Wall clock time and date at job start Tue Mar 31 2020 18:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34485 * 126.17022 * 2 1 4 4 C 1.30252 * 108.70437 * 180.26879 * 3 2 1 5 5 O 1.33965 * 108.75860 * 359.75537 * 4 3 2 6 6 C 1.34332 * 126.16774 * 179.85171 * 2 1 3 7 7 C 1.50702 * 126.44111 * 0.02562 * 6 2 1 8 8 N 1.46896 * 109.46978 * 89.71120 * 7 6 2 9 9 C 1.48073 * 110.99646 * 189.99976 * 8 7 6 10 10 C 1.53382 * 86.02382 * 222.76582 * 9 8 7 11 11 C 1.48056 * 110.99997 * 90.55167 * 8 7 6 12 12 C 1.52555 * 113.83772 * 138.14648 * 10 9 8 13 13 N 1.46273 * 109.56610 * 176.52122 * 12 10 9 14 14 C 1.46506 * 118.71382 * 163.89767 * 13 12 10 15 15 C 1.53002 * 109.47035 * 90.00187 * 14 13 12 16 16 C 1.50696 * 109.47300 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99769 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46691 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47025 * 120.00050 * 20 18 16 23 23 H 1.48500 * 109.46740 * 240.00408 * 20 18 16 24 24 C 1.33712 * 122.57058 * 344.17860 * 13 12 10 25 25 O 1.21279 * 118.38756 * 182.95630 * 24 13 12 26 26 C 1.50152 * 123.25113 * 2.72367 * 24 13 12 27 27 O 1.42688 * 113.79134 * 268.80359 * 10 9 8 28 28 H 1.08999 * 109.47171 * 270.14847 * 1 2 3 29 29 H 1.09000 * 109.46993 * 30.14935 * 1 2 3 30 30 H 1.09001 * 109.46935 * 150.14655 * 1 2 3 31 31 H 1.08000 * 125.62097 * 179.73290 * 4 3 2 32 32 H 1.08997 * 109.46755 * 329.70994 * 7 6 2 33 33 H 1.08998 * 109.46984 * 209.71625 * 7 6 2 34 34 H 1.09002 * 113.78012 * 108.48787 * 9 8 7 35 35 H 1.08997 * 113.88611 * 337.06048 * 9 8 7 36 36 H 1.09003 * 113.78588 * 22.95365 * 11 8 7 37 37 H 1.09005 * 113.78666 * 251.50493 * 11 8 7 38 38 H 1.08990 * 109.45789 * 56.48985 * 12 10 9 39 39 H 1.09006 * 109.43769 * 296.53741 * 12 10 9 40 40 H 1.09004 * 109.47073 * 209.99870 * 14 13 12 41 41 H 1.09000 * 109.47212 * 329.99952 * 14 13 12 42 42 H 1.09004 * 109.46930 * 299.99770 * 15 14 13 43 43 H 1.09004 * 109.47059 * 59.99372 * 15 14 13 44 44 H 0.97000 * 120.00540 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.48247 * 222.46165 * 26 24 13 46 46 H 1.08997 * 109.03826 * 102.86309 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 -0.0058 5 8 3.5733 -0.6446 -0.0042 6 6 2.2997 -1.0845 0.0028 7 6 1.8493 -2.5226 0.0060 8 7 1.6967 -2.9909 -1.3779 9 6 1.0310 -4.3129 -1.4203 10 6 2.0735 -4.6848 -2.4821 11 6 2.9569 -3.5852 -1.8789 12 6 2.6436 -6.0906 -2.3206 13 7 3.5611 -6.3767 -3.4233 14 6 4.4875 -7.5043 -3.2934 15 6 3.8273 -8.7722 -3.8389 16 6 4.7804 -9.9319 -3.7060 17 1 5.7593 -9.7798 -3.2759 18 6 4.4027 -11.1871 -4.1334 19 7 3.2108 -11.3723 -4.6576 20 14 5.5838 -12.6248 -3.9680 21 1 6.8510 -12.1559 -3.3520 22 1 4.9729 -13.6711 -3.1094 23 1 5.8668 -13.1900 -5.3118 24 6 3.5912 -5.6462 -4.5427 25 8 4.3445 -5.9836 -5.4314 26 6 2.7349 -4.4314 -4.7563 27 8 1.6542 -4.4164 -3.8193 28 1 -0.3633 0.0027 1.0276 29 1 -0.3633 0.8886 -0.5162 30 1 -0.3633 -0.8913 -0.5116 31 1 4.4066 1.3434 -0.0114 32 1 0.8937 -2.6028 0.5242 33 1 2.5922 -3.1349 0.5171 34 1 0.0098 -4.2787 -1.8000 35 1 1.1223 -4.8829 -0.4958 36 1 3.6207 -3.9382 -1.0896 37 1 3.4664 -2.9729 -2.6230 38 1 1.8297 -6.8154 -2.3282 39 1 3.1808 -6.1577 -1.3745 40 1 5.3956 -7.2954 -3.8591 41 1 4.7390 -7.6488 -2.2428 42 1 2.9192 -8.9811 -3.2733 43 1 3.5757 -8.6276 -4.8896 44 1 2.9452 -12.2552 -4.9587 45 1 2.3341 -4.4428 -5.7699 46 1 3.3444 -3.5382 -4.6190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272820777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:24 Heat of formation + Delta-G solvation = -4.104235 kcal Electronic energy + Delta-G solvation = -29206.185535 eV Core-core repulsion = 25099.553828 eV Total energy + Delta-G solvation = -4106.631707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.62590 -41.44770 -39.34305 -36.84586 -35.50203 -35.43445 -33.25299 -32.95024 -30.65970 -29.98310 -28.44669 -27.45385 -26.62350 -26.26822 -24.57120 -23.67901 -22.37734 -21.64572 -20.96172 -20.22624 -18.52846 -17.55809 -17.44431 -17.12178 -16.79601 -16.22375 -16.08773 -15.86575 -15.62811 -15.11026 -14.94941 -14.53747 -14.43623 -14.29861 -13.56947 -13.53154 -13.41818 -13.20855 -13.04519 -12.92344 -12.76972 -12.48049 -12.29604 -12.23275 -11.84234 -11.60546 -11.35744 -11.29444 -11.09811 -10.95019 -10.81686 -10.68394 -10.30236 -9.94450 -9.87646 -9.43959 -9.29154 -8.99871 -8.93717 -8.38589 -8.16555 -6.03337 -4.06699 1.12427 2.35107 2.44525 2.84036 3.07592 3.28305 3.29304 3.37066 3.40892 3.51414 3.86354 4.05737 4.13649 4.25530 4.43699 4.51973 4.62318 4.67261 4.79052 4.86684 4.95631 5.04787 5.11633 5.27370 5.29398 5.32241 5.32809 5.34321 5.41549 5.44417 5.47046 5.58945 5.69895 5.73108 5.85488 6.00980 6.06665 6.39995 6.44700 6.63074 6.79090 6.84425 7.42041 7.55099 7.67789 7.87757 7.96612 8.31721 8.46665 9.00020 9.57262 11.08141 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.002300 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.265088 B =12169.023387 C =12282.395860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.002 3.998 3 N -0.488 5.488 4 C 0.170 3.830 5 O -0.203 6.203 6 C -0.036 4.036 7 C 0.103 3.897 8 N -0.465 5.465 9 C 0.027 3.973 10 C 0.074 3.926 11 C -0.018 4.018 12 C 0.100 3.900 13 N -0.597 5.597 14 C 0.114 3.886 15 C 0.014 3.986 16 C -0.520 4.520 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.479 3.521 25 O -0.537 6.537 26 C 0.052 3.948 27 O -0.334 6.334 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.248 0.752 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.015 0.985 43 H 0.023 0.977 44 H 0.260 0.740 45 H 0.131 0.869 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 22.482 12.871 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.118 4.118 3 N -0.217 5.217 4 C -0.056 4.056 5 O -0.089 6.089 6 C -0.089 4.089 7 C -0.025 4.025 8 N -0.187 5.187 9 C -0.101 4.101 10 C 0.032 3.968 11 C -0.147 4.147 12 C -0.024 4.024 13 N -0.329 5.329 14 C -0.007 4.007 15 C -0.023 4.023 16 C -0.559 4.559 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.266 3.734 25 O -0.415 6.415 26 C -0.027 4.027 27 O -0.252 6.252 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.033 0.967 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.148 0.852 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.719 23.376 11.965 26.876 hybrid contribution 1.582 -2.016 0.623 2.637 sum -4.137 21.360 12.588 25.136 Atomic orbital electron populations 1.20135 0.86436 1.03830 1.02545 1.21488 0.98012 0.87354 1.04956 1.70362 1.01443 1.31869 1.18055 1.27978 0.97579 0.79281 1.00790 1.84420 1.30247 1.24694 1.69581 1.22851 0.80713 0.97336 1.08050 1.21062 1.01801 0.87218 0.92439 1.68665 1.10959 1.22186 1.16938 1.24001 1.00475 0.88853 0.96766 1.22856 0.95857 0.92935 0.85124 1.24697 0.93375 0.95959 1.00626 1.21965 0.94177 0.95243 0.91021 1.47671 1.37711 1.31337 1.16231 1.21966 0.92357 0.85795 1.00562 1.19352 0.95978 0.89951 0.97068 1.21112 1.00782 0.93043 1.40983 0.92509 1.25007 0.95254 0.98977 0.95101 1.69982 1.19088 1.22721 1.41349 0.86500 0.81110 0.82357 0.77815 1.19698 1.21004 1.20937 1.20667 0.84683 0.85456 0.82609 1.90767 1.40721 1.69694 1.40269 1.22804 0.89054 0.95610 0.95246 1.88108 1.31119 1.91487 1.14467 0.90994 0.90636 0.90139 0.73592 0.87180 0.91484 0.87056 0.88832 0.89548 0.88666 0.89891 0.89760 0.90622 0.91822 0.96664 0.95893 0.92983 0.85157 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.05 36.00 0.36 -0.17 16 2 C 0.00 0.02 7.11 -82.81 -0.59 -0.57 16 3 N -0.49 -5.25 11.29 -11.18 -0.13 -5.38 16 4 C 0.17 1.41 13.23 52.09 0.69 2.10 16 5 O -0.20 -1.99 10.77 5.38 0.06 -1.93 16 6 C -0.04 -0.34 6.94 -35.69 -0.25 -0.59 16 7 C 0.10 0.74 4.95 -4.98 -0.02 0.72 16 8 N -0.46 -4.09 6.15 -242.39 -1.49 -5.58 16 9 C 0.03 0.21 7.35 -2.99 -0.02 0.19 16 10 C 0.07 0.80 1.16 -90.52 -0.10 0.69 16 11 C -0.02 -0.17 7.07 -2.98 -0.02 -0.19 16 12 C 0.10 1.28 5.88 -4.39 -0.03 1.26 16 13 N -0.60 -10.39 2.84 -174.67 -0.50 -10.88 16 14 C 0.11 2.36 5.21 -4.04 -0.02 2.34 16 15 C 0.01 0.38 5.29 -27.88 -0.15 0.23 16 16 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 20 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.48 8.68 7.57 -11.72 -0.09 8.59 16 25 O -0.54 -12.10 16.33 5.56 0.09 -12.01 16 26 C 0.05 0.71 6.65 35.74 0.24 0.94 16 27 O -0.33 -4.40 10.66 -35.23 -0.38 -4.78 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.53 7.80 -51.93 -0.40 0.12 16 31 H 0.25 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.11 0.57 7.75 -51.93 -0.40 0.16 16 33 H 0.07 0.43 7.38 -51.93 -0.38 0.04 16 34 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.50 7.88 -51.93 -0.41 0.09 16 36 H 0.09 0.73 7.25 -51.93 -0.38 0.35 16 37 H 0.10 1.02 7.01 -51.93 -0.36 0.66 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.08 0.88 7.77 -51.93 -0.40 0.48 16 40 H 0.08 1.69 7.28 -51.93 -0.38 1.31 16 41 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 45 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 46 H 0.08 0.97 7.15 -51.93 -0.37 0.60 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -37.17 381.54 -8.12 -45.29 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.83 Total: -2.89 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.41 Total: 2.07 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -1.37 Total: -48.17 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.23 Total: -18.72 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.17 -8.12 -45.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272820777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.186 kcal (2) G-P(sol) polarization free energy of solvation -37.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds