Wall clock time and date at job start Tue Mar 31 2020 19:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30255 * 125.61998 * 2 1 4 4 C 1.34480 * 108.70135 * 180.14592 * 3 2 1 5 5 C 1.50693 * 126.16758 * 179.82831 * 4 3 2 6 6 N 1.46902 * 109.47043 * 274.68839 * 5 4 3 7 7 C 1.48058 * 111.00164 * 190.00005 * 6 5 4 8 8 C 1.53382 * 86.02684 * 222.76487 * 7 6 5 9 9 C 1.48055 * 111.00025 * 90.54652 * 6 5 4 10 10 C 1.52556 * 113.83989 * 138.14175 * 8 7 6 11 11 N 1.46276 * 109.56890 * 176.52132 * 10 8 7 12 12 C 1.46494 * 118.71725 * 163.64142 * 11 10 8 13 13 C 1.53003 * 109.46742 * 90.00506 * 12 11 10 14 14 C 1.50704 * 109.46823 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00114 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31524 * 119.99686 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00323 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46764 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47276 * 119.99721 * 18 16 14 21 21 H 1.48503 * 109.46823 * 240.00047 * 18 16 14 22 22 C 1.33720 * 122.56653 * 343.93104 * 11 10 8 23 23 O 1.21279 * 118.38397 * 183.21154 * 22 11 10 24 24 C 1.50173 * 123.23672 * 3.22239 * 22 11 10 25 25 O 1.42687 * 113.79405 * 268.80012 * 8 7 6 26 26 C 1.34333 * 107.66619 * 359.56333 * 4 3 2 27 27 O 1.33970 * 125.61791 * 179.65778 * 2 1 3 28 28 H 1.09000 * 109.47380 * 180.31800 * 1 2 3 29 29 H 1.09005 * 109.47326 * 300.31854 * 1 2 3 30 30 H 1.09000 * 109.46984 * 60.31456 * 1 2 3 31 31 H 1.09000 * 109.47289 * 154.68896 * 5 4 3 32 32 H 1.09007 * 109.47309 * 34.68492 * 5 4 3 33 33 H 1.08997 * 113.78571 * 108.48910 * 7 6 5 34 34 H 1.08999 * 113.78282 * 337.04339 * 7 6 5 35 35 H 1.09005 * 113.78441 * 22.95966 * 9 6 5 36 36 H 1.09002 * 113.78888 * 251.50738 * 9 6 5 37 37 H 1.08997 * 109.45851 * 56.49415 * 10 8 7 38 38 H 1.09002 * 109.44294 * 296.53933 * 10 8 7 39 39 H 1.09000 * 109.47241 * 209.99891 * 12 11 10 40 40 H 1.09000 * 109.47665 * 330.00539 * 12 11 10 41 41 H 1.09000 * 109.46750 * 299.99685 * 13 12 11 42 42 H 1.08999 * 109.47281 * 60.00367 * 13 12 11 43 43 H 0.96998 * 119.99369 * 179.97438 * 17 16 14 44 44 H 1.08990 * 109.35247 * 222.12997 * 24 22 11 45 45 H 1.08999 * 109.22548 * 102.50100 * 24 22 11 46 46 H 1.08001 * 126.44421 * 180.24392 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 -0.0032 5 6 4.7570 1.5726 -0.0080 6 7 5.0765 1.9553 -1.3899 7 6 6.3852 2.6440 -1.4607 8 6 5.6986 3.6212 -2.4232 9 6 4.3750 3.2022 -1.7708 10 6 6.0671 5.0823 -2.1853 11 7 5.4294 5.9200 -3.2007 12 6 5.3400 7.3636 -2.9677 13 6 6.5839 8.0498 -3.5358 14 6 6.4923 9.5347 -3.2954 15 1 5.6326 9.9477 -2.7886 16 6 7.5059 10.3661 -3.7226 17 7 8.5530 9.8631 -4.3394 18 14 7.3927 12.2066 -3.4241 19 1 6.1248 12.5161 -2.7155 20 1 8.5436 12.6453 -2.5947 21 1 7.4191 12.9216 -4.7254 22 6 4.9198 5.4190 -4.3309 23 8 4.4611 6.1892 -5.1477 24 6 4.8873 3.9494 -4.6386 25 8 5.8064 3.2481 -3.7962 26 6 3.5697 -0.6757 0.0045 27 8 2.2872 -1.0890 0.0065 28 1 -0.3634 -1.0276 0.0057 29 1 -0.3634 0.5188 0.8871 30 1 -0.3633 0.5089 -0.8928 31 1 5.6068 1.0486 0.4295 32 1 4.5417 2.4673 0.5762 33 1 7.1708 2.0483 -1.9255 34 1 6.6943 3.0984 -0.5194 35 1 4.0880 3.8222 -0.9214 36 1 3.5631 3.0503 -2.4820 37 1 7.1492 5.1984 -2.2462 38 1 5.7245 5.3865 -1.1963 39 1 4.4510 7.7569 -3.4607 40 1 5.2764 7.5555 -1.8966 41 1 7.4729 7.6565 -3.0427 42 1 6.6475 7.8580 -4.6069 43 1 9.2659 10.4480 -4.6402 44 1 5.1616 3.7927 -5.6817 45 1 3.8799 3.5695 -4.4691 46 1 4.4469 -1.3059 0.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272726735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:26 Heat of formation + Delta-G solvation = -4.422149 kcal Electronic energy + Delta-G solvation = -28985.434183 eV Core-core repulsion = 24878.788691 eV Total energy + Delta-G solvation = -4106.645493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.60596 -41.33339 -39.25549 -36.80610 -35.45703 -35.15116 -33.12753 -32.92031 -30.83957 -29.98748 -28.49468 -27.41652 -26.58739 -26.42999 -24.52086 -23.62978 -21.87887 -21.63702 -21.09068 -20.12593 -18.44122 -17.45875 -17.38491 -17.08892 -16.76924 -16.20350 -15.96677 -15.79772 -15.42721 -15.01750 -14.89796 -14.45955 -14.36988 -14.13713 -13.92011 -13.52451 -13.45700 -13.14723 -13.01247 -12.83803 -12.76546 -12.60116 -12.25886 -12.13500 -11.62860 -11.61950 -11.32923 -11.30792 -10.98343 -10.87741 -10.81249 -10.63832 -10.19865 -9.89581 -9.82639 -9.33840 -9.19650 -9.00193 -8.92010 -8.35289 -8.10052 -6.00152 -4.03281 1.16792 2.30235 2.46708 2.90799 3.16184 3.31678 3.37875 3.39943 3.43723 3.55239 3.77514 4.20176 4.26241 4.35586 4.46736 4.56879 4.71667 4.77750 4.93118 4.97277 4.99142 5.09661 5.15687 5.17410 5.21369 5.30544 5.35951 5.40803 5.44199 5.52339 5.53876 5.59450 5.62036 5.78387 5.94477 6.00386 6.06971 6.50140 6.59112 6.70857 6.85094 6.91526 7.46256 7.60049 7.72225 7.93347 8.00342 8.35726 8.52645 9.03487 9.60433 11.11340 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020769 B = 0.002253 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.843620 B =12425.825304 C =12501.559595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.187 3.813 3 N -0.477 5.477 4 C 0.000 4.000 5 C 0.098 3.902 6 N -0.466 5.466 7 C 0.026 3.974 8 C 0.071 3.929 9 C -0.008 4.008 10 C 0.100 3.900 11 N -0.596 5.596 12 C 0.114 3.886 13 C 0.014 3.986 14 C -0.519 4.519 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.480 3.520 23 O -0.538 6.538 24 C 0.052 3.948 25 O -0.336 6.336 26 C -0.063 4.063 27 O -0.205 6.205 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.015 0.985 42 H 0.023 0.977 43 H 0.260 0.740 44 H 0.129 0.871 45 H 0.084 0.916 46 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 -24.635 12.018 29.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.020 4.020 3 N -0.207 5.207 4 C -0.119 4.119 5 C -0.031 4.031 6 N -0.188 5.188 7 C -0.102 4.102 8 C 0.029 3.971 9 C -0.137 4.137 10 C -0.024 4.024 11 N -0.329 5.329 12 C -0.007 4.007 13 C -0.024 4.024 14 C -0.558 4.558 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.266 3.734 23 O -0.416 6.416 24 C -0.027 4.027 25 O -0.253 6.253 26 C -0.134 4.134 27 O -0.092 6.092 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.033 0.967 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.147 0.853 45 H 0.102 0.898 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.834 -24.369 11.098 28.886 hybrid contribution 0.445 1.141 0.752 1.437 sum -10.390 -23.228 11.850 28.070 Atomic orbital electron populations 1.20241 0.81400 1.04618 1.05116 1.26301 0.96525 0.78669 1.00503 1.70314 1.01707 1.30325 1.18377 1.21420 0.92652 0.92598 1.05273 1.20925 0.92771 0.97706 0.91680 1.68600 1.03544 1.26542 1.20135 1.23978 0.94360 0.94311 0.97573 1.22917 0.96650 0.93212 0.84272 1.24579 0.97560 0.90788 1.00731 1.21967 0.99618 0.88131 0.92667 1.47663 1.56902 1.09668 1.18658 1.21956 1.02560 0.76173 0.99985 1.19355 0.91227 0.94722 0.97062 1.21123 1.05042 0.91838 1.37821 0.92501 1.25013 0.95382 0.98890 0.95097 1.69993 1.08795 1.35133 1.39250 0.86500 0.77945 0.85384 0.77948 1.19690 1.21025 1.20957 1.20670 0.79029 0.91532 0.82125 1.90760 1.47105 1.58680 1.45046 1.22791 0.95318 0.87681 0.96908 1.88093 1.58722 1.63375 1.15143 1.24729 0.84795 0.96110 1.07783 1.84445 1.17023 1.37803 1.69902 0.89466 0.88564 0.88489 0.88871 0.91677 0.87389 0.89087 0.89619 0.88923 0.90037 0.89766 0.90648 0.91823 0.96675 0.95887 0.93023 0.85297 0.89783 0.76895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.00 0.38 0.10 16 2 C 0.19 1.75 8.34 -12.95 -0.11 1.64 16 3 N -0.48 -5.43 11.29 -7.36 -0.08 -5.51 16 4 C 0.00 0.01 6.67 -82.81 -0.55 -0.55 16 5 C 0.10 0.83 5.34 -4.98 -0.03 0.80 16 6 N -0.47 -4.70 6.14 -242.41 -1.49 -6.18 16 7 C 0.03 0.24 7.36 -2.99 -0.02 0.22 16 8 C 0.07 0.85 1.16 -90.52 -0.10 0.74 16 9 C -0.01 -0.09 7.07 -2.99 -0.02 -0.11 16 10 C 0.10 1.39 5.89 -4.39 -0.03 1.36 16 11 N -0.60 -10.88 2.83 -174.67 -0.50 -11.38 16 12 C 0.11 2.44 5.21 -4.04 -0.02 2.42 16 13 C 0.01 0.38 5.29 -27.88 -0.15 0.23 16 14 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 18 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.48 9.06 7.57 -11.71 -0.09 8.97 16 23 O -0.54 -12.47 16.33 5.56 0.09 -12.38 16 24 C 0.05 0.75 6.66 35.75 0.24 0.99 16 25 O -0.34 -4.73 10.66 -35.23 -0.38 -5.10 16 26 C -0.06 -0.53 12.08 29.35 0.35 -0.18 16 27 O -0.21 -1.94 10.78 5.36 0.06 -1.89 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.07 0.55 7.38 -51.93 -0.38 0.17 16 33 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.09 0.61 7.88 -51.93 -0.41 0.20 16 35 H 0.09 0.90 7.25 -51.93 -0.38 0.52 16 36 H 0.09 1.15 7.01 -51.93 -0.36 0.79 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 0.98 7.76 -51.93 -0.40 0.58 16 39 H 0.08 1.73 7.29 -51.93 -0.38 1.36 16 40 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 45 H 0.08 1.05 7.15 -51.93 -0.37 0.68 16 46 H 0.21 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -37.47 382.88 -8.23 -45.70 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.86 Total: -2.29 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -0.56 Total: 2.97 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -1.33 Total: -49.72 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.23 Total: -19.37 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.47 -8.23 -45.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272726735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.279 kcal (2) G-P(sol) polarization free energy of solvation -37.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds