Wall clock time and date at job start Tue Mar 31 2020 18:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34329 * 126.16716 * 2 1 4 4 O 1.34754 * 107.11443 * 180.02562 * 3 2 1 5 5 C 1.33970 * 107.75434 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.61494 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.46478 * 270.01852 * 6 5 4 8 8 C 1.48066 * 110.99794 * 190.00221 * 7 6 5 9 9 C 1.53388 * 86.02883 * 222.76840 * 8 7 6 10 10 C 1.48064 * 110.99861 * 90.55606 * 7 6 5 11 11 C 1.52558 * 113.84204 * 138.14067 * 9 8 7 12 12 N 1.46267 * 109.56569 * 176.52252 * 11 9 8 13 13 C 1.46506 * 118.71236 * 163.90057 * 12 11 9 14 14 C 1.53000 * 109.46992 * 90.00143 * 13 12 11 15 15 C 1.50696 * 109.47110 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00016 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99838 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00069 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00113 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47254 * 59.99074 * 19 17 15 21 21 H 1.48495 * 109.47558 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46814 * 299.99935 * 19 17 15 23 23 C 1.33713 * 122.57214 * 344.18486 * 12 11 9 24 24 O 1.21286 * 118.38533 * 182.95647 * 23 12 11 25 25 C 1.50145 * 123.25143 * 2.72120 * 23 12 11 26 26 O 1.42681 * 113.79317 * 268.80527 * 9 8 7 27 27 N 1.30249 * 108.76022 * 0.25931 * 5 4 3 28 28 H 1.09000 * 109.47314 * 90.02898 * 1 2 3 29 29 H 1.09006 * 109.46902 * 210.02257 * 1 2 3 30 30 H 1.08993 * 109.47388 * 330.02458 * 1 2 3 31 31 H 1.07996 * 126.43998 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46614 * 150.02512 * 6 5 4 33 33 H 1.08998 * 109.47359 * 30.02074 * 6 5 4 34 34 H 1.08999 * 113.78278 * 108.49091 * 8 7 6 35 35 H 1.09004 * 113.78202 * 337.04472 * 8 7 6 36 36 H 1.08998 * 113.78441 * 22.95113 * 10 7 6 37 37 H 1.09001 * 113.78398 * 251.50398 * 10 7 6 38 38 H 1.09003 * 109.45054 * 56.49046 * 11 9 8 39 39 H 1.09000 * 109.44067 * 296.54336 * 11 9 8 40 40 H 1.09000 * 109.46803 * 209.99577 * 13 12 11 41 41 H 1.09000 * 109.47214 * 330.00370 * 13 12 11 42 42 H 1.09000 * 109.47214 * 300.00285 * 14 13 12 43 43 H 1.09008 * 109.47142 * 59.99450 * 14 13 12 44 44 H 0.97000 * 119.99667 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.48336 * 222.46321 * 25 23 12 46 46 H 1.08998 * 109.04635 * 102.86453 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0844 0.0000 4 8 3.5734 0.6445 -0.0006 5 6 3.5431 -0.6948 -0.0015 6 6 4.7480 -1.5999 -0.0018 7 7 5.1400 -1.8926 -1.3869 8 6 6.1634 -2.9616 -1.4341 9 6 6.8636 -2.0975 -2.4904 10 6 6.1218 -0.9008 -1.8814 11 6 8.3789 -2.0309 -2.3269 12 7 8.9565 -1.2557 -3.4246 13 6 10.3286 -0.7602 -3.2905 14 6 11.3036 -1.8032 -3.8406 15 6 12.7149 -1.2932 -3.7033 16 1 12.8983 -0.3224 -3.2669 17 6 13.7722 -2.0659 -4.1348 18 7 13.5489 -3.2482 -4.6657 19 14 15.5218 -1.4341 -3.9639 20 1 15.8205 -1.1852 -2.5307 21 1 16.4680 -2.4463 -4.4979 22 1 15.6676 -0.1684 -4.7269 23 6 8.2792 -0.9770 -4.5433 24 8 8.8500 -0.3750 -5.4280 25 6 6.8484 -1.3769 -4.7607 26 8 6.4721 -2.3956 -3.8297 27 7 2.3006 -1.0856 -0.0071 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5134 31 1 1.9769 2.1150 0.0004 32 1 4.5036 -2.5302 0.5110 33 1 5.5728 -1.1071 0.5128 34 1 5.7904 -3.9106 -1.8194 35 1 6.7294 -3.0694 -0.5088 36 1 6.6755 -0.3975 -1.0887 37 1 5.7159 -0.2120 -2.6222 38 1 8.7901 -3.0403 -2.3395 39 1 8.6207 -1.5523 -1.3779 40 1 10.4358 0.1685 -3.8510 41 1 10.5477 -0.5772 -2.2386 42 1 11.1963 -2.7319 -3.2803 43 1 11.0844 -1.9862 -4.8926 44 1 14.2928 -3.7920 -4.9689 45 1 6.7263 -1.7530 -5.7764 46 1 6.2099 -0.5049 -4.6193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274370501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:28 Heat of formation + Delta-G solvation = -3.530387 kcal Electronic energy + Delta-G solvation = -28952.000025 eV Core-core repulsion = 24845.393202 eV Total energy + Delta-G solvation = -4106.606823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.61046 -41.44616 -39.33591 -36.82426 -35.48074 -35.43612 -33.17583 -32.85515 -30.78272 -30.02377 -28.41649 -27.47941 -26.71761 -26.50970 -24.55768 -23.81948 -21.88197 -21.62606 -21.19888 -20.21590 -18.51563 -17.55183 -17.43184 -17.14445 -16.79060 -16.21080 -16.04859 -15.87612 -15.51919 -15.08542 -14.96633 -14.54399 -14.44182 -14.29635 -13.65456 -13.54498 -13.47977 -13.15520 -13.12286 -12.93661 -12.74543 -12.50691 -12.32752 -12.25107 -11.84109 -11.61350 -11.34765 -11.24284 -11.05310 -10.90445 -10.80784 -10.71020 -10.28821 -9.92467 -9.86110 -9.43810 -9.30494 -9.04647 -8.98500 -8.36714 -8.15395 -6.01819 -4.05364 1.12282 2.28419 2.44282 2.85145 3.09001 3.29459 3.32413 3.37101 3.39822 3.43430 3.69067 4.07092 4.15775 4.41120 4.44719 4.51438 4.62275 4.64479 4.77340 4.86909 4.95067 5.04808 5.12541 5.19384 5.22040 5.33683 5.34046 5.34179 5.37912 5.43108 5.48436 5.55394 5.66281 5.70381 5.79414 6.01312 6.02137 6.38607 6.45721 6.64395 6.80406 6.85717 7.47056 7.56268 7.68611 7.88950 7.97879 8.32911 8.47722 9.00874 9.58366 11.09497 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.002199 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.468366 B =12732.534256 C =12932.579388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.017 4.017 3 C -0.079 4.079 4 O -0.202 6.202 5 C 0.207 3.793 6 C 0.113 3.887 7 N -0.464 5.464 8 C 0.031 3.969 9 C 0.074 3.926 10 C -0.021 4.021 11 C 0.100 3.900 12 N -0.597 5.597 13 C 0.114 3.886 14 C 0.015 3.985 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.480 3.520 24 O -0.537 6.537 25 C 0.052 3.948 26 O -0.334 6.334 27 N -0.467 5.467 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.213 0.787 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.015 0.985 43 H 0.023 0.977 44 H 0.262 0.738 45 H 0.131 0.869 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.565 4.803 12.892 28.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.137 4.137 3 C -0.150 4.150 4 O -0.088 6.088 5 C -0.001 4.001 6 C -0.016 4.016 7 N -0.187 5.187 8 C -0.098 4.098 9 C 0.032 3.968 10 C -0.150 4.150 11 C -0.024 4.024 12 N -0.330 5.330 13 C -0.007 4.007 14 C -0.023 4.023 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.266 3.734 24 O -0.415 6.415 25 C -0.027 4.027 26 O -0.251 6.251 27 N -0.198 5.198 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.230 0.770 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.033 0.967 43 H 0.041 0.959 44 H 0.071 0.929 45 H 0.149 0.851 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -25.062 4.102 11.977 28.078 hybrid contribution 1.916 1.422 0.613 2.464 sum -23.146 5.524 12.590 26.921 Atomic orbital electron populations 1.20103 0.86506 1.03285 1.02996 1.21860 0.98237 0.88271 1.05352 1.24760 0.80192 1.00989 1.09055 1.84443 1.30673 1.24095 1.69576 1.25908 0.95114 0.79044 0.99999 1.21051 0.90543 0.96886 0.93094 1.68621 1.28621 1.04911 1.16550 1.24003 0.91270 0.97615 0.96863 1.22849 0.92614 0.96177 0.85120 1.24767 0.93281 0.96172 1.00780 1.21968 0.91065 0.98225 0.91143 1.47673 1.15975 1.52843 1.16480 1.21966 0.78258 0.99907 1.00548 1.19343 0.92574 0.93323 0.97056 1.21037 0.90983 1.03138 1.40935 0.92611 1.25004 0.99296 0.94910 0.95090 1.69965 1.31665 1.10485 1.40978 0.86613 0.84142 0.78608 0.78357 1.20239 1.21261 1.20166 1.20666 0.89436 0.80727 0.82575 1.90768 1.68486 1.41729 1.40482 1.22806 0.91520 0.93018 0.95392 1.88116 1.79239 1.43259 1.14524 1.70341 1.00441 1.31252 1.17761 0.90644 0.90569 0.90778 0.77014 0.86232 0.90412 0.86899 0.88621 0.89329 0.88565 0.89826 0.89670 0.90630 0.91798 0.96661 0.95899 0.92881 0.85147 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.43 36.00 0.38 -0.07 16 2 C -0.02 -0.17 7.11 -82.81 -0.59 -0.76 16 3 C -0.08 -0.67 12.08 29.35 0.35 -0.31 16 4 O -0.20 -2.11 10.78 5.35 0.06 -2.05 16 5 C 0.21 2.20 7.90 -12.95 -0.10 2.10 16 6 C 0.11 0.90 5.42 -4.98 -0.03 0.87 16 7 N -0.46 -4.44 6.15 -242.35 -1.49 -5.93 16 8 C 0.03 0.25 7.36 -2.99 -0.02 0.23 16 9 C 0.07 0.82 1.16 -90.51 -0.10 0.71 16 10 C -0.02 -0.21 7.07 -2.98 -0.02 -0.23 16 11 C 0.10 1.29 5.88 -4.39 -0.03 1.26 16 12 N -0.60 -10.43 2.83 -174.68 -0.50 -10.93 16 13 C 0.11 2.36 5.21 -4.04 -0.02 2.34 16 14 C 0.01 0.39 5.29 -27.89 -0.15 0.24 16 15 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 19 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.48 8.73 7.57 -11.73 -0.09 8.64 16 24 O -0.54 -12.14 16.33 5.55 0.09 -12.05 16 25 C 0.05 0.71 6.65 35.74 0.24 0.95 16 26 O -0.33 -4.50 10.66 -35.23 -0.38 -4.88 16 27 N -0.47 -5.55 11.29 -7.36 -0.08 -5.63 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.21 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.12 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.08 0.46 7.38 -51.93 -0.38 0.08 16 34 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.52 7.88 -51.93 -0.41 0.11 16 36 H 0.09 0.72 7.25 -51.93 -0.38 0.35 16 37 H 0.10 1.04 7.01 -51.93 -0.36 0.67 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.09 0.88 7.77 -51.93 -0.40 0.48 16 40 H 0.08 1.69 7.28 -51.93 -0.38 1.31 16 41 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.13 1.67 8.14 -51.93 -0.42 1.24 16 46 H 0.08 0.98 7.15 -51.93 -0.37 0.61 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -37.31 382.88 -8.27 -45.58 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.86 Total: -2.70 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.59 Total: 2.46 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -1.33 Total: -48.83 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.23 Total: -18.98 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.31 -8.27 -45.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274370501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.045 kcal (2) G-P(sol) polarization free energy of solvation -37.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds