Wall clock time and date at job start Tue Mar 31 2020 19:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29028 * 124.91503 * 2 1 4 4 C 1.31779 * 117.12182 * 179.75131 * 3 2 1 5 5 C 1.50704 * 122.74669 * 180.33703 * 4 3 2 6 6 C 1.33637 * 114.50275 * 0.52080 * 4 3 2 7 7 C 1.50701 * 126.03806 * 179.78556 * 6 4 3 8 8 N 1.46495 * 109.47060 * 110.06582 * 7 6 4 9 9 C 1.36742 * 127.13399 * 264.40466 * 8 7 6 10 10 C 1.50695 * 126.34936 * 0.26642 * 9 8 7 11 11 N 1.30292 * 107.30373 * 179.97438 * 9 8 7 12 12 N 1.28533 * 110.05796 * 0.02562 * 11 9 8 13 13 C 1.31222 * 109.85255 * 359.97438 * 12 11 9 14 14 N 1.38584 * 126.46655 * 180.02562 * 13 12 11 15 15 C 1.46899 * 111.00132 * 254.58227 * 14 13 12 16 16 C 1.46901 * 111.00298 * 18.54067 * 14 13 12 17 17 H 1.08991 * 109.47442 * 54.99302 * 16 14 13 18 18 C 1.53008 * 109.46681 * 294.99516 * 16 14 13 19 19 C 1.50695 * 109.47115 * 175.00071 * 16 14 13 20 20 H 1.07993 * 120.00700 * 359.97438 * 19 16 14 21 21 C 1.37888 * 119.99770 * 179.97438 * 19 16 14 22 22 N 1.31513 * 120.00075 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 119.99670 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47422 * 90.00025 * 23 21 19 25 25 H 1.48505 * 109.46897 * 209.99917 * 23 21 19 26 26 H 1.48500 * 109.47343 * 329.99688 * 23 21 19 27 27 S 1.70977 * 124.91556 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46838 * 269.95346 * 1 2 3 29 29 H 1.08996 * 109.47619 * 29.95562 * 1 2 3 30 30 H 1.09002 * 109.47329 * 149.96124 * 1 2 3 31 31 H 1.09004 * 109.47048 * 275.74979 * 5 4 3 32 32 H 1.09005 * 109.47380 * 35.75223 * 5 4 3 33 33 H 1.08995 * 109.47027 * 155.75417 * 5 4 3 34 34 H 1.08995 * 109.47260 * 350.06379 * 7 6 4 35 35 H 1.08999 * 109.47067 * 230.06404 * 7 6 4 36 36 H 1.08998 * 109.46917 * 276.30344 * 10 9 8 37 37 H 1.08998 * 109.47114 * 36.30370 * 10 9 8 38 38 H 1.08998 * 109.47281 * 156.30542 * 10 9 8 39 39 H 1.08990 * 109.47357 * 60.83858 * 15 14 13 40 40 H 1.09004 * 109.46795 * 180.84229 * 15 14 13 41 41 H 1.09005 * 109.46780 * 300.83411 * 15 14 13 42 42 H 1.09002 * 109.46930 * 180.02562 * 18 16 14 43 43 H 1.09000 * 109.47268 * 300.00143 * 18 16 14 44 44 H 1.09001 * 109.46698 * 60.00193 * 18 16 14 45 45 H 0.97000 * 120.00126 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0051 5 6 4.5306 2.0246 0.0132 6 6 3.9354 -0.4006 -0.0014 7 6 5.3575 -0.8993 -0.0024 8 7 5.6599 -1.5152 1.2920 9 6 6.2657 -0.9241 2.3659 10 6 6.7494 0.5009 2.4461 11 7 6.3417 -1.8195 3.3093 12 7 5.8295 -2.9278 2.9075 13 6 5.3952 -2.7974 1.6761 14 7 4.7832 -3.7771 0.9104 15 6 5.7005 -4.2945 -0.1137 16 6 4.2718 -4.8637 1.7565 17 1 3.6099 -4.4507 2.5177 18 6 5.4438 -5.5779 2.4329 19 6 3.5084 -5.8458 0.9060 20 1 3.4122 -5.6794 -0.1567 21 6 2.9326 -6.9571 1.4846 22 7 3.0500 -7.1601 2.7787 23 14 1.9856 -8.1741 0.4304 24 1 2.9119 -9.2216 -0.0696 25 1 0.9162 -8.8064 1.2439 26 1 1.3758 -7.4619 -0.7212 27 16 2.4856 -1.4020 -0.0006 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3634 0.8903 -0.5131 30 1 -0.3634 -0.8896 -0.5144 31 1 4.6930 2.3711 -1.0075 32 1 4.1304 2.8409 0.6146 33 1 5.4770 1.6903 0.4382 34 1 6.0356 -0.0635 -0.1744 35 1 5.4830 -1.6378 -0.7943 36 1 7.7432 0.5726 2.0044 37 1 6.0623 1.1489 1.9019 38 1 6.7924 0.8119 3.4899 39 1 6.5709 -4.7386 0.3691 40 1 5.1900 -5.0511 -0.7097 41 1 6.0209 -3.4777 -0.7605 42 1 5.0644 -6.3845 3.0604 43 1 6.1058 -5.9909 1.6718 44 1 5.9960 -4.8675 3.0481 45 1 2.6446 -7.9416 3.1858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001381597979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:03 Heat of formation + Delta-G solvation = 144.222545 kcal Electronic energy + Delta-G solvation = -27854.513304 eV Core-core repulsion = 24229.359151 eV Total energy + Delta-G solvation = -3625.154153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.52790 -39.93825 -37.32524 -35.53504 -33.02395 -32.77877 -31.50984 -29.63332 -29.09336 -28.61994 -27.36037 -25.47355 -25.08348 -24.76471 -22.76366 -21.72636 -20.58027 -19.63643 -18.85617 -17.84791 -16.75369 -16.08835 -16.03794 -15.51242 -15.24660 -15.02862 -14.58185 -14.30436 -13.68247 -13.65427 -13.49385 -13.41805 -13.35571 -13.05726 -12.90137 -12.62215 -12.36975 -12.26456 -12.11450 -11.93697 -11.59001 -11.40365 -11.22508 -11.01242 -10.93071 -10.74583 -10.42001 -10.21715 -10.08784 -9.96569 -9.71785 -9.47686 -9.18723 -8.84557 -8.72673 -8.59105 -8.40491 -7.47752 -6.03561 -4.10903 0.61624 1.42837 1.88539 2.18524 2.52657 2.87759 3.27279 3.34594 3.36422 3.37573 4.01175 4.31799 4.49369 4.58747 4.63980 4.64774 4.87169 4.94594 5.05260 5.14683 5.26925 5.27917 5.34775 5.39347 5.40309 5.54528 5.61579 5.69178 5.76523 5.83395 5.91131 6.07791 6.13382 6.23388 6.32305 6.47446 6.82864 6.99629 7.16738 7.35275 7.50522 7.67268 7.72643 7.74088 7.96399 8.31664 8.47102 8.90719 9.33346 9.53548 11.02480 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.011311 B = 0.004961 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.791564 B = 5642.917541 C = 7398.633112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.023 3.977 3 N -0.483 5.483 4 C 0.083 3.917 5 C -0.085 4.085 6 C -0.275 4.275 7 C 0.198 3.802 8 N -0.484 5.484 9 C 0.153 3.847 10 C -0.064 4.064 11 N -0.290 5.290 12 N -0.310 5.310 13 C 0.382 3.618 14 N -0.458 5.458 15 C 0.036 3.964 16 C 0.232 3.768 17 H 0.046 0.954 18 C -0.182 4.182 19 C -0.511 4.511 20 H 0.063 0.937 21 C 0.065 3.935 22 N -0.884 5.884 23 Si 0.897 3.103 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 S 0.232 5.768 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.037 0.963 40 H 0.095 0.905 41 H 0.041 0.959 42 H 0.087 0.913 43 H 0.020 0.980 44 H 0.056 0.944 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 16.886 -8.683 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.253 4.253 3 N -0.200 5.200 4 C -0.053 4.053 5 C -0.144 4.144 6 C -0.398 4.398 7 C 0.073 3.927 8 N -0.181 5.181 9 C -0.114 4.114 10 C -0.123 4.123 11 N -0.130 5.130 12 N -0.153 5.153 13 C 0.026 3.974 14 N -0.182 5.182 15 C -0.111 4.111 16 C 0.128 3.872 17 H 0.064 0.936 18 C -0.241 4.241 19 C -0.550 4.550 20 H 0.081 0.919 21 C -0.138 4.138 22 N -0.522 5.522 23 Si 0.724 3.276 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.198 1.198 27 S 0.490 5.510 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.626 15.687 -7.445 17.440 hybrid contribution 0.204 0.130 -1.403 1.424 sum 1.829 15.817 -8.848 18.216 Atomic orbital electron populations 1.20430 0.85343 1.04034 1.03950 1.27229 1.02207 0.93093 1.02751 1.66181 1.04003 1.32232 1.17548 1.20081 0.90594 0.93431 1.01218 1.20514 0.95784 0.94968 1.03095 1.25808 1.00300 0.96770 1.16912 1.19903 0.90025 0.98976 0.83823 1.46380 1.47920 1.10288 1.13526 1.24546 1.03004 0.98847 0.85021 1.20229 1.00866 0.86468 1.04775 1.73991 1.17918 0.97112 1.23975 1.74883 1.15830 1.15355 1.09193 1.23253 0.96644 0.85211 0.92275 1.59413 1.30541 1.13468 1.14792 1.22354 0.95356 0.99314 0.94065 1.19326 0.92620 0.84658 0.90609 0.93630 1.22603 0.98246 1.02682 1.00587 1.21002 1.33365 1.06113 0.94536 0.91858 1.24879 0.96254 0.97714 0.94961 1.69924 1.44210 1.28311 1.09715 0.86529 0.79635 0.81214 0.80193 1.20737 1.21227 1.19847 1.85184 0.94486 1.07343 1.63965 0.89607 0.89571 0.89926 0.90479 0.90381 0.90752 0.87428 0.87593 0.90315 0.90692 0.88962 0.94449 0.88644 0.94035 0.89479 0.96105 0.92590 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.46 36.01 0.38 -0.41 16 2 C 0.02 0.32 7.39 -13.46 -0.10 0.22 16 3 N -0.48 -6.88 10.53 -8.06 -0.08 -6.97 16 4 C 0.08 1.06 6.74 -84.23 -0.57 0.50 16 5 C -0.08 -0.75 9.92 36.01 0.36 -0.39 16 6 C -0.28 -3.75 6.17 -35.92 -0.22 -3.97 16 7 C 0.20 2.45 6.37 -5.20 -0.03 2.42 16 8 N -0.48 -7.87 2.79 -115.37 -0.32 -8.20 16 9 C 0.15 2.48 8.07 -154.02 -1.24 1.23 16 10 C -0.06 -0.66 9.96 36.00 0.36 -0.30 16 11 N -0.29 -5.97 12.18 32.99 0.40 -5.56 16 12 N -0.31 -7.07 8.89 30.31 0.27 -6.80 16 13 C 0.38 7.76 6.67 -318.87 -2.13 5.63 16 14 N -0.46 -9.51 4.77 -176.08 -0.84 -10.35 16 15 C 0.04 0.66 8.73 60.06 0.52 1.19 16 16 C 0.23 5.81 2.12 -68.86 -0.15 5.66 16 17 H 0.05 1.32 8.11 -51.93 -0.42 0.90 16 18 C -0.18 -4.61 8.27 37.16 0.31 -4.30 16 19 C -0.51 -13.27 7.90 -34.44 -0.27 -13.55 16 20 H 0.06 1.59 6.76 -52.49 -0.35 1.24 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 22 N -0.88 -24.94 11.32 55.43 0.63 -24.32 16 23 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 S 0.23 3.52 23.18 -107.50 -2.49 1.03 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.53 3.93 -51.93 -0.20 0.33 16 34 H 0.11 0.95 6.14 -51.93 -0.32 0.63 16 35 H 0.11 1.27 6.30 -51.93 -0.33 0.94 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.64 5.32 -51.93 -0.28 0.37 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.71 6.46 -51.93 -0.34 0.37 16 40 H 0.10 1.77 6.44 -51.93 -0.33 1.43 16 41 H 0.04 0.61 6.34 -51.93 -0.33 0.28 16 42 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 43 H 0.02 0.49 6.46 -51.93 -0.34 0.16 16 44 H 0.06 1.42 5.28 -51.93 -0.27 1.15 16 45 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -33.01 367.51 -10.72 -43.73 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.92 Total: 0.80 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -2.88 Total: -4.44 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: 0.05 Total: -62.20 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.49 Total: 1.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.01 -10.72 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381597979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.951 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds