Wall clock time and date at job start Tue Mar 31 2020 18:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34330 * 126.16541 * 2 1 4 4 O 1.34752 * 107.11450 * 179.97438 * 3 2 1 5 5 C 1.33968 * 107.75343 * 359.97438 * 4 3 2 6 6 C 1.50706 * 125.62009 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47427 * 270.02922 * 6 5 4 8 8 C 1.47574 * 111.00284 * 266.09334 * 7 6 5 9 9 C 1.52961 * 87.80937 * 221.69632 * 8 7 6 10 10 C 1.47576 * 111.00045 * 169.99736 * 7 6 5 11 11 C 1.52669 * 114.01959 * 139.33377 * 9 8 7 12 12 O 1.43403 * 108.25665 * 177.93268 * 11 9 8 13 13 C 1.42809 * 113.36067 * 294.58081 * 12 11 9 14 14 C 1.50281 * 110.53475 * 51.36565 * 13 12 11 15 15 O 1.21277 * 118.99341 * 161.45689 * 14 13 12 16 16 N 1.34312 * 122.01221 * 341.43780 * 14 13 12 17 17 C 1.46505 * 119.40787 * 182.03958 * 16 14 13 18 18 C 1.52994 * 109.47228 * 269.98078 * 17 16 14 19 19 C 1.50706 * 109.46857 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00114 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99725 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00074 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99785 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46750 * 60.00216 * 23 21 19 25 25 H 1.48498 * 109.46777 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.46999 * 300.00444 * 23 21 19 27 27 N 1.30254 * 108.76242 * 0.26679 * 5 4 3 28 28 H 1.09006 * 109.46908 * 90.02904 * 1 2 3 29 29 H 1.08998 * 109.47047 * 210.02502 * 1 2 3 30 30 H 1.08999 * 109.47446 * 330.03126 * 1 2 3 31 31 H 1.07997 * 126.44578 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47143 * 150.02775 * 6 5 4 33 33 H 1.09007 * 109.46750 * 30.03102 * 6 5 4 34 34 H 1.08999 * 113.49469 * 336.43045 * 8 7 6 35 35 H 1.08998 * 113.50160 * 106.95865 * 8 7 6 36 36 H 1.09004 * 113.49607 * 253.03622 * 10 7 6 37 37 H 1.08995 * 113.49540 * 23.56823 * 10 7 6 38 38 H 1.08997 * 109.70625 * 297.62121 * 11 9 8 39 39 H 1.09004 * 109.70583 * 58.24237 * 11 9 8 40 40 H 1.09003 * 109.26369 * 291.09835 * 13 12 11 41 41 H 1.09000 * 109.26218 * 171.63842 * 13 12 11 42 42 H 1.09002 * 109.46579 * 29.98427 * 17 16 14 43 43 H 1.08999 * 109.46940 * 149.97648 * 17 16 14 44 44 H 1.08998 * 109.47166 * 299.99827 * 18 17 16 45 45 H 1.08999 * 109.47512 * 59.99920 * 18 17 16 46 46 H 0.97000 * 119.99839 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0845 0.0000 4 8 3.5734 0.6446 0.0006 5 6 3.5431 -0.6947 0.0015 6 6 4.7480 -1.5999 0.0018 7 7 5.1396 -1.8945 -1.3830 8 6 4.5258 -3.1526 -1.8501 9 6 5.8645 -3.4933 -2.5070 10 6 6.4470 -2.5774 -1.4290 11 6 6.2723 -4.9575 -2.3635 12 8 7.5110 -5.1491 -3.0602 13 6 7.4015 -4.9629 -4.4718 14 6 6.7392 -3.6497 -4.7805 15 8 6.8653 -3.1739 -5.8889 16 7 6.0116 -2.9870 -3.8665 17 6 5.3537 -1.7330 -4.2422 18 6 6.2985 -0.5604 -3.9717 19 6 5.6219 0.7294 -4.3588 20 1 4.6183 0.7142 -4.7575 21 6 6.2838 1.9288 -4.2031 22 7 7.5058 1.9473 -3.7171 23 14 5.4454 3.5275 -4.6836 24 1 4.2052 3.6957 -3.8843 25 1 6.3624 4.6656 -4.4209 26 1 5.1024 3.4919 -6.1279 27 7 2.3006 -1.0856 -0.0043 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5133 31 1 1.9769 2.1151 -0.0004 32 1 4.5039 -2.5296 0.5159 33 1 5.5730 -1.1064 0.5157 34 1 4.2540 -3.8302 -1.0407 35 1 3.7167 -3.0023 -2.5648 36 1 7.2566 -1.9425 -1.7891 37 1 6.6978 -3.0985 -0.5051 38 1 6.4021 -5.2012 -1.3091 39 1 5.5038 -5.5973 -2.7974 40 1 6.8087 -5.7731 -4.8965 41 1 8.3974 -4.9763 -4.9146 42 1 5.1008 -1.7589 -5.3022 43 1 4.4440 -1.6098 -3.6546 44 1 6.5514 -0.5346 -2.9118 45 1 7.2082 -0.6837 -4.5593 46 1 7.9715 2.7911 -3.6079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274372539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:35 Heat of formation + Delta-G solvation = 5.387438 kcal Electronic energy + Delta-G solvation = -30646.370041 eV Core-core repulsion = 26540.149924 eV Total energy + Delta-G solvation = -4106.220117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.10078 -41.44483 -39.01794 -37.40805 -34.96977 -34.80553 -33.03728 -32.23123 -30.58060 -29.68164 -28.55817 -27.10469 -26.40562 -26.17551 -24.19278 -23.51934 -21.34005 -21.19685 -20.83956 -20.67300 -18.16170 -17.51525 -16.94698 -16.71914 -16.59251 -16.02727 -15.86405 -15.62178 -15.21592 -14.84905 -14.65323 -14.41625 -14.30379 -13.84604 -13.75555 -13.33866 -13.26207 -12.98124 -12.83033 -12.64092 -12.29349 -12.16723 -12.09209 -11.80460 -11.53215 -11.27835 -11.13629 -10.84215 -10.80164 -10.75407 -10.60082 -10.41813 -10.38989 -9.74074 -9.60941 -9.24231 -8.95873 -8.78883 -8.54683 -8.19354 -8.04996 -5.87650 -3.86975 1.64442 2.72996 2.84255 2.98014 3.14754 3.38821 3.42482 3.45755 3.61081 3.89980 4.14829 4.37938 4.45228 4.56246 4.57454 4.80104 4.92916 4.93810 5.07956 5.13564 5.16741 5.24211 5.30389 5.34841 5.39600 5.49333 5.52620 5.57072 5.59541 5.71190 5.79534 6.00811 6.06000 6.13386 6.29255 6.32598 6.45047 6.64452 6.69911 6.89992 6.95234 7.10295 7.75298 7.84529 7.91996 8.10506 8.17289 8.45688 8.58570 9.17985 9.73935 11.24201 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007868 B = 0.005708 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3557.701304 B = 4904.288514 C = 7562.129162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.025 4.025 3 C -0.072 4.072 4 O -0.184 6.184 5 C 0.215 3.785 6 C 0.114 3.886 7 N -0.439 5.439 8 C -0.003 4.003 9 C 0.110 3.890 10 C -0.003 4.003 11 C 0.067 3.933 12 O -0.367 6.367 13 C 0.049 3.951 14 C 0.481 3.519 15 O -0.532 6.532 16 N -0.569 5.569 17 C 0.120 3.880 18 C 0.021 3.979 19 C -0.506 4.506 20 H 0.049 0.951 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.887 3.113 24 H -0.279 1.279 25 H -0.288 1.288 26 H -0.278 1.278 27 N -0.483 5.483 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.210 0.790 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.010 0.990 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.005 -13.102 11.339 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.144 4.144 3 C -0.143 4.143 4 O -0.068 6.068 5 C 0.008 3.992 6 C -0.016 4.016 7 N -0.162 5.162 8 C -0.133 4.133 9 C 0.021 3.979 10 C -0.133 4.133 11 C -0.011 4.011 12 O -0.285 6.285 13 C -0.031 4.031 14 C 0.268 3.732 15 O -0.409 6.409 16 N -0.301 5.301 17 C 0.000 4.000 18 C -0.016 4.016 19 C -0.545 4.545 20 H 0.067 0.933 21 C -0.140 4.140 22 N -0.535 5.535 23 Si 0.715 3.285 24 H -0.205 1.205 25 H -0.214 1.214 26 H -0.204 1.204 27 N -0.214 5.214 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.226 0.774 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.146 0.854 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.029 0.971 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.876 -12.708 10.536 18.290 hybrid contribution -0.493 1.417 0.161 1.509 sum -8.368 -11.292 10.697 17.662 Atomic orbital electron populations 1.20043 0.86861 1.02829 1.02751 1.21699 0.97895 0.88406 1.06448 1.24744 0.80462 1.00930 1.08180 1.84519 1.30140 1.23800 1.68377 1.25785 0.94559 0.79563 0.99317 1.20994 0.91431 0.95811 0.93323 1.69214 1.04162 1.26491 1.16332 1.24321 0.97503 0.91527 0.99917 1.21673 0.97396 0.94198 0.84652 1.24407 0.95064 0.96239 0.97575 1.22888 0.86984 0.92328 0.98883 1.88140 1.31296 1.90869 1.18211 1.22799 1.03645 0.94131 0.82501 1.20942 0.79717 0.87247 0.85292 1.90762 1.60362 1.67678 1.22097 1.47447 1.49725 1.24740 1.08179 1.21957 0.96992 0.81629 0.99398 1.19345 0.94043 0.90278 0.97970 1.21002 1.00435 0.91341 1.41702 0.93276 1.24900 0.94850 0.98746 0.95530 1.69955 1.11538 1.25982 1.45999 0.86741 0.79251 0.83491 0.78971 1.20500 1.21390 1.20376 1.70265 1.00450 1.31425 1.19299 0.90879 0.90947 0.91029 0.77365 0.89578 0.87766 0.89714 0.88652 0.87293 0.90180 0.86772 0.91525 0.89863 0.85442 0.91780 0.90715 0.94687 0.97143 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.43 36.01 0.38 -0.31 16 2 C -0.02 -0.35 7.11 -82.81 -0.59 -0.94 16 3 C -0.07 -1.05 12.08 29.35 0.35 -0.69 16 4 O -0.18 -3.25 10.78 5.36 0.06 -3.19 16 5 C 0.22 3.46 7.93 -12.94 -0.10 3.35 16 6 C 0.11 1.48 5.44 -4.98 -0.03 1.45 16 7 N -0.44 -6.71 4.26 -246.07 -1.05 -7.75 16 8 C 0.00 -0.04 6.30 -7.31 -0.05 -0.08 16 9 C 0.11 1.47 1.66 -132.98 -0.22 1.25 16 10 C 0.00 -0.05 6.23 -7.30 -0.05 -0.09 16 11 C 0.07 0.67 6.14 36.99 0.23 0.89 16 12 O -0.37 -4.52 10.84 -35.23 -0.38 -4.90 16 13 C 0.05 0.63 6.93 35.80 0.25 0.88 16 14 C 0.48 8.79 7.64 -11.40 -0.09 8.71 16 15 O -0.53 -12.12 16.49 5.56 0.09 -12.03 16 16 N -0.57 -10.26 2.69 -160.35 -0.43 -10.69 16 17 C 0.12 2.66 4.49 -4.04 -0.02 2.64 16 18 C 0.02 0.57 5.02 -27.88 -0.14 0.43 16 19 C -0.51 -14.92 9.11 -34.44 -0.31 -15.24 16 20 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 21 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 23 Si 0.89 22.64 29.54 -169.99 -5.02 17.62 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 27 N -0.48 -7.64 11.29 -7.35 -0.08 -7.72 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.21 2.26 8.06 -52.49 -0.42 1.83 16 32 H 0.09 0.84 7.30 -51.93 -0.38 0.46 16 33 H 0.10 1.26 8.08 -51.93 -0.42 0.84 16 34 H 0.08 0.77 7.37 -51.93 -0.38 0.39 16 35 H 0.10 1.37 7.04 -51.93 -0.37 1.01 16 36 H 0.11 1.93 6.83 -51.93 -0.35 1.57 16 37 H 0.08 0.78 7.66 -51.93 -0.40 0.38 16 38 H 0.11 0.79 7.84 -51.93 -0.41 0.38 16 39 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.06 1.54 7.36 -51.93 -0.38 1.16 16 43 H 0.07 1.61 5.57 -51.93 -0.29 1.32 16 44 H 0.03 0.95 5.34 -51.93 -0.28 0.68 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 373.93 15.07 5.64 5.64 Total: -1.00 -38.01 373.93 -7.50 -45.52 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.58 Total: 0.55 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -0.48 Total: 3.96 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.82 Total: -53.16 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.23 Total: -20.13 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.01 -7.50 -45.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274372539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.904 kcal (2) G-P(sol) polarization free energy of solvation -38.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds