Wall clock time and date at job start Tue Mar 31 2020 19:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30260 * 125.61737 * 2 1 4 4 C 1.34482 * 108.69877 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.16208 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46870 * 275.01932 * 5 4 3 7 7 C 1.48043 * 110.99911 * 190.00199 * 6 5 4 8 8 C 1.53505 * 86.04578 * 137.28914 * 7 6 5 9 9 C 1.48047 * 111.00037 * 289.44330 * 6 5 4 10 10 C 1.52772 * 113.50122 * 222.18416 * 8 7 6 11 11 O 1.43385 * 108.25163 * 273.87715 * 10 8 7 12 12 C 1.42822 * 113.33716 * 294.36066 * 11 10 8 13 13 C 1.50264 * 110.55602 * 51.08432 * 12 11 10 14 14 O 1.21279 * 118.95665 * 161.85938 * 13 12 11 15 15 N 1.34265 * 122.07727 * 342.10215 * 13 12 11 16 16 C 1.46499 * 119.38529 * 181.71623 * 15 13 12 17 17 C 1.53000 * 109.46840 * 269.73142 * 16 15 13 18 18 C 1.50703 * 109.46912 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99776 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00001 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00114 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46725 * 60.00489 * 22 20 18 24 24 H 1.48505 * 109.46988 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47116 * 300.00464 * 22 20 18 26 26 C 1.34332 * 107.66768 * 0.26202 * 4 3 2 27 27 O 1.33965 * 125.62047 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47421 * 90.00059 * 1 2 3 29 29 H 1.09004 * 109.47136 * 209.99874 * 1 2 3 30 30 H 1.09002 * 109.47570 * 329.99833 * 1 2 3 31 31 H 1.09005 * 109.46803 * 155.02275 * 5 4 3 32 32 H 1.08997 * 109.47302 * 35.01829 * 5 4 3 33 33 H 1.08994 * 113.78400 * 23.00820 * 7 6 5 34 34 H 1.08996 * 113.88529 * 251.57951 * 7 6 5 35 35 H 1.09005 * 113.78103 * 108.42097 * 9 6 5 36 36 H 1.09002 * 113.78215 * 336.99406 * 9 6 5 37 37 H 1.08991 * 109.70554 * 33.57019 * 10 8 7 38 38 H 1.09000 * 109.70821 * 154.18936 * 10 8 7 39 39 H 1.08999 * 109.27217 * 171.56208 * 12 11 10 40 40 H 1.08998 * 109.26981 * 291.04041 * 12 11 10 41 41 H 1.09002 * 109.47391 * 149.72812 * 16 15 13 42 42 H 1.09001 * 109.46813 * 29.72868 * 16 15 13 43 43 H 1.09001 * 109.47194 * 299.99493 * 17 16 15 44 44 H 1.08992 * 109.47399 * 59.99666 * 17 16 15 45 45 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 46 46 H 1.07998 * 126.44103 * 179.74131 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5728 0.0013 6 7 5.0763 1.9640 -1.3782 7 6 6.3848 2.6532 -1.4448 8 6 6.6445 1.8111 -2.7017 9 6 5.6168 0.8175 -2.1432 10 6 8.0623 1.2467 -2.7747 11 8 8.9086 2.2348 -3.3773 12 6 8.5826 2.5029 -4.7417 13 6 7.1160 2.7969 -4.8858 14 8 6.7258 3.3613 -5.8858 15 7 6.2248 2.4588 -3.9402 16 6 4.8037 2.7398 -4.1585 17 6 4.4691 4.1297 -3.6132 18 6 3.0074 4.4191 -3.8382 19 1 2.3797 3.6849 -4.3215 20 6 2.4711 5.6206 -3.4263 21 7 3.2353 6.5143 -2.8374 22 14 0.6593 5.9796 -3.7059 23 1 -0.1613 4.9607 -3.0032 24 1 0.3346 7.3285 -3.1765 25 1 0.3647 5.9351 -5.1607 26 6 3.5697 -0.6756 -0.0049 27 8 2.2872 -1.0890 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 5.6068 1.0461 0.4356 32 1 4.5416 2.4638 0.5910 33 1 7.0486 2.4174 -0.6130 34 1 6.3108 3.7229 -1.6400 35 1 4.9298 0.4271 -2.8940 36 1 6.0533 0.0385 -1.5180 37 1 8.4196 1.0197 -1.7703 38 1 8.0664 0.3404 -3.3803 39 1 9.1597 3.3605 -5.0877 40 1 8.8327 1.6330 -5.3490 41 1 4.2019 1.9922 -3.6418 42 1 4.5865 2.7065 -5.2261 43 1 4.6863 4.1630 -2.5455 44 1 5.0709 4.8772 -4.1298 45 1 2.8579 7.3595 -2.5472 46 1 4.4468 -1.3057 -0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272725466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:32 Heat of formation + Delta-G solvation = 5.175455 kcal Electronic energy + Delta-G solvation = -30578.974152 eV Core-core repulsion = 26472.744843 eV Total energy + Delta-G solvation = -4106.229309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.26586 -41.29662 -38.91121 -37.39580 -35.26264 -34.37324 -32.92548 -32.37746 -30.63991 -29.64872 -28.54341 -27.25965 -26.57827 -26.10529 -24.13424 -23.34900 -21.59091 -21.06014 -20.79454 -20.60593 -18.13176 -17.53945 -17.05780 -16.81390 -16.62719 -16.08688 -15.86776 -15.56721 -15.24608 -14.83565 -14.54573 -14.37940 -14.21150 -14.06705 -13.62821 -13.53133 -13.15001 -13.04167 -12.74162 -12.61976 -12.45167 -12.17914 -12.09682 -11.64387 -11.52696 -11.35640 -11.11835 -10.88155 -10.78733 -10.73523 -10.56885 -10.36398 -10.29677 -9.69612 -9.55846 -9.19670 -8.88561 -8.74522 -8.50783 -8.12566 -8.02555 -5.80840 -3.79960 1.47460 2.72467 2.77902 2.86036 3.16606 3.46113 3.48436 3.51960 3.62201 3.97178 4.01654 4.37757 4.49974 4.59898 4.63203 4.74262 4.79001 4.94362 5.12524 5.18953 5.20434 5.26289 5.31313 5.34953 5.35315 5.42373 5.50531 5.56261 5.59068 5.64929 5.80177 5.93862 5.98854 6.14818 6.31859 6.33918 6.48800 6.65791 6.72018 6.94452 7.08942 7.14557 7.78305 7.88662 7.90356 8.15351 8.23242 8.48542 8.63672 9.24410 9.80864 11.31156 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007298 B = 0.005917 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3835.550652 B = 4731.246491 C = 7769.324641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.186 3.814 3 N -0.454 5.454 4 C 0.011 3.989 5 C 0.100 3.900 6 N -0.439 5.439 7 C 0.001 3.999 8 C 0.111 3.889 9 C -0.005 4.005 10 C 0.063 3.937 11 O -0.368 6.368 12 C 0.049 3.951 13 C 0.480 3.520 14 O -0.533 6.533 15 N -0.571 5.571 16 C 0.120 3.880 17 C 0.022 3.978 18 C -0.504 4.504 19 H 0.049 0.951 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.888 3.112 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.279 1.279 26 C -0.086 4.086 27 O -0.208 6.208 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.128 0.872 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.009 0.991 45 H 0.257 0.743 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.984 -18.572 8.000 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.021 4.021 3 N -0.183 5.183 4 C -0.109 4.109 5 C -0.028 4.028 6 N -0.161 5.161 7 C -0.129 4.129 8 C 0.023 3.977 9 C -0.134 4.134 10 C -0.015 4.015 11 O -0.285 6.285 12 C -0.031 4.031 13 C 0.267 3.733 14 O -0.410 6.410 15 N -0.302 5.302 16 C 0.001 3.999 17 C -0.016 4.016 18 C -0.543 4.543 19 H 0.067 0.933 20 C -0.140 4.140 21 N -0.536 5.536 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.205 1.205 26 C -0.158 4.158 27 O -0.095 6.095 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.027 0.973 45 H 0.067 0.933 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.047 -17.075 7.430 19.579 hybrid contribution -0.275 -0.961 0.209 1.021 sum 5.771 -18.036 7.639 20.419 Atomic orbital electron populations 1.20241 0.81499 1.04771 1.04853 1.26387 0.96579 0.78559 1.00604 1.70475 1.01540 1.29658 1.16668 1.21504 0.93269 0.91938 1.04238 1.20917 0.91179 0.97873 0.92859 1.68945 1.25784 1.11822 1.09575 1.24529 0.89787 1.02965 0.95572 1.22130 0.94275 0.94454 0.86890 1.24358 0.96335 0.94263 0.98485 1.22976 0.87593 0.90913 0.99978 1.88138 1.55631 1.59857 1.24903 1.22796 0.92719 1.03522 0.84022 1.20920 0.89073 0.79646 0.83678 1.90762 1.79800 1.40895 1.29542 1.47505 1.09558 1.57847 1.15301 1.21957 0.76003 1.01433 1.00538 1.19343 0.95949 0.89076 0.97248 1.20981 0.94421 1.00989 1.37928 0.93274 1.24894 0.97371 0.96320 0.95435 1.69954 1.35216 1.07502 1.40907 0.86719 0.86158 0.77186 0.78262 1.20295 1.21476 1.20522 1.24613 0.84997 0.96018 1.10138 1.84402 1.16803 1.38000 1.70308 0.88845 0.89718 0.88051 0.92782 0.88399 0.90567 0.87155 0.88633 0.90585 0.86956 0.91755 0.85422 0.89970 0.90718 0.91838 0.94588 0.97252 0.93297 0.77475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 36.00 0.38 -0.16 16 2 C 0.19 2.59 8.34 -12.95 -0.11 2.48 16 3 N -0.45 -7.80 11.29 -7.36 -0.08 -7.88 16 4 C 0.01 0.16 6.19 -82.81 -0.51 -0.35 16 5 C 0.10 1.34 5.36 -4.98 -0.03 1.32 16 6 N -0.44 -6.85 4.44 -241.78 -1.07 -7.93 16 7 C 0.00 0.01 6.48 -2.94 -0.02 -0.01 16 8 C 0.11 1.52 1.56 -135.15 -0.21 1.31 16 9 C 0.00 -0.06 5.90 -2.95 -0.02 -0.07 16 10 C 0.06 0.64 6.09 37.04 0.23 0.87 16 11 O -0.37 -4.63 10.84 -35.23 -0.38 -5.01 16 12 C 0.05 0.65 6.93 35.79 0.25 0.89 16 13 C 0.48 8.89 7.64 -11.43 -0.09 8.80 16 14 O -0.53 -12.26 16.48 5.56 0.09 -12.17 16 15 N -0.57 -10.43 2.67 -162.12 -0.43 -10.86 16 16 C 0.12 2.70 4.50 -4.04 -0.02 2.69 16 17 C 0.02 0.59 5.01 -27.88 -0.14 0.45 16 18 C -0.50 -15.13 9.11 -34.44 -0.31 -15.44 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 21 N -0.90 -28.25 13.29 55.43 0.74 -27.52 16 22 Si 0.89 23.02 29.54 -169.99 -5.02 18.00 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 25 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 26 C -0.09 -1.00 11.92 29.35 0.35 -0.65 16 27 O -0.21 -2.68 10.78 5.37 0.06 -2.62 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.51 7.70 -51.93 -0.40 0.11 16 32 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.08 0.82 7.55 -51.93 -0.39 0.43 16 34 H 0.11 2.07 6.72 -51.93 -0.35 1.72 16 35 H 0.10 1.34 6.92 -51.93 -0.36 0.98 16 36 H 0.08 0.63 7.73 -51.93 -0.40 0.23 16 37 H 0.11 0.81 7.86 -51.93 -0.41 0.41 16 38 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 39 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.63 5.57 -51.93 -0.29 1.34 16 42 H 0.06 1.54 7.34 -51.93 -0.38 1.16 16 43 H 0.04 1.01 5.36 -51.93 -0.28 0.73 16 44 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.21 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -39.15 373.60 -7.43 -46.58 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.60 Total: -0.07 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -0.35 Total: 3.85 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.85 Total: -54.19 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.23 Total: -19.80 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.15 -7.43 -46.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272725466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.750 kcal (2) G-P(sol) polarization free energy of solvation -39.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds