Wall clock time and date at job start Tue Mar 31 2020 19:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33655 * 125.80058 * 2 1 4 4 C 1.34212 * 110.90740 * 179.97438 * 3 2 1 5 5 C 1.34181 * 109.12459 * 359.75495 * 4 3 2 6 6 C 1.36411 * 125.80306 * 180.02562 * 2 1 3 7 7 C 1.47382 * 127.19309 * 359.96295 * 6 2 1 8 8 O 1.21615 * 119.99769 * 0.02562 * 7 6 2 9 9 N 1.34775 * 120.00179 * 179.97438 * 7 6 2 10 10 C 1.46502 * 119.99900 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46833 * 180.02562 * 10 9 7 12 12 H 1.08990 * 112.85041 * 43.80556 * 11 10 9 13 13 C 1.53781 * 113.61094 * 175.00263 * 11 10 9 14 14 C 1.53780 * 87.08223 * 139.97809 * 13 11 10 15 15 H 1.09002 * 113.61506 * 89.19729 * 14 13 11 16 16 N 1.46901 * 113.61519 * 220.01465 * 14 13 11 17 17 C 1.46898 * 110.99614 * 204.99867 * 16 14 13 18 18 C 1.50706 * 109.46984 * 180.02562 * 17 16 14 19 19 O 1.21295 * 119.99863 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00080 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99873 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99509 * 359.71860 * 21 20 18 23 23 C 1.38950 * 120.00048 * 179.72298 * 21 20 18 24 24 N 1.31413 * 119.99930 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99918 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47112 * 89.99702 * 25 23 21 27 27 H 1.48498 * 109.47011 * 209.99970 * 25 23 21 28 28 H 1.48499 * 109.47134 * 329.99591 * 25 23 21 29 29 C 1.53780 * 113.61070 * 272.49598 * 11 10 9 30 30 H 1.08999 * 109.47407 * 269.99156 * 1 2 3 31 31 H 1.09005 * 109.47170 * 29.99500 * 1 2 3 32 32 H 1.08997 * 109.46907 * 149.99577 * 1 2 3 33 33 H 1.08002 * 125.44039 * 180.02562 * 4 3 2 34 34 H 1.07997 * 127.02283 * 180.25719 * 5 4 3 35 35 H 0.96999 * 119.99616 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.46994 * 60.00209 * 10 9 7 37 37 H 1.09000 * 109.47283 * 300.00218 * 10 9 7 38 38 H 1.09002 * 113.61923 * 25.42856 * 13 11 10 39 39 H 1.08997 * 113.61250 * 254.52601 * 13 11 10 40 40 H 1.00890 * 111.00276 * 328.95675 * 16 14 13 41 41 H 1.09004 * 109.47320 * 60.00702 * 17 16 14 42 42 H 1.09001 * 109.47291 * 299.99999 * 17 16 14 43 43 H 0.96996 * 119.99858 * 359.72084 * 20 18 17 44 44 H 0.96999 * 119.99993 * 179.97438 * 24 23 21 45 45 H 1.09002 * 113.61527 * 105.47966 * 29 11 10 46 46 H 1.08999 * 113.61858 * 334.57124 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 0.0006 5 6 3.6849 -0.5991 0.0064 6 6 2.3050 -1.1063 -0.0005 7 6 1.8740 -2.5157 -0.0004 8 8 0.6890 -2.7892 -0.0002 9 7 2.7931 -3.5015 -0.0014 10 6 2.3646 -4.9025 -0.0007 11 6 3.5949 -5.8120 -0.0016 12 1 4.3667 -5.4806 0.6929 13 6 3.2558 -7.3069 0.1218 14 6 4.3666 -7.5635 -0.9102 15 1 5.3503 -7.7127 -0.4650 16 7 4.0250 -8.5959 -1.8980 17 6 5.2362 -9.2161 -2.4513 18 6 4.8470 -10.2671 -3.4589 19 8 3.6757 -10.4788 -3.6926 20 7 5.8002 -10.9723 -4.0995 21 6 5.4460 -11.9280 -5.0165 22 1 4.4031 -12.1188 -5.2221 23 6 6.4288 -12.6512 -5.6812 24 7 7.6979 -12.4187 -5.4312 25 14 5.9462 -13.9538 -6.9301 26 1 5.8415 -13.3347 -8.2758 27 1 6.9779 -15.0216 -6.9553 28 1 4.6356 -14.5407 -6.5518 29 6 4.1254 -6.1292 -1.4097 30 1 -0.3634 -0.0002 1.0276 31 1 -0.3634 0.8901 -0.5138 32 1 -0.3633 -0.8899 -0.5139 33 1 4.4172 1.4285 0.0011 34 1 4.5927 -1.1839 0.0121 35 1 3.7382 -3.2833 -0.0019 36 1 1.7658 -5.0997 -0.8900 37 1 1.7680 -5.0995 0.8900 38 1 2.2585 -7.5596 -0.2382 39 1 3.4697 -7.7233 1.1061 40 1 3.4133 -9.2911 -1.4976 41 1 5.8080 -9.6781 -1.6465 42 1 5.8447 -8.4541 -2.9383 43 1 6.7368 -10.8007 -3.9150 44 1 8.3840 -12.9238 -5.8950 45 1 5.0415 -5.5949 -1.6617 46 1 3.3659 -6.0599 -2.1884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316610791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:36 Heat of formation + Delta-G solvation = -68.958105 kcal Electronic energy + Delta-G solvation = -27061.364603 eV Core-core repulsion = 22951.920621 eV Total energy + Delta-G solvation = -4109.443982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.52887 -40.85365 -40.22098 -39.62169 -36.24966 -35.81653 -34.55063 -33.92319 -33.24044 -32.75472 -29.59457 -28.18827 -27.37540 -26.60761 -25.77496 -24.16409 -22.61867 -21.90272 -21.21024 -20.96836 -20.21934 -19.85976 -18.82957 -17.84150 -17.34615 -17.15006 -16.88331 -16.82853 -16.43000 -16.36476 -16.09371 -15.75078 -15.50758 -15.23219 -14.99664 -14.59508 -14.38153 -14.09073 -13.97990 -13.82801 -13.75134 -13.53079 -13.47702 -13.29186 -13.01015 -12.77393 -12.67710 -12.44406 -12.40261 -12.12793 -11.80908 -11.62553 -11.51263 -11.15523 -11.02468 -10.84272 -10.32703 -10.10091 -10.02065 -9.51613 -9.28125 -8.47288 -5.96107 0.32424 1.14035 1.37706 1.41497 1.54226 1.84464 2.05005 2.26206 2.29393 2.32101 2.97942 3.20084 3.48214 3.61052 3.62709 3.68985 3.86204 3.91155 3.92545 4.01329 4.26180 4.35939 4.37403 4.45630 4.49830 4.60286 4.60399 4.63485 4.71834 4.77000 4.84826 4.91551 4.93412 4.98129 5.13327 5.20214 5.28957 5.37502 5.40127 5.42239 5.54254 5.94407 6.04473 6.20925 6.44844 6.55174 6.60014 7.12164 7.20909 7.55848 8.11517 8.70046 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024420 B = 0.001524 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.342130 B =18362.469624 C =18555.282749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.064 3.936 3 O -0.184 6.184 4 C -0.033 4.033 5 C -0.196 4.196 6 C -0.272 4.272 7 C 0.582 3.418 8 O -0.582 6.582 9 N -0.707 5.707 10 C 0.136 3.864 11 C -0.102 4.102 12 H 0.123 0.877 13 C -0.128 4.128 14 C 0.053 3.947 15 H 0.090 0.910 16 N -0.674 5.674 17 C 0.066 3.934 18 C 0.435 3.565 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.274 1.274 29 C -0.122 4.122 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.248 0.752 34 H 0.183 0.817 35 H 0.414 0.586 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.344 0.656 41 H 0.068 0.932 42 H 0.101 0.899 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.077 0.923 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 26.852 16.595 31.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.011 3.989 3 O -0.080 6.080 4 C -0.097 4.097 5 C -0.215 4.215 6 C -0.277 4.277 7 C 0.371 3.629 8 O -0.464 6.464 9 N -0.358 5.358 10 C 0.013 3.987 11 C -0.121 4.121 12 H 0.141 0.859 13 C -0.166 4.166 14 C -0.057 4.057 15 H 0.108 0.892 16 N -0.307 5.307 17 C -0.066 4.066 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.160 4.160 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.264 0.736 34 H 0.200 0.800 35 H 0.251 0.749 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.163 0.837 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.848 27.120 15.848 31.646 hybrid contribution 1.103 -1.453 -0.098 1.827 sum -2.745 25.667 15.750 30.239 Atomic orbital electron populations 1.20612 0.83215 1.05103 1.04908 1.23129 0.94916 0.83421 0.97457 1.83794 1.18214 1.34767 1.71263 1.24717 0.83383 0.97070 1.04580 1.23187 0.96130 0.95209 1.06942 1.21276 0.95244 0.93092 1.18039 1.17534 0.85194 0.84799 0.75386 1.90743 1.18226 1.84777 1.52695 1.45667 1.10173 1.05623 1.74370 1.21302 0.96793 0.79197 1.01453 1.22537 0.97134 0.93984 0.98415 0.85908 1.23161 0.98935 0.95159 0.99364 1.23197 0.98826 0.91923 0.91709 0.89223 1.60240 1.15081 1.17510 1.37849 1.21587 0.93406 0.95400 0.96230 1.20980 0.85724 0.85255 0.85724 1.90492 1.20097 1.71250 1.69359 1.41936 1.08619 1.33524 1.36941 1.19674 0.94171 1.14618 1.18104 0.90448 1.26032 0.94615 1.00468 1.00076 1.69668 0.99935 1.42752 1.43657 0.84928 0.77999 0.77479 0.77922 1.19712 1.19386 1.19851 1.23154 1.01455 0.95269 0.96162 0.88545 0.88489 0.89156 0.73620 0.80017 0.74909 0.93052 0.91635 0.90191 0.89424 0.83658 0.91392 0.88077 0.76933 0.91269 0.90414 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.89 71.24 0.70 -0.51 16 2 C 0.06 1.14 7.37 25.26 0.19 1.32 16 3 O -0.18 -2.75 10.52 4.47 0.05 -2.70 16 4 C -0.03 -0.30 12.03 66.89 0.80 0.50 16 5 C -0.20 -2.22 10.60 23.65 0.25 -1.97 16 6 C -0.27 -5.03 6.31 -18.99 -0.12 -5.15 16 7 C 0.58 13.01 7.81 86.65 0.68 13.68 16 8 O -0.58 -17.08 14.84 -4.08 -0.06 -17.14 16 9 N -0.71 -11.76 5.55 -466.40 -2.59 -14.35 16 10 C 0.14 2.45 5.51 86.38 0.48 2.93 16 11 C -0.10 -1.44 3.76 -10.27 -0.04 -1.48 16 12 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 13 C -0.13 -2.20 7.21 31.12 0.22 -1.97 16 14 C 0.05 1.11 4.14 45.44 0.19 1.30 16 15 H 0.09 1.61 7.87 -2.39 -0.02 1.59 16 16 N -0.67 -20.96 6.18 -492.83 -3.05 -24.01 16 17 C 0.07 2.25 6.01 85.56 0.51 2.76 16 18 C 0.44 20.95 7.82 87.66 0.69 21.64 16 19 O -0.63 -35.33 15.78 -3.08 -0.05 -35.37 16 20 N -0.57 -29.64 5.29 -306.97 -1.62 -31.26 16 21 C -0.34 -19.31 9.68 84.04 0.81 -18.50 16 22 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -49.60 13.05 21.66 0.28 -49.31 16 25 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 29 C -0.12 -2.33 7.43 31.12 0.23 -2.10 16 30 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.09 1.72 6.48 -2.39 -0.02 1.70 16 33 H 0.25 0.00 8.06 -2.91 -0.02 -0.03 16 34 H 0.18 0.94 7.74 -2.91 -0.02 0.91 16 35 H 0.41 4.39 7.64 -92.71 -0.71 3.68 16 36 H 0.05 1.18 7.84 -2.39 -0.02 1.16 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.63 8.10 -2.39 -0.02 1.61 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.34 11.34 8.25 -89.70 -0.74 10.60 16 41 H 0.07 1.98 8.13 -2.39 -0.02 1.97 16 42 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 44 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 45 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.07 1.68 7.90 -2.39 -0.02 1.66 16 Total: -1.00 -77.44 391.54 -0.09 -77.53 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -1.14 Total: 39.12 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 6.06 Total: 12.27 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -6.98 Total: -118.93 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -0.06 Total: -55.21 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -77.44 -0.09 -77.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316610791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.575 kcal (2) G-P(sol) polarization free energy of solvation -77.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds