Wall clock time and date at job start Tue Mar 31 2020 19:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30298 * 126.34566 * 2 1 4 4 N 1.28529 * 110.05143 * 179.76062 * 3 2 1 5 5 C 1.31214 * 109.86048 * 0.39410 * 4 3 2 6 6 N 1.38582 * 126.47132 * 179.88102 * 5 4 3 7 7 C 1.46902 * 110.99810 * 306.90057 * 6 5 4 8 8 C 1.46901 * 110.99799 * 70.84971 * 6 5 4 9 9 H 1.08997 * 109.46788 * 55.00795 * 8 6 5 10 10 C 1.52990 * 109.47314 * 294.99727 * 8 6 5 11 11 C 1.50707 * 109.46701 * 175.00020 * 8 6 5 12 12 H 1.07997 * 119.99827 * 26.31460 * 11 8 6 13 13 C 1.37875 * 119.99917 * 206.31528 * 11 8 6 14 14 N 1.31509 * 119.99940 * 185.32442 * 13 11 8 15 15 Si 1.86798 * 119.99977 * 5.32757 * 13 11 8 16 16 H 1.48501 * 109.46961 * 93.13421 * 15 13 11 17 17 H 1.48495 * 109.47264 * 213.13643 * 15 13 11 18 18 H 1.48501 * 109.47186 * 333.13658 * 15 13 11 19 19 N 1.36455 * 107.05373 * 359.61817 * 5 4 3 20 20 C 1.46499 * 127.13546 * 180.24818 * 19 5 4 21 21 C 1.52994 * 109.47105 * 94.43726 * 20 19 5 22 22 C 1.52998 * 109.47178 * 180.02562 * 21 20 19 23 23 C 1.50700 * 109.47554 * 179.97438 * 22 21 20 24 24 N 1.29031 * 124.91177 * 89.69379 * 23 22 21 25 25 C 1.31789 * 117.12191 * 179.81700 * 24 23 22 26 26 C 1.33645 * 114.49765 * 0.47479 * 25 24 23 27 27 S 1.70970 * 124.91917 * 270.00318 * 23 22 21 28 28 H 1.09002 * 109.47733 * 269.99647 * 1 2 3 29 29 H 1.09001 * 109.47342 * 30.00163 * 1 2 3 30 30 H 1.09003 * 109.46965 * 150.00012 * 1 2 3 31 31 H 1.09000 * 109.47482 * 60.26890 * 7 6 5 32 32 H 1.09005 * 109.47152 * 180.26886 * 7 6 5 33 33 H 1.09003 * 109.46876 * 300.26711 * 7 6 5 34 34 H 1.08997 * 109.48057 * 306.52812 * 10 8 6 35 35 H 1.09009 * 109.46963 * 66.53254 * 10 8 6 36 36 H 1.09003 * 109.47155 * 186.52505 * 10 8 6 37 37 H 0.97003 * 119.99881 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47222 * 214.44222 * 20 19 5 39 39 H 1.09002 * 109.46755 * 334.44013 * 20 19 5 40 40 H 1.09004 * 109.47408 * 299.99917 * 21 20 19 41 41 H 1.08994 * 109.47158 * 59.99840 * 21 20 19 42 42 H 1.08998 * 109.47144 * 300.00492 * 22 21 20 43 43 H 1.09003 * 109.47265 * 60.00091 * 22 21 20 44 44 H 1.07994 * 122.75248 * 180.22326 * 25 24 23 45 45 H 1.07999 * 126.03042 * 179.71929 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5128 0.6889 0.0050 5 6 3.5945 -0.6207 0.0001 6 7 4.7580 -1.3735 0.0008 7 6 5.6508 -0.9637 -1.0914 8 6 5.4402 -1.2869 1.2989 9 1 4.7510 -1.5781 2.0916 10 6 5.9097 0.1501 1.5335 11 6 6.6304 -2.2114 1.3035 12 1 7.1164 -2.4705 0.3745 13 6 7.0988 -2.7263 2.4936 14 7 8.1983 -3.4475 2.5106 15 14 6.1714 -2.3996 4.0819 16 1 5.2214 -3.5118 4.3382 17 1 7.1356 -2.3030 5.2072 18 1 5.4201 -1.1242 3.9631 19 7 2.3173 -1.1013 0.0000 20 6 1.9009 -2.5058 0.0004 21 6 1.6487 -2.9626 1.4387 22 6 1.2144 -4.4296 1.4392 23 6 0.9666 -4.8798 2.8558 24 7 -0.1650 -4.7958 3.4701 25 6 -0.2101 -5.2406 4.7098 26 6 0.9504 -5.7177 5.1700 27 16 2.1459 -5.5687 3.8843 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 5.9181 0.0857 -0.9679 32 1 6.5540 -1.5736 -1.0706 33 1 5.1427 -1.0993 -2.0462 34 1 6.5055 0.4812 0.6829 35 1 5.0431 0.8018 1.6458 36 1 6.5150 0.1913 2.4390 37 1 8.5281 -3.8094 3.3480 38 1 0.9852 -2.6135 -0.5809 39 1 2.6866 -3.1178 -0.4426 40 1 2.5645 -2.8550 2.0200 41 1 0.8632 -2.3506 1.8817 42 1 0.2989 -4.5377 0.8577 43 1 2.0004 -5.0414 0.9962 44 1 -1.1100 -5.2176 5.3064 45 1 1.1246 -6.1225 6.1560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411686633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:25 Heat of formation + Delta-G solvation = 136.201387 kcal Electronic energy + Delta-G solvation = -27424.629318 eV Core-core repulsion = 23799.127341 eV Total energy + Delta-G solvation = -3625.501977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.60193 -39.78155 -37.45064 -36.29405 -33.46421 -32.83538 -31.55858 -30.17265 -29.58539 -27.44139 -27.04824 -25.49555 -25.09762 -24.35964 -22.33009 -21.48781 -20.48854 -20.02600 -19.37852 -18.15139 -17.11998 -16.53382 -16.13161 -15.67965 -15.37092 -15.21780 -14.84415 -14.59313 -14.15533 -13.82607 -13.75914 -13.42584 -13.34521 -12.91671 -12.74953 -12.64776 -12.44572 -12.19732 -11.98882 -11.91686 -11.56474 -11.54935 -11.43845 -11.10859 -11.05040 -10.92792 -10.49680 -10.41541 -10.05182 -9.90193 -9.79754 -9.73085 -9.49868 -9.11748 -8.99688 -8.66087 -8.54164 -7.88064 -6.19276 -4.18427 0.56704 1.26179 1.67219 2.08006 2.56430 2.71157 3.17784 3.23415 3.28389 3.32523 3.92394 4.30831 4.40660 4.54163 4.55993 4.69570 4.89206 4.97868 5.05424 5.08635 5.17427 5.19208 5.32284 5.36132 5.42837 5.49207 5.61676 5.70516 5.76162 5.90792 5.99910 6.04574 6.15280 6.21801 6.28332 6.41773 6.56721 6.65064 6.68597 6.86388 7.07731 7.20857 7.44668 7.57342 7.73076 7.95095 8.47418 8.84818 9.15627 9.41810 10.92618 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.008246 B = 0.005680 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3394.816638 B = 4928.112402 C = 7458.057754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.158 3.842 3 N -0.295 5.295 4 N -0.317 5.317 5 C 0.369 3.631 6 N -0.460 5.460 7 C 0.042 3.958 8 C 0.195 3.805 9 H 0.036 0.964 10 C -0.174 4.174 11 C -0.504 4.504 12 H 0.085 0.915 13 C 0.081 3.919 14 N -0.891 5.891 15 Si 0.858 3.142 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.263 1.263 19 N -0.469 5.469 20 C 0.117 3.883 21 C -0.130 4.130 22 C -0.039 4.039 23 C 0.049 3.951 24 N -0.477 5.477 25 C 0.035 3.965 26 C -0.269 4.269 27 S 0.147 5.853 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.040 0.960 36 H 0.049 0.951 37 H 0.266 0.734 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.174 0.826 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.181 -4.782 -0.843 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.109 4.109 3 N -0.136 5.136 4 N -0.160 5.160 5 C 0.013 3.987 6 N -0.186 5.186 7 C -0.105 4.105 8 C 0.089 3.911 9 H 0.054 0.946 10 C -0.233 4.233 11 C -0.542 4.542 12 H 0.103 0.897 13 C -0.122 4.122 14 N -0.529 5.529 15 Si 0.685 3.315 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.187 1.187 19 N -0.163 5.163 20 C -0.007 4.007 21 C -0.170 4.170 22 C -0.080 4.080 23 C -0.229 4.229 24 N -0.192 5.192 25 C -0.116 4.116 26 C -0.408 4.408 27 S 0.401 5.599 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.191 0.809 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.130 -3.979 -1.181 16.655 hybrid contribution -1.292 -0.580 1.943 2.404 sum -17.422 -4.559 0.762 18.024 Atomic orbital electron populations 1.20107 0.84253 1.03897 1.03541 1.24662 0.96378 0.82914 1.06982 1.73948 0.97001 1.24347 1.18344 1.74711 1.11310 1.08871 1.21088 1.22994 0.86343 0.88468 1.00914 1.59426 1.02040 1.48953 1.08138 1.22318 0.96890 1.00466 0.90808 1.19823 0.93736 0.93846 0.83700 0.94568 1.22646 1.00430 0.98886 1.01378 1.20821 1.10567 1.27290 0.95492 0.89690 1.24815 0.94633 0.94384 0.98350 1.69865 1.21007 1.34833 1.27145 0.87147 0.80611 0.79612 0.84168 1.19661 1.21064 1.18749 1.46344 1.06461 1.07981 1.55495 1.21769 1.02412 0.78823 0.97694 1.21941 1.03302 0.94907 0.96857 1.20158 1.03637 0.96071 0.88155 1.27025 0.91760 1.02204 1.01884 1.66285 1.25114 1.19119 1.08713 1.21769 0.98839 0.99599 0.91428 1.27174 0.96577 1.11758 1.05322 1.84663 1.14721 1.55555 1.04930 0.90155 0.89128 0.90780 0.93952 0.88798 0.93381 0.92807 0.94113 0.93209 0.92436 0.89084 0.87190 0.90175 0.90747 0.88388 0.88628 0.80891 0.80659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.26 36.00 0.37 -0.22 16 2 C 0.16 2.45 8.07 -154.02 -1.24 1.21 16 3 N -0.30 -5.72 12.18 32.99 0.40 -5.32 16 4 N -0.32 -6.68 9.98 30.31 0.30 -6.38 16 5 C 0.37 7.22 6.20 -318.87 -1.98 5.24 16 6 N -0.46 -9.42 4.76 -176.08 -0.84 -10.25 16 7 C 0.04 0.81 8.72 60.07 0.52 1.33 16 8 C 0.19 4.52 1.85 -68.87 -0.13 4.39 16 9 H 0.04 0.89 5.63 -51.93 -0.29 0.59 16 10 C -0.17 -4.00 7.99 37.15 0.30 -3.70 16 11 C -0.50 -13.14 8.64 -34.44 -0.30 -13.44 16 12 H 0.09 2.36 6.30 -52.49 -0.33 2.03 16 13 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 14 N -0.89 -25.65 13.96 55.43 0.77 -24.88 16 15 Si 0.86 20.57 26.41 -169.99 -4.49 16.08 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.26 -6.29 6.11 56.52 0.35 -5.95 16 19 N -0.47 -7.47 2.81 -114.09 -0.32 -7.79 16 20 C 0.12 1.38 5.98 -4.05 -0.02 1.35 16 21 C -0.13 -1.59 5.52 -26.74 -0.15 -1.74 16 22 C -0.04 -0.40 5.80 -27.88 -0.16 -0.56 16 23 C 0.05 0.61 6.64 -13.45 -0.09 0.52 16 24 N -0.48 -6.15 10.54 -11.86 -0.13 -6.28 16 25 C 0.04 0.39 11.35 -19.18 -0.22 0.17 16 26 C -0.27 -2.89 11.37 29.12 0.33 -2.56 16 27 S 0.15 1.88 23.18 -107.50 -2.49 -0.61 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.56 7.37 -51.93 -0.38 0.17 16 31 H 0.04 0.83 6.22 -51.93 -0.32 0.50 16 32 H 0.09 1.85 6.09 -51.93 -0.32 1.53 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 1.19 6.13 -51.93 -0.32 0.87 16 35 H 0.04 0.94 6.36 -51.92 -0.33 0.60 16 36 H 0.05 1.16 7.13 -51.93 -0.37 0.79 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.09 0.76 7.39 -51.93 -0.38 0.37 16 39 H 0.11 1.34 8.12 -51.93 -0.42 0.92 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 45 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -32.92 376.14 -10.45 -43.36 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.46 Total: 2.28 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.86 Total: -5.89 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.19 Total: -60.90 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.49 Total: 16.08 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.49 Total: -0.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.92 -10.45 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411686633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.565 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds