Wall clock time and date at job start Tue Mar 31 2020 19:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30255 * 125.61998 * 2 1 4 4 C 1.34480 * 108.70135 * 180.14592 * 3 2 1 5 5 C 1.50693 * 126.16758 * 179.82831 * 4 3 2 6 6 N 1.46902 * 109.47043 * 274.68839 * 5 4 3 7 7 C 1.48058 * 111.00164 * 190.00005 * 6 5 4 8 8 C 1.53382 * 86.02684 * 222.76487 * 7 6 5 9 9 C 1.48055 * 111.00025 * 90.54652 * 6 5 4 10 10 C 1.52556 * 113.83989 * 138.14175 * 8 7 6 11 11 N 1.46276 * 109.56890 * 176.52132 * 10 8 7 12 12 C 1.46494 * 118.71725 * 163.64142 * 11 10 8 13 13 C 1.53003 * 109.46742 * 90.00506 * 12 11 10 14 14 C 1.50704 * 109.46823 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00114 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31524 * 119.99686 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00323 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46764 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47276 * 119.99721 * 18 16 14 21 21 H 1.48503 * 109.46823 * 240.00047 * 18 16 14 22 22 C 1.33720 * 122.56653 * 343.93104 * 11 10 8 23 23 O 1.21279 * 118.38397 * 183.21154 * 22 11 10 24 24 C 1.50173 * 123.23672 * 3.22239 * 22 11 10 25 25 O 1.42687 * 113.79405 * 268.80012 * 8 7 6 26 26 C 1.34333 * 107.66619 * 359.56333 * 4 3 2 27 27 O 1.33970 * 125.61791 * 179.65778 * 2 1 3 28 28 H 1.09000 * 109.47380 * 180.31800 * 1 2 3 29 29 H 1.09005 * 109.47326 * 300.31854 * 1 2 3 30 30 H 1.09000 * 109.46984 * 60.31456 * 1 2 3 31 31 H 1.09000 * 109.47289 * 154.68896 * 5 4 3 32 32 H 1.09007 * 109.47309 * 34.68492 * 5 4 3 33 33 H 1.08997 * 113.78571 * 108.48910 * 7 6 5 34 34 H 1.08999 * 113.78282 * 337.04339 * 7 6 5 35 35 H 1.09005 * 113.78441 * 22.95966 * 9 6 5 36 36 H 1.09002 * 113.78888 * 251.50738 * 9 6 5 37 37 H 1.08997 * 109.45851 * 56.49415 * 10 8 7 38 38 H 1.09002 * 109.44294 * 296.53933 * 10 8 7 39 39 H 1.09000 * 109.47241 * 209.99891 * 12 11 10 40 40 H 1.09000 * 109.47665 * 330.00539 * 12 11 10 41 41 H 1.09000 * 109.46750 * 299.99685 * 13 12 11 42 42 H 1.08999 * 109.47281 * 60.00367 * 13 12 11 43 43 H 0.96998 * 119.99369 * 179.97438 * 17 16 14 44 44 H 1.08990 * 109.35247 * 222.12997 * 24 22 11 45 45 H 1.08999 * 109.22548 * 102.50100 * 24 22 11 46 46 H 1.08001 * 126.44421 * 180.24392 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 -0.0032 5 6 4.7570 1.5726 -0.0080 6 7 5.0765 1.9553 -1.3899 7 6 6.3852 2.6440 -1.4607 8 6 5.6986 3.6212 -2.4232 9 6 4.3750 3.2022 -1.7708 10 6 6.0671 5.0823 -2.1853 11 7 5.4294 5.9200 -3.2007 12 6 5.3400 7.3636 -2.9677 13 6 6.5839 8.0498 -3.5358 14 6 6.4923 9.5347 -3.2954 15 1 5.6326 9.9477 -2.7886 16 6 7.5059 10.3661 -3.7226 17 7 8.5530 9.8631 -4.3394 18 14 7.3927 12.2066 -3.4241 19 1 6.1248 12.5161 -2.7155 20 1 8.5436 12.6453 -2.5947 21 1 7.4191 12.9216 -4.7254 22 6 4.9198 5.4190 -4.3309 23 8 4.4611 6.1892 -5.1477 24 6 4.8873 3.9494 -4.6386 25 8 5.8064 3.2481 -3.7962 26 6 3.5697 -0.6757 0.0045 27 8 2.2872 -1.0890 0.0065 28 1 -0.3634 -1.0276 0.0057 29 1 -0.3634 0.5188 0.8871 30 1 -0.3633 0.5089 -0.8928 31 1 5.6068 1.0486 0.4295 32 1 4.5417 2.4673 0.5762 33 1 7.1708 2.0483 -1.9255 34 1 6.6943 3.0984 -0.5194 35 1 4.0880 3.8222 -0.9214 36 1 3.5631 3.0503 -2.4820 37 1 7.1492 5.1984 -2.2462 38 1 5.7245 5.3865 -1.1963 39 1 4.4510 7.7569 -3.4607 40 1 5.2764 7.5555 -1.8966 41 1 7.4729 7.6565 -3.0427 42 1 6.6475 7.8580 -4.6069 43 1 9.2659 10.4480 -4.6402 44 1 5.1616 3.7927 -5.6817 45 1 3.8799 3.5695 -4.4691 46 1 4.4469 -1.3059 0.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272726735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:25 Heat of formation + Delta-G solvation = -35.868001 kcal Electronic energy + Delta-G solvation = -28986.797778 eV Core-core repulsion = 24878.788691 eV Total energy + Delta-G solvation = -4108.009087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.24686 -42.39377 -40.54364 -37.90459 -37.03188 -35.89590 -35.13479 -33.60723 -32.22443 -31.31995 -29.38834 -28.68865 -27.49271 -27.25103 -26.36016 -24.58157 -23.38095 -22.50984 -21.87517 -21.29573 -19.68403 -18.77382 -18.58744 -18.07084 -17.78471 -17.51526 -17.20313 -16.91650 -16.55589 -16.23484 -16.05886 -15.80178 -15.46266 -14.94836 -14.86368 -14.73944 -14.53597 -14.31058 -14.22803 -13.88848 -13.83093 -13.65644 -13.31713 -13.27352 -12.95985 -12.88340 -12.71922 -12.59052 -12.39390 -12.17914 -11.96060 -11.91671 -11.68667 -11.51568 -11.45653 -11.19458 -10.61116 -10.46603 -9.93801 -9.66685 -9.63260 -8.24070 -6.36724 0.54637 1.37935 1.39991 1.43466 1.53214 1.62795 1.83176 1.91835 2.36606 2.40624 2.82992 3.09369 3.15222 3.19088 3.30476 3.57974 3.72062 3.99347 4.04354 4.07868 4.21212 4.22652 4.32364 4.38665 4.40446 4.50820 4.55566 4.57869 4.64113 4.65360 4.66843 4.72801 4.76150 4.84038 4.90290 4.95211 5.08662 5.14386 5.28143 5.39156 5.42371 5.54904 5.75012 5.80547 5.91362 6.14617 6.39815 6.78598 6.81777 7.02664 7.32850 8.88438 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020769 B = 0.002253 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.843620 B =12425.825304 C =12501.559595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.178 3.822 3 N -0.513 5.513 4 C -0.026 4.026 5 C 0.101 3.899 6 N -0.475 5.475 7 C 0.040 3.960 8 C 0.063 3.937 9 C -0.001 4.001 10 C 0.095 3.905 11 N -0.598 5.598 12 C 0.129 3.871 13 C 0.026 3.974 14 C -0.542 4.542 15 H 0.066 0.934 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.972 3.028 19 H -0.259 1.259 20 H -0.272 1.272 21 H -0.282 1.282 22 C 0.471 3.529 23 O -0.592 6.592 24 C 0.065 3.935 25 O -0.343 6.343 26 C -0.061 4.061 27 O -0.214 6.214 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.055 0.945 40 H 0.093 0.907 41 H -0.001 1.001 42 H -0.028 1.028 43 H 0.264 0.736 44 H 0.139 0.861 45 H 0.107 0.893 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.758 -25.613 14.186 31.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.029 4.029 3 N -0.244 5.244 4 C -0.145 4.145 5 C -0.028 4.028 6 N -0.198 5.198 7 C -0.088 4.088 8 C 0.022 3.978 9 C -0.130 4.130 10 C -0.028 4.028 11 N -0.329 5.329 12 C 0.007 3.993 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.084 0.916 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.795 3.205 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.208 1.208 22 C 0.259 3.741 23 O -0.474 6.474 24 C -0.014 4.014 25 O -0.261 6.261 26 C -0.131 4.131 27 O -0.101 6.101 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.139 0.861 32 H 0.083 0.917 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.018 0.982 42 H -0.009 1.009 43 H 0.073 0.927 44 H 0.157 0.843 45 H 0.124 0.876 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -11.063 -25.388 13.307 30.725 hybrid contribution 0.533 1.381 0.090 1.484 sum -10.530 -24.007 13.397 29.440 Atomic orbital electron populations 1.20444 0.78967 1.06143 1.05742 1.27095 0.97893 0.78316 0.99580 1.70302 1.02761 1.31545 1.19772 1.21775 0.92748 0.93605 1.06371 1.21008 0.93278 0.97813 0.90668 1.68566 1.03725 1.25928 1.21543 1.24081 0.93924 0.93119 0.97715 1.23146 0.98398 0.92474 0.83760 1.24483 0.96491 0.91565 1.00502 1.22300 0.98979 0.88815 0.92659 1.47725 1.56710 1.08823 1.19643 1.21533 0.98865 0.78065 1.00880 1.19154 0.93122 0.94996 0.93903 1.21565 1.05444 0.92992 1.38001 0.91591 1.26047 0.94834 1.04554 0.94542 1.70134 1.09716 1.37279 1.40201 0.85304 0.78758 0.78420 0.77970 1.18243 1.19781 1.20822 1.21582 0.77813 0.93284 0.81374 1.90725 1.49497 1.60392 1.46749 1.22716 0.96765 0.84318 0.97599 1.88092 1.58768 1.62944 1.16324 1.25366 0.85250 0.96207 1.06312 1.84460 1.17591 1.38071 1.69980 0.87521 0.87522 0.88088 0.86109 0.91744 0.86810 0.86192 0.88934 0.90559 0.90675 0.86970 0.92604 0.88912 0.98228 1.00917 0.92718 0.84337 0.87562 0.73798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 71.24 0.75 0.27 16 2 C 0.18 3.14 8.34 88.34 0.74 3.88 16 3 N -0.51 -11.20 11.29 -291.98 -3.30 -14.50 16 4 C -0.03 -0.48 6.67 41.26 0.27 -0.20 16 5 C 0.10 1.44 5.34 85.55 0.46 1.89 16 6 N -0.47 -8.40 6.14 -925.14 -5.68 -14.09 16 7 C 0.04 0.60 7.36 86.20 0.63 1.23 16 8 C 0.06 1.40 1.16 -10.65 -0.01 1.39 16 9 C 0.00 -0.03 7.07 86.21 0.61 0.58 16 10 C 0.10 2.51 5.89 86.27 0.51 3.02 16 11 N -0.60 -22.04 2.83 -825.52 -2.34 -24.38 16 12 C 0.13 5.62 5.21 86.38 0.45 6.07 16 13 C 0.03 1.46 5.29 29.85 0.16 1.62 16 14 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 15 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 16 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 17 N -0.93 -58.53 13.29 21.45 0.28 -58.25 16 18 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 C 0.47 18.24 7.57 87.66 0.66 18.91 16 23 O -0.59 -28.79 16.33 -3.03 -0.05 -28.84 16 24 C 0.06 1.85 6.66 71.07 0.47 2.32 16 25 O -0.34 -9.30 10.66 -148.98 -1.59 -10.89 16 26 C -0.06 -0.91 12.08 66.93 0.81 -0.10 16 27 O -0.21 -3.76 10.78 -3.75 -0.04 -3.80 16 28 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.12 1.00 8.08 -2.39 -0.02 0.98 16 32 H 0.06 0.93 7.38 -2.38 -0.02 0.91 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.12 1.12 7.88 -2.39 -0.02 1.10 16 35 H 0.09 1.76 7.25 -2.38 -0.02 1.74 16 36 H 0.08 1.83 7.01 -2.39 -0.02 1.81 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.11 2.32 7.76 -2.39 -0.02 2.31 16 39 H 0.06 2.65 7.29 -2.39 -0.02 2.64 16 40 H 0.09 3.48 7.96 -2.39 -0.02 3.47 16 41 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 16 43 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.14 3.66 8.14 -2.39 -0.02 3.64 16 45 H 0.11 2.58 7.15 -2.39 -0.02 2.56 16 46 H 0.25 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -84.83 382.88 -2.50 -87.33 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.99 Total: 10.47 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 7.20 Total: 9.80 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -11.04 Total: -111.22 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -1.68 Total: -43.53 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -84.83 -2.50 -87.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272726735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.461 kcal (2) G-P(sol) polarization free energy of solvation -84.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds