Wall clock time and date at job start Tue Mar 31 2020 18:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34329 * 126.16716 * 2 1 4 4 O 1.34754 * 107.11443 * 180.02562 * 3 2 1 5 5 C 1.33970 * 107.75434 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.61494 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.46478 * 270.01852 * 6 5 4 8 8 C 1.48066 * 110.99794 * 190.00221 * 7 6 5 9 9 C 1.53388 * 86.02883 * 222.76840 * 8 7 6 10 10 C 1.48064 * 110.99861 * 90.55606 * 7 6 5 11 11 C 1.52558 * 113.84204 * 138.14067 * 9 8 7 12 12 N 1.46267 * 109.56569 * 176.52252 * 11 9 8 13 13 C 1.46506 * 118.71236 * 163.90057 * 12 11 9 14 14 C 1.53000 * 109.46992 * 90.00143 * 13 12 11 15 15 C 1.50696 * 109.47110 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00016 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99838 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00069 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00113 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47254 * 59.99074 * 19 17 15 21 21 H 1.48495 * 109.47558 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46814 * 299.99935 * 19 17 15 23 23 C 1.33713 * 122.57214 * 344.18486 * 12 11 9 24 24 O 1.21286 * 118.38533 * 182.95647 * 23 12 11 25 25 C 1.50145 * 123.25143 * 2.72120 * 23 12 11 26 26 O 1.42681 * 113.79317 * 268.80527 * 9 8 7 27 27 N 1.30249 * 108.76022 * 0.25931 * 5 4 3 28 28 H 1.09000 * 109.47314 * 90.02898 * 1 2 3 29 29 H 1.09006 * 109.46902 * 210.02257 * 1 2 3 30 30 H 1.08993 * 109.47388 * 330.02458 * 1 2 3 31 31 H 1.07996 * 126.43998 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46614 * 150.02512 * 6 5 4 33 33 H 1.08998 * 109.47359 * 30.02074 * 6 5 4 34 34 H 1.08999 * 113.78278 * 108.49091 * 8 7 6 35 35 H 1.09004 * 113.78202 * 337.04472 * 8 7 6 36 36 H 1.08998 * 113.78441 * 22.95113 * 10 7 6 37 37 H 1.09001 * 113.78398 * 251.50398 * 10 7 6 38 38 H 1.09003 * 109.45054 * 56.49046 * 11 9 8 39 39 H 1.09000 * 109.44067 * 296.54336 * 11 9 8 40 40 H 1.09000 * 109.46803 * 209.99577 * 13 12 11 41 41 H 1.09000 * 109.47214 * 330.00370 * 13 12 11 42 42 H 1.09000 * 109.47214 * 300.00285 * 14 13 12 43 43 H 1.09008 * 109.47142 * 59.99450 * 14 13 12 44 44 H 0.97000 * 119.99667 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.48336 * 222.46321 * 25 23 12 46 46 H 1.08998 * 109.04635 * 102.86453 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0844 0.0000 4 8 3.5734 0.6445 -0.0006 5 6 3.5431 -0.6948 -0.0015 6 6 4.7480 -1.5999 -0.0018 7 7 5.1400 -1.8926 -1.3869 8 6 6.1634 -2.9616 -1.4341 9 6 6.8636 -2.0975 -2.4904 10 6 6.1218 -0.9008 -1.8814 11 6 8.3789 -2.0309 -2.3269 12 7 8.9565 -1.2557 -3.4246 13 6 10.3286 -0.7602 -3.2905 14 6 11.3036 -1.8032 -3.8406 15 6 12.7149 -1.2932 -3.7033 16 1 12.8983 -0.3224 -3.2669 17 6 13.7722 -2.0659 -4.1348 18 7 13.5489 -3.2482 -4.6657 19 14 15.5218 -1.4341 -3.9639 20 1 15.8205 -1.1852 -2.5307 21 1 16.4680 -2.4463 -4.4979 22 1 15.6676 -0.1684 -4.7269 23 6 8.2792 -0.9770 -4.5433 24 8 8.8500 -0.3750 -5.4280 25 6 6.8484 -1.3769 -4.7607 26 8 6.4721 -2.3956 -3.8297 27 7 2.3006 -1.0856 -0.0071 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5134 31 1 1.9769 2.1150 0.0004 32 1 4.5036 -2.5302 0.5110 33 1 5.5728 -1.1071 0.5128 34 1 5.7904 -3.9106 -1.8194 35 1 6.7294 -3.0694 -0.5088 36 1 6.6755 -0.3975 -1.0887 37 1 5.7159 -0.2120 -2.6222 38 1 8.7901 -3.0403 -2.3395 39 1 8.6207 -1.5523 -1.3779 40 1 10.4358 0.1685 -3.8510 41 1 10.5477 -0.5772 -2.2386 42 1 11.1963 -2.7319 -3.2803 43 1 11.0844 -1.9862 -4.8926 44 1 14.2928 -3.7920 -4.9689 45 1 6.7263 -1.7530 -5.7764 46 1 6.2099 -0.5049 -4.6193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274370501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:27 Heat of formation + Delta-G solvation = -34.981390 kcal Electronic energy + Delta-G solvation = -28953.363843 eV Core-core repulsion = 24845.393202 eV Total energy + Delta-G solvation = -4107.970641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.28279 -42.41719 -40.56329 -37.88240 -37.01657 -36.11914 -35.13098 -33.64975 -32.16700 -31.26179 -29.32566 -28.65693 -27.59627 -27.21231 -26.34900 -24.72356 -23.39057 -22.50991 -21.92188 -21.34919 -19.68102 -18.76842 -18.59054 -18.11940 -17.87962 -17.47962 -17.20096 -16.88954 -16.55650 -16.26804 -16.11778 -15.78537 -15.53773 -15.17056 -14.88776 -14.58181 -14.41370 -14.23810 -14.13501 -14.03115 -13.86614 -13.71135 -13.33610 -13.20883 -12.96254 -12.82589 -12.69988 -12.63216 -12.52784 -12.10348 -11.91158 -11.90785 -11.70576 -11.52722 -11.48910 -11.21899 -10.58622 -10.46946 -10.00122 -9.67597 -9.66282 -8.22618 -6.35377 0.46743 1.38942 1.43403 1.44317 1.51202 1.61379 1.83226 1.84417 2.36328 2.41213 2.74378 3.06302 3.10752 3.17703 3.27276 3.56582 3.84245 3.96810 3.98911 4.06821 4.08630 4.21558 4.25863 4.34982 4.36555 4.43513 4.53751 4.57464 4.65087 4.68496 4.71951 4.77357 4.78294 4.86490 4.92358 4.97083 5.08125 5.15016 5.18623 5.43118 5.43744 5.56597 5.72047 5.79635 5.84408 6.15857 6.41157 6.79383 6.79894 7.04232 7.34164 8.89278 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.002199 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.468366 B =12732.534256 C =12932.579388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.044 4.044 3 C -0.077 4.077 4 O -0.214 6.214 5 C 0.194 3.806 6 C 0.114 3.886 7 N -0.482 5.482 8 C 0.043 3.957 9 C 0.064 3.936 10 C -0.014 4.014 11 C 0.095 3.905 12 N -0.598 5.598 13 C 0.129 3.871 14 C 0.026 3.974 15 C -0.543 4.543 16 H 0.067 0.933 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.970 3.030 20 H -0.258 1.258 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.471 3.529 24 O -0.592 6.592 25 C 0.064 3.936 26 O -0.346 6.346 27 N -0.502 5.502 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.249 0.751 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.000 1.000 43 H -0.029 1.029 44 H 0.264 0.736 45 H 0.137 0.863 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.028 5.865 15.352 29.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.163 4.163 3 C -0.146 4.146 4 O -0.100 6.100 5 C -0.014 4.014 6 C -0.014 4.014 7 N -0.206 5.206 8 C -0.085 4.085 9 C 0.023 3.977 10 C -0.142 4.142 11 C -0.028 4.028 12 N -0.329 5.329 13 C 0.007 3.993 14 C -0.012 4.012 15 C -0.582 4.582 16 H 0.085 0.915 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.794 3.206 20 H -0.182 1.182 21 H -0.210 1.210 22 H -0.196 1.196 23 C 0.260 3.740 24 O -0.474 6.474 25 C -0.015 4.015 26 O -0.264 6.264 27 N -0.233 5.233 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.265 0.735 32 H 0.150 0.850 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.018 0.982 43 H -0.011 1.011 44 H 0.072 0.928 45 H 0.155 0.845 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -25.566 5.148 14.483 29.831 hybrid contribution 1.987 1.060 -0.140 2.257 sum -23.579 6.208 14.343 28.288 Atomic orbital electron populations 1.20188 0.84699 1.04263 1.03451 1.22426 0.99670 0.88230 1.05960 1.25496 0.79362 1.02331 1.07460 1.84443 1.31651 1.24188 1.69710 1.26430 0.95590 0.79424 0.99932 1.21221 0.90451 0.97351 0.92423 1.68568 1.29020 1.05113 1.17922 1.24109 0.90576 0.96727 0.97042 1.23087 0.91410 0.98606 0.84576 1.24749 0.93045 0.95503 1.00941 1.22322 0.92190 0.97378 0.90886 1.47726 1.14687 1.52766 1.17705 1.21537 0.79161 0.97111 1.01499 1.19154 0.93862 0.94338 0.93873 1.21517 0.92109 1.03645 1.40910 0.91490 1.26037 1.04400 0.95015 0.94494 1.70117 1.33183 1.11978 1.41988 0.85423 0.77976 0.77893 0.79273 1.18238 1.20957 1.19649 1.21551 0.91057 0.79629 0.81798 1.90733 1.70059 1.44307 1.42326 1.22717 0.88544 0.94147 0.96044 1.88111 1.79041 1.43417 1.15792 1.70328 1.01475 1.32691 1.18806 0.90369 0.91211 0.88205 0.73501 0.85005 0.87930 0.87158 0.85096 0.87215 0.89859 0.90690 0.86206 0.92620 0.88586 0.98195 1.01063 0.92761 0.84545 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.43 71.24 0.74 -0.02 16 2 C -0.04 -0.79 7.11 41.26 0.29 -0.49 16 3 C -0.08 -1.14 12.08 66.93 0.81 -0.33 16 4 O -0.21 -4.08 10.78 -3.78 -0.04 -4.12 16 5 C 0.19 3.81 7.90 88.34 0.70 4.51 16 6 C 0.11 1.51 5.42 85.56 0.46 1.97 16 7 N -0.48 -8.03 6.15 -924.91 -5.68 -13.72 16 8 C 0.04 0.59 7.36 86.20 0.63 1.22 16 9 C 0.06 1.29 1.16 -10.65 -0.01 1.28 16 10 C -0.01 -0.23 7.07 86.21 0.61 0.38 16 11 C 0.09 2.26 5.88 86.28 0.51 2.77 16 12 N -0.60 -20.82 2.83 -825.54 -2.34 -23.16 16 13 C 0.13 5.39 5.21 86.38 0.45 5.84 16 14 C 0.03 1.40 5.29 29.85 0.16 1.56 16 15 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 16 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 17 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 18 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 19 Si 0.97 44.52 29.54 68.60 2.03 46.54 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 C 0.47 17.51 7.57 87.65 0.66 18.17 16 24 O -0.59 -28.08 16.33 -3.05 -0.05 -28.13 16 25 C 0.06 1.76 6.65 71.06 0.47 2.23 16 26 O -0.35 -9.01 10.66 -148.98 -1.59 -10.59 16 27 N -0.50 -11.47 11.29 -291.98 -3.30 -14.76 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.25 1.41 8.06 -2.91 -0.02 1.38 16 32 H 0.13 1.37 8.08 -2.39 -0.02 1.35 16 33 H 0.10 0.82 7.38 -2.39 -0.02 0.80 16 34 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.13 0.85 7.88 -2.38 -0.02 0.83 16 36 H 0.11 1.37 7.25 -2.39 -0.02 1.35 16 37 H 0.08 1.64 7.01 -2.39 -0.02 1.63 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.12 2.03 7.77 -2.39 -0.02 2.01 16 40 H 0.06 2.55 7.28 -2.39 -0.02 2.53 16 41 H 0.10 3.38 7.96 -2.39 -0.02 3.36 16 42 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H -0.03 -1.86 8.14 -2.38 -0.02 -1.88 16 44 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 45 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 46 H 0.11 2.43 7.15 -2.39 -0.02 2.42 16 Total: -1.00 -85.40 382.88 -2.52 -87.91 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.99 Total: 9.23 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 7.19 Total: 8.48 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -11.04 Total: -109.33 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -1.68 Total: -42.84 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -85.40 -2.52 -87.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274370501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.933 kcal (2) G-P(sol) polarization free energy of solvation -85.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds