Wall clock time and date at job start Tue Mar 31 2020 19:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29028 * 124.91503 * 2 1 4 4 C 1.31779 * 117.12182 * 179.75131 * 3 2 1 5 5 C 1.50704 * 122.74669 * 180.33703 * 4 3 2 6 6 C 1.33637 * 114.50275 * 0.52080 * 4 3 2 7 7 C 1.50701 * 126.03806 * 179.78556 * 6 4 3 8 8 N 1.46495 * 109.47060 * 110.06582 * 7 6 4 9 9 C 1.36742 * 127.13399 * 264.40466 * 8 7 6 10 10 C 1.50695 * 126.34936 * 0.26642 * 9 8 7 11 11 N 1.30292 * 107.30373 * 179.97438 * 9 8 7 12 12 N 1.28533 * 110.05796 * 0.02562 * 11 9 8 13 13 C 1.31222 * 109.85255 * 359.97438 * 12 11 9 14 14 N 1.38584 * 126.46655 * 180.02562 * 13 12 11 15 15 C 1.46899 * 111.00132 * 254.58227 * 14 13 12 16 16 C 1.46901 * 111.00298 * 18.54067 * 14 13 12 17 17 H 1.08991 * 109.47442 * 54.99302 * 16 14 13 18 18 C 1.53008 * 109.46681 * 294.99516 * 16 14 13 19 19 C 1.50695 * 109.47115 * 175.00071 * 16 14 13 20 20 H 1.07993 * 120.00700 * 359.97438 * 19 16 14 21 21 C 1.37888 * 119.99770 * 179.97438 * 19 16 14 22 22 N 1.31513 * 120.00075 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 119.99670 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47422 * 90.00025 * 23 21 19 25 25 H 1.48505 * 109.46897 * 209.99917 * 23 21 19 26 26 H 1.48500 * 109.47343 * 329.99688 * 23 21 19 27 27 S 1.70977 * 124.91556 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46838 * 269.95346 * 1 2 3 29 29 H 1.08996 * 109.47619 * 29.95562 * 1 2 3 30 30 H 1.09002 * 109.47329 * 149.96124 * 1 2 3 31 31 H 1.09004 * 109.47048 * 275.74979 * 5 4 3 32 32 H 1.09005 * 109.47380 * 35.75223 * 5 4 3 33 33 H 1.08995 * 109.47027 * 155.75417 * 5 4 3 34 34 H 1.08995 * 109.47260 * 350.06379 * 7 6 4 35 35 H 1.08999 * 109.47067 * 230.06404 * 7 6 4 36 36 H 1.08998 * 109.46917 * 276.30344 * 10 9 8 37 37 H 1.08998 * 109.47114 * 36.30370 * 10 9 8 38 38 H 1.08998 * 109.47281 * 156.30542 * 10 9 8 39 39 H 1.08990 * 109.47357 * 60.83858 * 15 14 13 40 40 H 1.09004 * 109.46795 * 180.84229 * 15 14 13 41 41 H 1.09005 * 109.46780 * 300.83411 * 15 14 13 42 42 H 1.09002 * 109.46930 * 180.02562 * 18 16 14 43 43 H 1.09000 * 109.47268 * 300.00143 * 18 16 14 44 44 H 1.09001 * 109.46698 * 60.00193 * 18 16 14 45 45 H 0.97000 * 120.00126 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0051 5 6 4.5306 2.0246 0.0132 6 6 3.9354 -0.4006 -0.0014 7 6 5.3575 -0.8993 -0.0024 8 7 5.6599 -1.5152 1.2920 9 6 6.2657 -0.9241 2.3659 10 6 6.7494 0.5009 2.4461 11 7 6.3417 -1.8195 3.3093 12 7 5.8295 -2.9278 2.9075 13 6 5.3952 -2.7974 1.6761 14 7 4.7832 -3.7771 0.9104 15 6 5.7005 -4.2945 -0.1137 16 6 4.2718 -4.8637 1.7565 17 1 3.6099 -4.4507 2.5177 18 6 5.4438 -5.5779 2.4329 19 6 3.5084 -5.8458 0.9060 20 1 3.4122 -5.6794 -0.1567 21 6 2.9326 -6.9571 1.4846 22 7 3.0500 -7.1601 2.7787 23 14 1.9856 -8.1741 0.4304 24 1 2.9119 -9.2216 -0.0696 25 1 0.9162 -8.8064 1.2439 26 1 1.3758 -7.4619 -0.7212 27 16 2.4856 -1.4020 -0.0006 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3634 0.8903 -0.5131 30 1 -0.3634 -0.8896 -0.5144 31 1 4.6930 2.3711 -1.0075 32 1 4.1304 2.8409 0.6146 33 1 5.4770 1.6903 0.4382 34 1 6.0356 -0.0635 -0.1744 35 1 5.4830 -1.6378 -0.7943 36 1 7.7432 0.5726 2.0044 37 1 6.0623 1.1489 1.9019 38 1 6.7924 0.8119 3.4899 39 1 6.5709 -4.7386 0.3691 40 1 5.1900 -5.0511 -0.7097 41 1 6.0209 -3.4777 -0.7605 42 1 5.0644 -6.3845 3.0604 43 1 6.1058 -5.9909 1.6718 44 1 5.9960 -4.8675 3.0481 45 1 2.6446 -7.9416 3.1858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001381597979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:02 Heat of formation + Delta-G solvation = 124.907284 kcal Electronic energy + Delta-G solvation = -27855.350876 eV Core-core repulsion = 24229.359151 eV Total energy + Delta-G solvation = -3625.991726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.93589 -40.94348 -39.03926 -36.73342 -34.86083 -33.88587 -32.74991 -30.82823 -30.41148 -29.90041 -28.62645 -27.20769 -26.71384 -26.03133 -23.71851 -23.40711 -21.85551 -21.25740 -19.96658 -18.87329 -18.34428 -17.76998 -17.36619 -17.13162 -16.49968 -16.17996 -15.97296 -15.67606 -15.14563 -14.92583 -14.59437 -14.49529 -14.34469 -14.26419 -13.92378 -13.71156 -13.52494 -13.30070 -13.22406 -13.12648 -12.97752 -12.89332 -12.76252 -12.61126 -12.51384 -12.20776 -12.06717 -12.00079 -11.95870 -11.43131 -11.24441 -10.78086 -10.56865 -10.46188 -10.33391 -10.27528 -9.61347 -9.08948 -8.09119 -6.23588 -0.42174 0.38375 0.81988 0.89030 1.32619 1.45612 1.46336 1.56740 1.80282 1.91753 2.43486 3.05340 3.11396 3.20750 3.49186 3.60799 3.66593 3.97977 4.02551 4.08869 4.19135 4.25547 4.48775 4.52306 4.55656 4.58940 4.67249 4.69255 4.78174 4.82377 4.89160 4.92343 4.98228 5.00256 5.07884 5.09381 5.17417 5.35449 5.40311 5.49778 5.65894 5.68550 5.88326 6.08681 6.26055 6.64064 6.69762 6.86063 7.45076 7.88230 8.97293 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.011311 B = 0.004961 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.791564 B = 5642.917541 C = 7398.633112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.036 3.964 3 N -0.500 5.500 4 C 0.085 3.915 5 C -0.084 4.084 6 C -0.279 4.279 7 C 0.193 3.807 8 N -0.476 5.476 9 C 0.178 3.822 10 C -0.064 4.064 11 N -0.341 5.341 12 N -0.361 5.361 13 C 0.366 3.634 14 N -0.452 5.452 15 C 0.038 3.962 16 C 0.248 3.752 17 H -0.006 1.006 18 C -0.165 4.165 19 C -0.516 4.516 20 H 0.072 0.928 21 C 0.013 3.987 22 N -0.920 5.920 23 Si 0.964 3.036 24 H -0.275 1.275 25 H -0.289 1.289 26 H -0.261 1.261 27 S 0.149 5.851 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.024 0.976 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.026 0.974 44 H 0.052 0.948 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 19.670 -11.162 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.241 4.241 3 N -0.217 5.217 4 C -0.050 4.050 5 C -0.143 4.143 6 C -0.401 4.401 7 C 0.070 3.930 8 N -0.172 5.172 9 C -0.090 4.090 10 C -0.123 4.123 11 N -0.179 5.179 12 N -0.203 5.203 13 C 0.008 3.992 14 N -0.175 5.175 15 C -0.109 4.109 16 C 0.142 3.858 17 H 0.012 0.988 18 C -0.225 4.225 19 C -0.554 4.554 20 H 0.090 0.910 21 C -0.186 4.186 22 N -0.559 5.559 23 Si 0.789 3.211 24 H -0.201 1.201 25 H -0.215 1.215 26 H -0.185 1.185 27 S 0.407 5.593 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.173 0.827 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.043 0.957 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.408 18.510 -9.952 21.153 hybrid contribution -0.027 -0.522 -0.625 0.815 sum 2.381 17.988 -10.576 21.002 Atomic orbital electron populations 1.20597 0.83311 1.05358 1.04689 1.27717 1.03336 0.91813 1.01190 1.66293 1.04913 1.32118 1.18344 1.20753 0.90758 0.94345 0.99164 1.20702 0.95368 0.93470 1.04761 1.25821 0.99707 0.96310 1.18266 1.20345 0.90303 1.00483 0.81906 1.46531 1.47044 1.08736 1.14889 1.25689 0.99725 1.00106 0.83516 1.20584 1.03055 0.82551 1.06092 1.73887 1.20303 0.97638 1.26118 1.74692 1.17407 1.17441 1.10810 1.23098 0.97435 0.86605 0.92029 1.59250 1.31678 1.12361 1.14258 1.22414 0.94187 1.00655 0.93608 1.18831 0.91616 0.85399 0.89928 0.98834 1.22404 0.98380 1.01529 1.00141 1.21277 1.33066 1.06142 0.94923 0.91000 1.25741 0.97206 0.99657 0.95995 1.70094 1.45338 1.28910 1.11598 0.85463 0.78130 0.78814 0.78659 1.20077 1.21503 1.18533 1.85464 0.97658 1.10281 1.65892 0.89024 0.87932 0.88858 0.88338 0.90008 0.88649 0.82730 0.87075 0.86787 0.88249 0.88406 0.95732 0.89132 0.90114 0.92496 0.95510 0.92928 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.46 71.24 0.75 -0.78 16 2 C 0.04 0.95 7.39 88.52 0.65 1.60 16 3 N -0.50 -13.23 10.53 -179.40 -1.89 -15.12 16 4 C 0.08 1.93 6.74 41.52 0.28 2.21 16 5 C -0.08 -1.09 9.92 71.24 0.71 -0.38 16 6 C -0.28 -7.01 6.17 24.64 0.15 -6.86 16 7 C 0.19 4.15 6.37 85.63 0.55 4.70 16 8 N -0.48 -14.67 2.79 -518.93 -1.45 -16.11 16 9 C 0.18 5.41 8.07 137.64 1.11 6.52 16 10 C -0.06 -1.04 9.96 71.23 0.71 -0.33 16 11 N -0.34 -14.12 12.18 -49.54 -0.60 -14.72 16 12 N -0.36 -17.09 8.89 -58.00 -0.52 -17.61 16 13 C 0.37 15.07 6.67 260.11 1.73 16.80 16 14 N -0.45 -19.17 4.77 -711.01 -3.39 -22.56 16 15 C 0.04 1.37 8.73 127.69 1.11 2.49 16 16 C 0.25 13.04 2.12 44.17 0.09 13.13 16 17 H -0.01 -0.39 8.11 -2.39 -0.02 -0.41 16 18 C -0.16 -8.82 8.27 71.98 0.60 -8.22 16 19 C -0.52 -27.48 7.90 25.60 0.20 -27.28 16 20 H 0.07 3.63 6.76 -2.91 -0.02 3.61 16 21 C 0.01 0.72 5.30 84.66 0.45 1.17 16 22 N -0.92 -54.19 11.32 21.45 0.24 -53.95 16 23 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 27 S 0.15 4.55 23.18 -56.49 -1.31 3.24 16 28 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.10 0.79 3.93 -2.39 -0.01 0.78 16 34 H 0.16 1.84 6.14 -2.39 -0.01 1.83 16 35 H 0.11 2.31 6.30 -2.39 -0.02 2.29 16 36 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.14 5.32 -2.39 -0.01 1.13 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.02 0.93 6.46 -2.39 -0.02 0.91 16 40 H 0.09 3.31 6.44 -2.38 -0.02 3.30 16 41 H 0.08 2.23 6.34 -2.38 -0.02 2.21 16 42 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 43 H 0.03 1.33 6.46 -2.39 -0.02 1.31 16 44 H 0.05 2.84 5.28 -2.39 -0.01 2.82 16 45 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -77.68 367.51 3.24 -74.44 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.03 Total: 12.87 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 9.09 Total: 4.77 kcal Atomic # 7 Polarization: -132.47 SS G_CDS: -7.61 Total: -140.08 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.31 Total: 3.24 kcal Total: -77.68 3.24 -74.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381597979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.347 kcal (2) G-P(sol) polarization free energy of solvation -77.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds