Wall clock time and date at job start Tue Mar 31 2020 20:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47387 * 2 1 4 4 O 1.33653 * 125.80093 * 270.14706 * 3 2 1 5 5 C 1.34217 * 110.90974 * 180.26576 * 4 3 2 6 6 C 1.34185 * 109.12068 * 359.75828 * 5 4 3 7 7 C 1.36412 * 125.80284 * 89.99899 * 3 2 1 8 8 C 1.47378 * 127.19096 * 0.02562 * 7 3 2 9 9 O 1.21617 * 120.00320 * 359.71160 * 8 7 3 10 10 N 1.34780 * 120.00155 * 179.70823 * 8 7 3 11 11 C 1.46501 * 120.00011 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.87426 * 37.39183 * 11 10 8 13 13 C 1.55136 * 110.99092 * 273.54303 * 11 10 8 14 14 C 1.54316 * 103.02142 * 206.21795 * 13 11 10 15 15 N 1.47445 * 107.22955 * 22.28484 * 14 13 11 16 16 C 1.46902 * 110.99993 * 123.25758 * 15 14 13 17 17 C 1.50702 * 109.47027 * 69.87046 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00499 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.72159 * 20 19 17 23 23 N 1.31411 * 119.99899 * 180.27617 * 22 20 19 24 24 Si 1.86800 * 120.00160 * 0.27431 * 22 20 19 25 25 H 1.48508 * 109.46685 * 89.99768 * 24 22 20 26 26 H 1.48494 * 109.47357 * 209.99847 * 24 22 20 27 27 H 1.48494 * 109.47227 * 330.00365 * 24 22 20 28 28 C 1.47847 * 108.56981 * 0.98987 * 15 14 13 29 29 H 1.08996 * 109.47273 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47112 * 300.00039 * 1 2 3 31 31 H 1.09005 * 109.47311 * 59.99783 * 1 2 3 32 32 H 1.09007 * 109.47112 * 239.99961 * 2 1 3 33 33 H 1.09005 * 109.47311 * 120.00217 * 2 1 3 34 34 H 1.07989 * 125.44123 * 179.76063 * 5 4 3 35 35 H 1.07999 * 127.01942 * 179.97438 * 6 5 4 36 36 H 0.97003 * 119.99402 * 359.97438 * 10 8 7 37 37 H 1.09003 * 110.70332 * 87.83536 * 13 11 10 38 38 H 1.08996 * 110.85677 * 324.67301 * 13 11 10 39 39 H 1.08996 * 109.89058 * 262.88273 * 14 13 11 40 40 H 1.08994 * 109.88860 * 141.68888 * 14 13 11 41 41 H 1.09004 * 109.47131 * 309.87290 * 16 15 14 42 42 H 1.08994 * 109.47471 * 189.87039 * 16 15 14 43 43 H 0.97000 * 119.99715 * 359.97438 * 19 17 16 44 44 H 0.97005 * 120.00019 * 180.02562 * 23 22 20 45 45 H 1.09002 * 110.37141 * 94.73522 * 28 15 14 46 46 H 1.09002 * 110.37215 * 217.07516 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2904 2.1588 -1.0840 5 6 2.7291 3.3795 -0.7391 6 6 2.7641 3.4721 0.5991 7 6 2.2984 2.1732 1.1064 8 6 2.1552 1.7666 2.5157 9 8 1.7556 0.6510 2.7892 10 7 2.4671 2.6311 3.5015 11 6 2.3252 2.2268 4.9025 12 1 2.6084 1.1827 5.0359 13 6 0.8816 2.4805 5.4107 14 6 1.0753 2.6645 6.9305 15 7 2.4794 3.0587 7.1473 16 6 2.5624 4.3350 7.8699 17 6 2.1080 4.1369 9.2930 18 8 1.7507 3.0404 9.6686 19 7 2.0986 5.1784 10.1486 20 6 1.6858 4.9980 11.4434 21 1 1.3684 4.0214 11.7780 22 6 1.6816 6.0704 12.3270 23 7 1.2910 5.8964 13.5696 24 14 2.2313 7.7594 11.7485 25 1 1.0610 8.5080 11.2237 26 1 2.8247 8.5041 12.8881 27 1 3.2450 7.6089 10.6739 28 6 3.1513 3.1491 5.8334 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0092 4.1621 -1.4284 35 1 3.0720 4.3262 1.1840 36 1 2.7862 3.5208 3.2833 37 1 0.2439 1.6208 5.2047 38 1 0.4656 3.3831 4.9631 39 1 0.8695 1.7269 7.4468 40 1 0.4099 3.4460 7.2972 41 1 1.9219 5.0705 7.3830 42 1 3.5929 4.6898 7.8636 43 1 2.3847 6.0552 9.8484 44 1 1.2878 6.6452 14.1863 45 1 3.1306 4.1753 5.4665 46 1 4.1785 2.7921 5.9071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267740474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:53 Heat of formation + Delta-G solvation = -74.079742 kcal Electronic energy + Delta-G solvation = -28197.924796 eV Core-core repulsion = 24088.258723 eV Total energy + Delta-G solvation = -4109.666073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.55325 -41.11677 -40.29880 -39.03242 -36.06002 -35.54084 -34.92673 -33.81205 -33.68910 -32.08716 -29.95143 -29.54268 -28.22550 -25.94296 -25.09608 -23.93624 -22.54332 -22.34668 -21.66490 -21.14189 -20.73639 -20.10015 -18.90587 -17.69930 -17.61072 -17.27293 -17.12702 -16.74292 -16.61596 -16.10242 -15.76351 -15.56790 -15.35115 -15.29749 -15.03571 -14.68131 -14.50779 -14.42471 -14.14235 -13.92454 -13.80761 -13.57366 -13.38179 -13.25233 -13.00417 -12.76295 -12.55862 -12.43573 -12.39756 -12.35689 -11.97708 -11.96713 -11.79445 -11.48646 -11.07718 -10.83029 -10.40706 -10.22864 -10.15481 -9.54458 -9.24844 -8.39648 -6.00572 0.31981 1.14697 1.30806 1.36883 1.45937 1.78627 1.98748 2.10613 2.24630 2.30257 2.73944 3.16349 3.20532 3.50254 3.56395 3.70969 3.78443 3.89330 4.01922 4.14703 4.16658 4.25676 4.28985 4.31803 4.39214 4.44263 4.47581 4.60012 4.63873 4.74890 4.83735 4.93326 4.94611 4.98822 5.02040 5.09305 5.17135 5.26973 5.38379 5.45126 5.54378 5.87607 5.96538 6.05086 6.05816 6.52969 6.61847 6.90659 7.20010 7.41996 8.00358 8.78187 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026162 B = 0.001965 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.011334 B =14247.025584 C =14929.624979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 C 0.069 3.931 4 O -0.183 6.183 5 C -0.032 4.032 6 C -0.195 4.195 7 C -0.266 4.266 8 C 0.587 3.413 9 O -0.573 6.573 10 N -0.698 5.698 11 C 0.147 3.853 12 H 0.083 0.917 13 C -0.140 4.140 14 C 0.061 3.939 15 N -0.530 5.530 16 C 0.052 3.948 17 C 0.449 3.551 18 O -0.609 6.609 19 N -0.593 5.593 20 C -0.327 4.327 21 H 0.052 0.948 22 C -0.019 4.019 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.257 1.257 26 H -0.277 1.277 27 H -0.228 1.228 28 C 0.047 3.953 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.248 0.752 35 H 0.184 0.816 36 H 0.416 0.584 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.126 0.874 43 H 0.390 0.610 44 H 0.278 0.722 45 H 0.085 0.915 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.451 1.529 -35.799 36.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.091 4.091 3 C 0.016 3.984 4 O -0.079 6.079 5 C -0.097 4.097 6 C -0.214 4.214 7 C -0.270 4.270 8 C 0.377 3.623 9 O -0.454 6.454 10 N -0.350 5.350 11 C 0.041 3.959 12 H 0.101 0.899 13 C -0.180 4.180 14 C -0.067 4.067 15 N -0.255 5.255 16 C -0.080 4.080 17 C 0.237 3.763 18 O -0.492 6.492 19 N -0.235 5.235 20 C -0.456 4.456 21 H 0.071 0.929 22 C -0.217 4.217 23 N -0.577 5.577 24 Si 0.787 3.213 25 H -0.182 1.182 26 H -0.202 1.202 27 H -0.151 1.151 28 C -0.081 4.081 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.264 0.736 35 H 0.201 0.799 36 H 0.253 0.747 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.143 0.857 43 H 0.226 0.774 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.117 -0.371 -35.117 35.490 hybrid contribution -0.314 1.716 0.556 1.831 sum 4.803 1.346 -34.561 34.919 Atomic orbital electron populations 1.21649 0.92983 1.03329 1.01646 1.20399 0.97268 0.86273 1.05152 1.23067 0.97005 0.94887 0.83458 1.83794 1.65132 1.24190 1.34742 1.24724 1.02013 0.85840 0.97096 1.23191 1.05680 0.97335 0.95182 1.21209 1.15265 0.97742 0.92834 1.17503 0.76234 0.83985 0.84619 1.90765 1.48041 1.22000 1.84580 1.45478 1.67473 1.17614 1.04455 1.21829 0.94572 0.99604 0.79886 0.89867 1.23096 0.97698 1.02746 0.94446 1.22535 0.88651 1.00661 0.94892 1.63088 1.14425 1.29407 1.18568 1.22052 1.04285 0.91632 0.89994 1.20978 0.82343 0.84193 0.88815 1.90558 1.52426 1.26754 1.79505 1.42018 1.60941 1.10669 1.09871 1.18982 1.42525 0.97513 0.86572 0.92944 1.26166 0.96920 1.03790 0.94829 1.69817 1.47952 1.34232 1.05748 0.85335 0.79965 0.76495 0.79521 1.18168 1.20174 1.15105 1.23271 0.98770 0.99818 0.86214 0.90138 0.94038 0.91734 0.88088 0.88598 0.73636 0.79868 0.74669 0.91350 0.89690 0.92941 0.93597 0.89631 0.85662 0.77443 0.91214 0.89685 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.89 71.98 0.71 -1.36 16 2 C -0.05 -0.86 5.94 29.85 0.18 -0.68 16 3 C 0.07 1.21 6.63 25.26 0.17 1.38 16 4 O -0.18 -2.64 10.52 4.44 0.05 -2.59 16 5 C -0.03 -0.27 12.03 66.89 0.80 0.53 16 6 C -0.20 -2.03 10.60 23.65 0.25 -1.78 16 7 C -0.27 -4.74 6.31 -18.99 -0.12 -4.86 16 8 C 0.59 12.85 7.81 86.65 0.68 13.53 16 9 O -0.57 -16.61 14.59 -4.08 -0.06 -16.67 16 10 N -0.70 -11.71 5.23 -439.29 -2.30 -14.00 16 11 C 0.15 3.13 3.31 46.37 0.15 3.28 16 12 H 0.08 2.20 7.73 -2.39 -0.02 2.18 16 13 C -0.14 -3.35 6.64 31.77 0.21 -3.14 16 14 C 0.06 1.90 5.65 86.65 0.49 2.39 16 15 N -0.53 -15.72 4.85 -890.10 -4.32 -20.04 16 16 C 0.05 1.52 5.03 85.56 0.43 1.95 16 17 C 0.45 20.25 7.43 87.66 0.65 20.90 16 18 O -0.61 -34.28 15.12 -3.07 -0.05 -34.32 16 19 N -0.59 -27.76 5.09 -306.97 -1.56 -29.33 16 20 C -0.33 -19.23 10.16 84.04 0.85 -18.38 16 21 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 22 C -0.02 -1.05 5.50 84.93 0.47 -0.58 16 23 N -0.94 -56.87 13.96 21.66 0.30 -56.56 16 24 Si 0.97 38.37 27.74 68.60 1.90 40.27 16 25 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 26 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 27 H -0.23 -7.45 6.51 99.48 0.65 -6.80 16 28 C 0.05 0.90 6.31 86.77 0.55 1.45 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.10 1.90 6.49 -2.38 -0.02 1.88 16 34 H 0.25 -0.18 8.06 -2.92 -0.02 -0.21 16 35 H 0.18 0.73 7.74 -2.91 -0.02 0.71 16 36 H 0.42 4.13 7.69 -92.71 -0.71 3.42 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.05 1.52 7.31 -2.39 -0.02 1.50 16 41 H 0.09 1.99 7.96 -2.38 -0.02 1.97 16 42 H 0.13 2.87 8.07 -2.39 -0.02 2.86 16 43 H 0.39 14.84 5.76 -92.71 -0.53 14.31 16 44 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 45 H 0.09 1.08 7.67 -2.39 -0.02 1.06 16 46 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -85.88 382.37 0.15 -85.72 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.29 Total: 32.89 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 6.47 Total: 14.63 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -7.88 Total: -119.93 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -0.06 Total: -53.59 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.90 Total: 40.27 kcal Total: -85.88 0.15 -85.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267740474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.644 kcal (2) G-P(sol) polarization free energy of solvation -85.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds