Wall clock time and date at job start Tue Mar 31 2020 18:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34485 * 126.17022 * 2 1 4 4 C 1.30252 * 108.70437 * 180.26879 * 3 2 1 5 5 O 1.33965 * 108.75860 * 359.75537 * 4 3 2 6 6 C 1.34332 * 126.16774 * 179.85171 * 2 1 3 7 7 C 1.50702 * 126.44111 * 0.02562 * 6 2 1 8 8 N 1.46896 * 109.46978 * 89.71120 * 7 6 2 9 9 C 1.48073 * 110.99646 * 189.99976 * 8 7 6 10 10 C 1.53382 * 86.02382 * 222.76582 * 9 8 7 11 11 C 1.48056 * 110.99997 * 90.55167 * 8 7 6 12 12 C 1.52555 * 113.83772 * 138.14648 * 10 9 8 13 13 N 1.46273 * 109.56610 * 176.52122 * 12 10 9 14 14 C 1.46506 * 118.71382 * 163.89767 * 13 12 10 15 15 C 1.53002 * 109.47035 * 90.00187 * 14 13 12 16 16 C 1.50696 * 109.47300 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99769 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46691 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47025 * 120.00050 * 20 18 16 23 23 H 1.48500 * 109.46740 * 240.00408 * 20 18 16 24 24 C 1.33712 * 122.57058 * 344.17860 * 13 12 10 25 25 O 1.21279 * 118.38756 * 182.95630 * 24 13 12 26 26 C 1.50152 * 123.25113 * 2.72367 * 24 13 12 27 27 O 1.42688 * 113.79134 * 268.80359 * 10 9 8 28 28 H 1.08999 * 109.47171 * 270.14847 * 1 2 3 29 29 H 1.09000 * 109.46993 * 30.14935 * 1 2 3 30 30 H 1.09001 * 109.46935 * 150.14655 * 1 2 3 31 31 H 1.08000 * 125.62097 * 179.73290 * 4 3 2 32 32 H 1.08997 * 109.46755 * 329.70994 * 7 6 2 33 33 H 1.08998 * 109.46984 * 209.71625 * 7 6 2 34 34 H 1.09002 * 113.78012 * 108.48787 * 9 8 7 35 35 H 1.08997 * 113.88611 * 337.06048 * 9 8 7 36 36 H 1.09003 * 113.78588 * 22.95365 * 11 8 7 37 37 H 1.09005 * 113.78666 * 251.50493 * 11 8 7 38 38 H 1.08990 * 109.45789 * 56.48985 * 12 10 9 39 39 H 1.09006 * 109.43769 * 296.53741 * 12 10 9 40 40 H 1.09004 * 109.47073 * 209.99870 * 14 13 12 41 41 H 1.09000 * 109.47212 * 329.99952 * 14 13 12 42 42 H 1.09004 * 109.46930 * 299.99770 * 15 14 13 43 43 H 1.09004 * 109.47059 * 59.99372 * 15 14 13 44 44 H 0.97000 * 120.00540 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.48247 * 222.46165 * 26 24 13 46 46 H 1.08997 * 109.03826 * 102.86309 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 -0.0058 5 8 3.5733 -0.6446 -0.0042 6 6 2.2997 -1.0845 0.0028 7 6 1.8493 -2.5226 0.0060 8 7 1.6967 -2.9909 -1.3779 9 6 1.0310 -4.3129 -1.4203 10 6 2.0735 -4.6848 -2.4821 11 6 2.9569 -3.5852 -1.8789 12 6 2.6436 -6.0906 -2.3206 13 7 3.5611 -6.3767 -3.4233 14 6 4.4875 -7.5043 -3.2934 15 6 3.8273 -8.7722 -3.8389 16 6 4.7804 -9.9319 -3.7060 17 1 5.7593 -9.7798 -3.2759 18 6 4.4027 -11.1871 -4.1334 19 7 3.2108 -11.3723 -4.6576 20 14 5.5838 -12.6248 -3.9680 21 1 6.8510 -12.1559 -3.3520 22 1 4.9729 -13.6711 -3.1094 23 1 5.8668 -13.1900 -5.3118 24 6 3.5912 -5.6462 -4.5427 25 8 4.3445 -5.9836 -5.4314 26 6 2.7349 -4.4314 -4.7563 27 8 1.6542 -4.4164 -3.8193 28 1 -0.3633 0.0027 1.0276 29 1 -0.3633 0.8886 -0.5162 30 1 -0.3633 -0.8913 -0.5116 31 1 4.4066 1.3434 -0.0114 32 1 0.8937 -2.6028 0.5242 33 1 2.5922 -3.1349 0.5171 34 1 0.0098 -4.2787 -1.8000 35 1 1.1223 -4.8829 -0.4958 36 1 3.6207 -3.9382 -1.0896 37 1 3.4664 -2.9729 -2.6230 38 1 1.8297 -6.8154 -2.3282 39 1 3.1808 -6.1577 -1.3745 40 1 5.3956 -7.2954 -3.8591 41 1 4.7390 -7.6488 -2.2428 42 1 2.9192 -8.9811 -3.2733 43 1 3.5757 -8.6276 -4.8896 44 1 2.9452 -12.2552 -4.9587 45 1 2.3341 -4.4428 -5.7699 46 1 3.3444 -3.5382 -4.6190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272820777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:23 Heat of formation + Delta-G solvation = -35.303739 kcal Electronic energy + Delta-G solvation = -29207.538447 eV Core-core repulsion = 25099.553828 eV Total energy + Delta-G solvation = -4107.984619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.26215 -42.40259 -40.55193 -37.87634 -37.02366 -36.10158 -35.14159 -33.79657 -32.16012 -31.10849 -29.32739 -28.68002 -27.45410 -26.98628 -26.35381 -24.52879 -23.41179 -22.96826 -21.68254 -21.30533 -19.68537 -18.77586 -18.59327 -18.09382 -17.82046 -17.46623 -17.20442 -16.88123 -16.56656 -16.32825 -16.08266 -15.82720 -15.50145 -15.16165 -14.88633 -14.58196 -14.40539 -14.24169 -14.09441 -14.03186 -13.79464 -13.70639 -13.33141 -13.21397 -12.90320 -12.88278 -12.67694 -12.60419 -12.49653 -12.07395 -11.96081 -11.91345 -11.74953 -11.49423 -11.45518 -11.20827 -10.60998 -10.47622 -9.97500 -9.66724 -9.56818 -8.23960 -6.36524 0.50027 1.38141 1.40138 1.44051 1.53196 1.71094 1.83813 1.88128 2.36526 2.40580 2.80545 3.09696 3.18354 3.27941 3.36606 3.57045 3.67999 3.95653 3.97510 4.07878 4.11901 4.22171 4.24389 4.34380 4.37674 4.46549 4.55313 4.56785 4.65734 4.70391 4.75305 4.77080 4.79950 4.86788 4.91388 5.01112 5.14515 5.17510 5.26751 5.42963 5.48804 5.55611 5.74031 5.79973 5.85838 6.14959 6.40742 6.78504 6.79161 7.03791 7.33209 8.88510 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.002300 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.265088 B =12169.023387 C =12282.395860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.019 4.019 3 N -0.525 5.525 4 C 0.176 3.824 5 O -0.216 6.216 6 C -0.048 4.048 7 C 0.105 3.895 8 N -0.477 5.477 9 C 0.041 3.959 10 C 0.064 3.936 11 C -0.012 4.012 12 C 0.094 3.906 13 N -0.598 5.598 14 C 0.129 3.871 15 C 0.026 3.974 16 C -0.541 4.541 17 H 0.066 0.934 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.283 1.283 24 C 0.471 3.529 25 O -0.593 6.593 26 C 0.065 3.935 27 O -0.344 6.344 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.286 0.714 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.000 1.000 43 H -0.029 1.029 44 H 0.264 0.736 45 H 0.137 0.863 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.062 22.891 15.283 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.138 4.138 3 N -0.255 5.255 4 C -0.050 4.050 5 O -0.102 6.102 6 C -0.101 4.101 7 C -0.023 4.023 8 N -0.200 5.200 9 C -0.087 4.087 10 C 0.023 3.977 11 C -0.141 4.141 12 C -0.028 4.028 13 N -0.329 5.329 14 C 0.007 3.993 15 C -0.012 4.012 16 C -0.580 4.580 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.794 3.206 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.209 1.209 24 C 0.259 3.741 25 O -0.474 6.474 26 C -0.014 4.014 27 O -0.262 6.262 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.301 0.699 32 H 0.151 0.849 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.134 0.866 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.018 0.982 43 H -0.010 1.010 44 H 0.073 0.927 45 H 0.155 0.845 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.460 23.813 14.422 28.370 hybrid contribution 1.458 -2.085 -0.113 2.547 sum -4.002 21.728 14.309 26.322 Atomic orbital electron populations 1.20180 0.85197 1.03847 1.03433 1.21931 0.99129 0.87534 1.05230 1.70366 1.02654 1.32797 1.19693 1.28904 0.98160 0.79232 0.98717 1.84427 1.30639 1.25349 1.69816 1.23248 0.80493 0.98250 1.08090 1.21208 1.03353 0.86037 0.91706 1.68625 1.10409 1.22692 1.18242 1.24109 0.99578 0.88355 0.96662 1.23110 0.98010 0.91895 0.84714 1.24664 0.93766 0.94995 1.00681 1.22319 0.93389 0.96497 0.90616 1.47724 1.37705 1.29953 1.17497 1.21531 0.91705 0.84660 1.01430 1.19157 0.95604 0.92569 0.93892 1.21568 1.01454 0.93963 1.40979 0.91563 1.26030 0.97085 1.02323 0.94496 1.70124 1.21240 1.23675 1.42315 0.85321 0.79032 0.78352 0.77858 1.18208 1.19808 1.20916 1.21580 0.84326 0.86373 0.81805 1.90732 1.43170 1.71416 1.42122 1.22712 0.88871 0.93860 0.95963 1.88106 1.31034 1.91381 1.15631 0.89630 0.91381 0.89300 0.69870 0.84942 0.90134 0.86759 0.85636 0.88004 0.90030 0.90717 0.86605 0.92644 0.88744 0.98172 1.01016 0.92727 0.84495 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.05 71.23 0.72 -0.21 16 2 C -0.02 -0.35 7.11 41.26 0.29 -0.05 16 3 N -0.53 -10.78 11.29 -304.08 -3.43 -14.22 16 4 C 0.18 2.64 13.23 130.48 1.73 4.37 16 5 O -0.22 -3.84 10.77 -3.67 -0.04 -3.88 16 6 C -0.05 -0.81 6.94 24.79 0.17 -0.64 16 7 C 0.10 1.17 4.95 85.56 0.42 1.60 16 8 N -0.48 -6.99 6.15 -925.05 -5.68 -12.67 16 9 C 0.04 0.50 7.35 86.20 0.63 1.13 16 10 C 0.06 1.24 1.16 -10.65 -0.01 1.23 16 11 C -0.01 -0.20 7.07 86.21 0.61 0.40 16 12 C 0.09 2.24 5.88 86.27 0.51 2.75 16 13 N -0.60 -20.80 2.84 -825.53 -2.34 -23.14 16 14 C 0.13 5.40 5.21 86.38 0.45 5.85 16 15 C 0.03 1.40 5.29 29.85 0.16 1.56 16 16 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 17 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 18 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 19 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 20 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 C 0.47 17.40 7.57 87.65 0.66 18.06 16 25 O -0.59 -28.01 16.33 -3.03 -0.05 -28.06 16 26 C 0.06 1.74 6.65 71.06 0.47 2.21 16 27 O -0.34 -8.62 10.66 -148.98 -1.59 -10.21 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.99 7.80 -2.39 -0.02 0.97 16 31 H 0.29 1.26 8.06 -2.91 -0.02 1.24 16 32 H 0.13 0.85 7.75 -2.39 -0.02 0.84 16 33 H 0.08 0.70 7.38 -2.39 -0.02 0.69 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.13 0.74 7.88 -2.39 -0.02 0.72 16 36 H 0.10 1.37 7.25 -2.39 -0.02 1.35 16 37 H 0.08 1.60 7.01 -2.38 -0.02 1.58 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.12 2.02 7.77 -2.38 -0.02 2.00 16 40 H 0.06 2.55 7.28 -2.38 -0.02 2.53 16 41 H 0.09 3.36 7.96 -2.39 -0.02 3.34 16 42 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 43 H -0.03 -1.83 8.14 -2.39 -0.02 -1.85 16 44 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.14 3.45 8.14 -2.39 -0.02 3.43 16 46 H 0.11 2.38 7.15 -2.39 -0.02 2.37 16 Total: -1.00 -84.70 381.54 -2.33 -87.02 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.99 Total: 8.43 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 7.51 Total: 7.80 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -11.17 Total: -107.63 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -1.68 Total: -42.15 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -84.70 -2.33 -87.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272820777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.718 kcal (2) G-P(sol) polarization free energy of solvation -84.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds