Wall clock time and date at job start Tue Mar 31 2020 19:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33655 * 125.80058 * 2 1 4 4 C 1.34212 * 110.90740 * 179.97438 * 3 2 1 5 5 C 1.34181 * 109.12459 * 359.75495 * 4 3 2 6 6 C 1.36411 * 125.80306 * 180.02562 * 2 1 3 7 7 C 1.47382 * 127.19309 * 359.96295 * 6 2 1 8 8 O 1.21615 * 119.99769 * 0.02562 * 7 6 2 9 9 N 1.34775 * 120.00179 * 179.97438 * 7 6 2 10 10 C 1.46502 * 119.99900 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46833 * 180.02562 * 10 9 7 12 12 H 1.08990 * 112.85041 * 43.80556 * 11 10 9 13 13 C 1.53781 * 113.61094 * 175.00263 * 11 10 9 14 14 C 1.53780 * 87.08223 * 139.97809 * 13 11 10 15 15 H 1.09002 * 113.61506 * 89.19729 * 14 13 11 16 16 N 1.46901 * 113.61519 * 220.01465 * 14 13 11 17 17 C 1.46898 * 110.99614 * 204.99867 * 16 14 13 18 18 C 1.50706 * 109.46984 * 180.02562 * 17 16 14 19 19 O 1.21295 * 119.99863 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00080 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99873 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99509 * 359.71860 * 21 20 18 23 23 C 1.38950 * 120.00048 * 179.72298 * 21 20 18 24 24 N 1.31413 * 119.99930 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99918 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47112 * 89.99702 * 25 23 21 27 27 H 1.48498 * 109.47011 * 209.99970 * 25 23 21 28 28 H 1.48499 * 109.47134 * 329.99591 * 25 23 21 29 29 C 1.53780 * 113.61070 * 272.49598 * 11 10 9 30 30 H 1.08999 * 109.47407 * 269.99156 * 1 2 3 31 31 H 1.09005 * 109.47170 * 29.99500 * 1 2 3 32 32 H 1.08997 * 109.46907 * 149.99577 * 1 2 3 33 33 H 1.08002 * 125.44039 * 180.02562 * 4 3 2 34 34 H 1.07997 * 127.02283 * 180.25719 * 5 4 3 35 35 H 0.96999 * 119.99616 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.46994 * 60.00209 * 10 9 7 37 37 H 1.09000 * 109.47283 * 300.00218 * 10 9 7 38 38 H 1.09002 * 113.61923 * 25.42856 * 13 11 10 39 39 H 1.08997 * 113.61250 * 254.52601 * 13 11 10 40 40 H 1.00890 * 111.00276 * 328.95675 * 16 14 13 41 41 H 1.09004 * 109.47320 * 60.00702 * 17 16 14 42 42 H 1.09001 * 109.47291 * 299.99999 * 17 16 14 43 43 H 0.96996 * 119.99858 * 359.72084 * 20 18 17 44 44 H 0.96999 * 119.99993 * 179.97438 * 24 23 21 45 45 H 1.09002 * 113.61527 * 105.47966 * 29 11 10 46 46 H 1.08999 * 113.61858 * 334.57124 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 0.0006 5 6 3.6849 -0.5991 0.0064 6 6 2.3050 -1.1063 -0.0005 7 6 1.8740 -2.5157 -0.0004 8 8 0.6890 -2.7892 -0.0002 9 7 2.7931 -3.5015 -0.0014 10 6 2.3646 -4.9025 -0.0007 11 6 3.5949 -5.8120 -0.0016 12 1 4.3667 -5.4806 0.6929 13 6 3.2558 -7.3069 0.1218 14 6 4.3666 -7.5635 -0.9102 15 1 5.3503 -7.7127 -0.4650 16 7 4.0250 -8.5959 -1.8980 17 6 5.2362 -9.2161 -2.4513 18 6 4.8470 -10.2671 -3.4589 19 8 3.6757 -10.4788 -3.6926 20 7 5.8002 -10.9723 -4.0995 21 6 5.4460 -11.9280 -5.0165 22 1 4.4031 -12.1188 -5.2221 23 6 6.4288 -12.6512 -5.6812 24 7 7.6979 -12.4187 -5.4312 25 14 5.9462 -13.9538 -6.9301 26 1 5.8415 -13.3347 -8.2758 27 1 6.9779 -15.0216 -6.9553 28 1 4.6356 -14.5407 -6.5518 29 6 4.1254 -6.1292 -1.4097 30 1 -0.3634 -0.0002 1.0276 31 1 -0.3634 0.8901 -0.5138 32 1 -0.3633 -0.8899 -0.5139 33 1 4.4172 1.4285 0.0011 34 1 4.5927 -1.1839 0.0121 35 1 3.7382 -3.2833 -0.0019 36 1 1.7658 -5.0997 -0.8900 37 1 1.7680 -5.0995 0.8900 38 1 2.2585 -7.5596 -0.2382 39 1 3.4697 -7.7233 1.1061 40 1 3.4133 -9.2911 -1.4976 41 1 5.8080 -9.6781 -1.6465 42 1 5.8447 -8.4541 -2.9383 43 1 6.7368 -10.8007 -3.9150 44 1 8.3840 -12.9238 -5.8950 45 1 5.0415 -5.5949 -1.6617 46 1 3.3659 -6.0599 -2.1884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316610791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:37 Heat of formation + Delta-G solvation = -42.748675 kcal Electronic energy + Delta-G solvation = -27060.228077 eV Core-core repulsion = 22951.920621 eV Total energy + Delta-G solvation = -4108.307456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.96861 -39.99355 -39.06360 -38.03084 -35.11639 -34.05863 -33.50010 -33.08935 -32.21014 -31.19491 -28.65876 -27.16210 -26.26613 -25.72188 -24.14600 -23.39266 -21.82540 -21.21008 -20.27897 -19.62314 -19.07255 -18.22769 -17.86312 -16.75122 -16.53104 -16.21033 -15.95349 -15.64887 -15.33597 -15.10576 -14.78229 -14.49575 -14.30616 -13.93196 -13.69722 -13.58293 -13.47007 -13.36842 -13.26425 -13.23861 -12.51686 -12.40588 -12.27484 -12.13464 -11.62789 -11.52425 -11.49841 -11.05183 -10.94602 -10.73561 -10.39099 -10.35143 -10.23904 -10.21185 -10.15505 -9.50303 -9.32216 -8.94799 -8.43289 -8.05754 -7.95031 -6.41200 -3.81983 1.00136 1.63361 2.38984 2.96721 3.08708 3.18512 3.26975 3.32990 3.91945 4.09500 4.11010 4.29389 4.38171 4.43051 4.45173 4.58081 4.74379 4.76459 4.87006 5.03499 5.10003 5.13934 5.20887 5.24472 5.27189 5.29275 5.42993 5.51849 5.63338 5.68421 5.75944 5.78660 5.82179 5.86188 5.93803 5.96539 6.11261 6.21032 6.25753 6.39427 6.60031 7.25565 7.30414 7.55810 7.68609 7.97814 8.07235 8.62069 9.18597 9.55127 10.06729 10.76565 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024420 B = 0.001524 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.342130 B =18362.469624 C =18555.282749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.079 3.921 3 O -0.177 6.177 4 C -0.038 4.038 5 C -0.189 4.189 6 C -0.248 4.248 7 C 0.589 3.411 8 O -0.543 6.543 9 N -0.720 5.720 10 C 0.133 3.867 11 C -0.126 4.126 12 H 0.093 0.907 13 C -0.131 4.131 14 C 0.059 3.941 15 H 0.071 0.929 16 N -0.656 5.656 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.121 4.121 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.208 0.792 34 H 0.157 0.843 35 H 0.400 0.600 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.351 0.649 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.063 0.937 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 25.617 15.607 30.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.026 3.974 3 O -0.073 6.073 4 C -0.104 4.104 5 C -0.208 4.208 6 C -0.253 4.253 7 C 0.377 3.623 8 O -0.422 6.422 9 N -0.371 5.371 10 C 0.009 3.991 11 C -0.145 4.145 12 H 0.112 0.888 13 C -0.170 4.170 14 C -0.051 4.051 15 H 0.089 0.911 16 N -0.289 5.289 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.159 4.159 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.225 0.775 34 H 0.175 0.825 35 H 0.234 0.766 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.171 0.829 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.024 25.860 14.843 30.419 hybrid contribution 1.757 -1.129 0.194 2.098 sum -4.267 24.731 15.036 29.257 Atomic orbital electron populations 1.20636 0.83669 1.05226 1.04463 1.22865 0.94194 0.83094 0.97235 1.83781 1.17204 1.35018 1.71296 1.23875 0.83537 0.96438 1.06561 1.22874 0.96621 0.94603 1.06701 1.21166 0.93357 0.93915 1.16817 1.17186 0.85471 0.83741 0.75933 1.90768 1.16592 1.84087 1.50760 1.45780 1.09666 1.06238 1.75381 1.21411 0.96377 0.78621 1.02649 1.22650 0.97372 0.95125 0.99345 0.88841 1.23193 1.00308 0.94291 0.99170 1.22983 0.97262 0.93066 0.91835 0.91123 1.60226 1.15662 1.17174 1.35808 1.21732 0.92405 0.96904 0.97228 1.19847 0.86636 0.85146 0.85787 1.90525 1.18264 1.69937 1.68003 1.41870 1.08081 1.33379 1.36778 1.19716 0.94860 1.12431 1.15884 0.87919 1.25260 0.94764 0.99062 0.98871 1.69615 0.99368 1.42198 1.43200 0.85852 0.78278 0.79822 0.80308 1.20396 1.20953 1.19431 1.23198 1.01454 0.95621 0.95619 0.89278 0.90334 0.87167 0.77521 0.82538 0.76559 0.90758 0.91360 0.88762 0.91271 0.82902 0.93925 0.89708 0.77484 0.91904 0.91861 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.89 36.00 0.36 -0.24 16 2 C 0.08 0.71 7.37 -34.97 -0.26 0.45 16 3 O -0.18 -1.44 10.52 7.65 0.08 -1.36 16 4 C -0.04 -0.23 12.03 29.30 0.35 0.12 16 5 C -0.19 -1.28 10.60 -37.45 -0.40 -1.68 16 6 C -0.25 -2.36 6.31 -103.28 -0.65 -3.01 16 7 C 0.59 6.53 7.81 -12.54 -0.10 6.43 16 8 O -0.54 -7.58 14.84 5.26 0.08 -7.51 16 9 N -0.72 -6.33 5.55 -61.39 -0.34 -6.67 16 10 C 0.13 1.23 5.51 -4.04 -0.02 1.21 16 11 C -0.13 -1.03 3.76 -89.81 -0.34 -1.37 16 12 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 13 C -0.13 -1.24 7.21 -25.92 -0.19 -1.43 16 14 C 0.06 0.68 4.14 -66.90 -0.28 0.41 16 15 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 16 N -0.66 -10.43 6.18 -107.12 -0.66 -11.09 16 17 C 0.05 0.88 6.01 -4.97 -0.03 0.85 16 18 C 0.44 10.47 7.82 -10.98 -0.09 10.38 16 19 O -0.58 -15.99 15.78 5.54 0.09 -15.90 16 20 N -0.56 -14.40 5.29 -10.96 -0.06 -14.45 16 21 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 25 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 29 C -0.12 -1.25 7.43 -25.92 -0.19 -1.45 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 0.96 6.48 -51.93 -0.34 0.62 16 33 H 0.21 0.41 8.06 -52.49 -0.42 -0.01 16 34 H 0.16 0.66 7.74 -52.49 -0.41 0.25 16 35 H 0.40 2.57 7.64 -40.82 -0.31 2.26 16 36 H 0.07 0.81 7.84 -51.93 -0.41 0.41 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.35 5.76 8.25 -39.30 -0.32 5.44 16 41 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 42 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 1.16 7.90 -51.93 -0.41 0.75 16 LS Contribution 391.54 15.07 5.90 5.90 Total: -1.00 -34.51 391.54 -7.95 -42.45 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -6.66 Total: 13.77 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -2.07 Total: 2.61 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.34 Total: -56.10 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: 0.25 Total: -24.77 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.51 -7.95 -42.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316610791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.295 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds