 109.12068 * 359.75828 * 5 4 3 7 7 C 1.36412 * 125.80284 * 89.99899 * 3 2 1 8 8 C 1.47378 * 127.19096 * 0.02562 * 7 3 2 9 9 O 1.21617 * 120.00320 * 359.71160 * 8 7 3 10 10 N 1.34780 * 120.00155 * 179.70823 * 8 7 3 11 11 C 1.46501 * 120.00011 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.87426 * 37.39183 * 11 10 8 13 13 C 1.55136 * 110.99092 * 273.54303 * 11 10 8 14 14 C 1.54316 * 103.02142 * 206.21795 * 13 11 10 15 15 N 1.47445 * 107.22955 * 22.28484 * 14 13 11 16 16 C 1.46902 * 110.99993 * 123.25758 * 15 14 13 17 17 C 1.50702 * 109.47027 * 69.87046 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00499 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.72159 * 20 19 17 23 23 N 1.31411 * 119.99899 * 180.27617 * 22 20 19 24 24 Si 1.86800 * 120.00160 * 0.27431 * 22 20 19 25 25 H 1.48508 * 109.46685 * 89.99768 * 24 22 20 26 26 H 1.48494 * 109.47357 * 209.99847 * 24 22 20 27 27 H 1.48494 * 109.47227 * 330.00365 * 24 22 20 28 28 C 1.47847 * 108.56981 * 0.98987 * 15 14 13 29 29 H 1.08996 * 109.47273 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47112 * 300.00039 * 1 2 3 31 31 H 1.09005 * 109.47311 * 59.99783 * 1 2 3 32 32 H 1.09007 * 109.47112 * 239.99961 * 2 1 3 33 33 H 1.09005 * 109.47311 * 120.00217 * 2 1 3 34 34 H 1.07989 * 125.44123 * 179.76063 * 5 4 3 35 35 H 1.07999 * 127.01942 * 179.97438 * 6 5 4 36 36 H 0.97003 * 119.99402 * 359.97438 * 10 8 7 37 37 H 1.09003 * 110.70332 * 87.83536 * 13 11 10 38 38 H 1.08996 * 110.85677 * 324.67301 * 13 11 10 39 39 H 1.08996 * 109.89058 * 262.88273 * 14 13 11 40 40 H 1.08994 * 109.88860 * 141.68888 * 14 13 11 41 41 H 1.09004 * 109.47131 * 309.87290 * 16 15 14 42 42 H 1.08994 * 109.47471 * 189.87039 * 16 15 14 43 43 H 0.97000 * 119.99715 * 359.97438 * 19 17 16 44 44 H 0.97005 * 120.00019 * 180.02562 * 23 22 20 45 45 H 1.09002 * 110.37141 * 94.73522 * 28 15 14 46 46 H 1.09002 * 110.37215 * 217.07516 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2904 2.1588 -1.0840 5 6 2.7291 3.3795 -0.7391 6 6 2.7641 3.4721 0.5991 7 6 2.2984 2.1732 1.1064 8 6 2.1552 1.7666 2.5157 9 8 1.7556 0.6510 2.7892 10 7 2.4671 2.6311 3.5015 11 6 2.3252 2.2268 4.9025 12 1 2.6084 1.1827 5.0359 13 6 0.8816 2.4805 5.4107 14 6 1.0753 2.6645 6.9305 15 7 2.4794 3.0587 7.1473 16 6 2.5624 4.3350 7.8699 17 6 2.1080 4.1369 9.2930 18 8 1.7507 3.0404 9.6686 19 7 2.0986 5.1784 10.1486 20 6 1.6858 4.9980 11.4434 21 1 1.3684 4.0214 11.7780 22 6 1.6816 6.0704 12.3270 23 7 1.2910 5.8964 13.5696 24 14 2.2313 7.7594 11.7485 25 1 1.0610 8.5080 11.2237 26 1 2.8247 8.5041 12.8881 27 1 3.2450 7.6089 10.6739 28 6 3.1513 3.1491 5.8334 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0092 4.1621 -1.4284 35 1 3.0720 4.3262 1.1840 36 1 2.7862 3.5208 3.2833 37 1 0.2439 1.6208 5.2047 38 1 0.4656 3.3831 4.9631 39 1 0.8695 1.7269 7.4468 40 1 0.4099 3.4460 7.2972 41 1 1.9219 5.0705 7.3830 42 1 3.5929 4.6898 7.8636 43 1 2.3847 6.0552 9.8484 44 1 1.2878 6.6452 14.1863 45 1 3.1306 4.1753 5.4665 46 1 4.1785 2.7921 5.9071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267740474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:54 Heat of formation + Delta-G solvation = -45.908542 kcal Electronic energy + Delta-G solvation = -28196.703201 eV Core-core repulsion = 24088.258723 eV Total energy + Delta-G solvation = -4108.444478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.99165 -40.08146 -38.91586 -37.61686 -34.79718 -34.25495 -33.87503 -33.11085 -31.69108 -30.94377 -29.26749 -28.58987 -26.74823 -24.61233 -23.95216 -23.29472 -21.80501 -21.19316 -20.71054 -20.01385 -19.28630 -18.29510 -18.22182 -16.67497 -16.62954 -16.29016 -16.01977 -15.56614 -15.28448 -14.89854 -14.78754 -14.67474 -14.40960 -14.03398 -13.66804 -13.47361 -13.43037 -13.29430 -13.04373 -12.95553 -12.66931 -12.43550 -12.31294 -11.94248 -11.88156 -11.70249 -11.47205 -11.36315 -11.32375 -11.12524 -10.67503 -10.59742 -10.23375 -10.18779 -9.96690 -9.55335 -9.30209 -8.97130 -8.58301 -8.16792 -8.02547 -6.29793 -3.81043 1.00407 1.63100 2.37150 2.88875 3.02094 3.06131 3.08333 3.14734 3.75509 4.00342 4.05879 4.10835 4.35122 4.42043 4.50028 4.63028 4.71534 4.88421 4.89044 4.98659 5.02264 5.10111 5.19508 5.22255 5.25011 5.35896 5.50521 5.52235 5.58005 5.61253 5.67846 5.70336 5.83027 5.83643 5.89356 5.91793 5.95689 6.07165 6.25809 6.43586 6.61276 7.07771 7.11597 7.26878 7.59695 7.99201 8.15803 8.61796 8.96940 9.43826 9.85311 10.83437 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026162 B = 0.001965 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.011334 B =14247.025584 C =14929.624979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C 0.083 3.917 4 O -0.175 6.175 5 C -0.038 4.038 6 C -0.190 4.190 7 C -0.245 4.245 8 C 0.592 3.408 9 O -0.536 6.536 10 N -0.714 5.714 11 C 0.139 3.861 12 H 0.107 0.893 13 C -0.154 4.154 14 C 0.057 3.943 15 N -0.501 5.501 16 C 0.038 3.962 17 C 0.453 3.547 18 O -0.556 6.556 19 N -0.593 5.593 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.038 3.962 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.208 0.792 35 H 0.157 0.843 36 H 0.399 0.601 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.369 0.631 44 H 0.273 0.727 45 H 0.048 0.952 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.454 -2.309 -31.884 32.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C 0.030 3.970 4 O -0.071 6.071 5 C -0.104 4.104 6 C -0.209 4.209 7 C -0.250 4.250 8 C 0.380 3.620 9 O -0.414 6.414 10 N -0.365 5.365 11 C 0.034 3.966 12 H 0.125 0.875 13 C -0.193 4.193 14 C -0.071 4.071 15 N -0.225 5.225 16 C -0.094 4.094 17 C 0.238 3.762 18 O -0.437 6.437 19 N -0.233 5.233 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.163 4.163 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.090 4.090 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.224 0.776 35 H 0.174 0.826 36 H 0.233 0.767 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.202 0.798 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.093 -4.233 -31.157 31.595 hybrid contribution 0.346 3.061 -0.673 3.153 sum 3.440 -1.172 -31.830 32.036 Atomic orbital electron populations 1.21692 0.93185 1.02828 1.02402 1.20428 0.97115 0.86284 1.05196 1.22914 0.96618 0.94397 0.83056 1.83782 1.65050 1.23254 1.35042 1.23873 1.03851 0.86263 0.96420 1.22871 1.05606 0.97797 0.94612 1.21150 1.14028 0.95918 0.93862 1.17164 0.76874 0.84366 0.83610 1.90778 1.46344 1.20339 1.83936 1.45704 1.68032 1.17069 1.05715 1.22112 0.95329 1.00473 0.78727 0.87548 1.23239 0.96978 1.02424 0.96676 1.22731 0.88386 1.02801 0.93181 1.63235 1.14433 1.29099 1.15780 1.22128 1.01902 0.90532 0.94788 1.19623 0.84678 0.85457 0.86446 1.90572 1.50757 1.24485 1.77868 1.42208 1.60463 1.09239 1.11436 1.19425 1.40479 0.99502 0.83760 0.86274 1.25040 0.97728 0.98229 0.95271 1.69623 1.46714 1.32098 1.03800 0.86671 0.79169 0.84603 0.78922 1.19722 1.20202 1.19533 1.23254 0.99187 0.97900 0.88697 0.91194 0.91790 0.92673 0.89983 0.86685 0.77559 0.82578 0.76663 0.90149 0.91523 0.89369 0.92308 0.93157 0.89226 0.79804 0.91655 0.93329 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.89 37.16 0.37 -0.70 16 2 C -0.05 -0.42 5.94 -27.88 -0.17 -0.59 16 3 C 0.08 0.77 6.63 -34.97 -0.23 0.54 16 4 O -0.18 -1.46 10.52 7.65 0.08 -1.38 16 5 C -0.04 -0.23 12.03 29.30 0.35 0.12 16 6 C -0.19 -1.31 10.60 -37.45 -0.40 -1.70 16 7 C -0.25 -2.37 6.31 -103.28 -0.65 -3.02 16 8 C 0.59 6.70 7.81 -12.54 -0.10 6.61 16 9 O -0.54 -7.54 14.59 5.26 0.08 -7.46 16 10 N -0.71 -6.80 5.23 -52.82 -0.28 -7.08 16 11 C 0.14 1.58 3.31 -65.79 -0.22 1.36 16 12 H 0.11 1.39 7.73 -51.93 -0.40 0.99 16 13 C -0.15 -1.89 6.64 -24.91 -0.17 -2.05 16 14 C 0.06 0.88 5.65 -2.84 -0.02 0.86 16 15 N -0.50 -7.85 4.85 -232.69 -1.13 -8.98 16 16 C 0.04 0.63 5.03 -4.97 -0.03 0.60 16 17 C 0.45 10.24 7.43 -10.98 -0.08 10.16 16 18 O -0.56 -14.92 15.12 5.55 0.08 -14.84 16 19 N -0.59 -14.08 5.09 -10.96 -0.06 -14.14 16 20 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 21 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 22 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 23 N -0.88 -25.83 13.96 55.50 0.77 -25.05 16 24 Si 0.88 19.29 27.74 -169.99 -4.72 14.57 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.27 -5.37 6.51 56.52 0.37 -5.00 16 28 C 0.04 0.43 6.31 -2.30 -0.01 0.42 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.12 1.07 6.49 -51.93 -0.34 0.74 16 34 H 0.21 0.43 8.06 -52.49 -0.42 0.01 16 35 H 0.16 0.68 7.74 -52.49 -0.41 0.27 16 36 H 0.40 2.78 7.69 -40.82 -0.31 2.46 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.06 0.97 7.31 -51.93 -0.38 0.59 16 41 H 0.05 0.72 7.96 -51.93 -0.41 0.30 16 42 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 43 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -35.21 382.37 -7.66 -42.87 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -6.66 Total: 10.84 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.59 Total: 4.88 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.69 Total: -55.25 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.24 Total: -23.68 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.72 Total: 14.57 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.21 -7.66 -42.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267740474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.038 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds