Wall clock time and date at job start Tue Mar 31 2020 19:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30298 * 126.34566 * 2 1 4 4 N 1.28529 * 110.05143 * 179.76062 * 3 2 1 5 5 C 1.31214 * 109.86048 * 0.39410 * 4 3 2 6 6 N 1.38582 * 126.47132 * 179.88102 * 5 4 3 7 7 C 1.46902 * 110.99810 * 306.90057 * 6 5 4 8 8 C 1.46901 * 110.99799 * 70.84971 * 6 5 4 9 9 H 1.08997 * 109.46788 * 55.00795 * 8 6 5 10 10 C 1.52990 * 109.47314 * 294.99727 * 8 6 5 11 11 C 1.50707 * 109.46701 * 175.00020 * 8 6 5 12 12 H 1.07997 * 119.99827 * 26.31460 * 11 8 6 13 13 C 1.37875 * 119.99917 * 206.31528 * 11 8 6 14 14 N 1.31509 * 119.99940 * 185.32442 * 13 11 8 15 15 Si 1.86798 * 119.99977 * 5.32757 * 13 11 8 16 16 H 1.48501 * 109.46961 * 93.13421 * 15 13 11 17 17 H 1.48495 * 109.47264 * 213.13643 * 15 13 11 18 18 H 1.48501 * 109.47186 * 333.13658 * 15 13 11 19 19 N 1.36455 * 107.05373 * 359.61817 * 5 4 3 20 20 C 1.46499 * 127.13546 * 180.24818 * 19 5 4 21 21 C 1.52994 * 109.47105 * 94.43726 * 20 19 5 22 22 C 1.52998 * 109.47178 * 180.02562 * 21 20 19 23 23 C 1.50700 * 109.47554 * 179.97438 * 22 21 20 24 24 N 1.29031 * 124.91177 * 89.69379 * 23 22 21 25 25 C 1.31789 * 117.12191 * 179.81700 * 24 23 22 26 26 C 1.33645 * 114.49765 * 0.47479 * 25 24 23 27 27 S 1.70970 * 124.91917 * 270.00318 * 23 22 21 28 28 H 1.09002 * 109.47733 * 269.99647 * 1 2 3 29 29 H 1.09001 * 109.47342 * 30.00163 * 1 2 3 30 30 H 1.09003 * 109.46965 * 150.00012 * 1 2 3 31 31 H 1.09000 * 109.47482 * 60.26890 * 7 6 5 32 32 H 1.09005 * 109.47152 * 180.26886 * 7 6 5 33 33 H 1.09003 * 109.46876 * 300.26711 * 7 6 5 34 34 H 1.08997 * 109.48057 * 306.52812 * 10 8 6 35 35 H 1.09009 * 109.46963 * 66.53254 * 10 8 6 36 36 H 1.09003 * 109.47155 * 186.52505 * 10 8 6 37 37 H 0.97003 * 119.99881 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47222 * 214.44222 * 20 19 5 39 39 H 1.09002 * 109.46755 * 334.44013 * 20 19 5 40 40 H 1.09004 * 109.47408 * 299.99917 * 21 20 19 41 41 H 1.08994 * 109.47158 * 59.99840 * 21 20 19 42 42 H 1.08998 * 109.47144 * 300.00492 * 22 21 20 43 43 H 1.09003 * 109.47265 * 60.00091 * 22 21 20 44 44 H 1.07994 * 122.75248 * 180.22326 * 25 24 23 45 45 H 1.07999 * 126.03042 * 179.71929 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5128 0.6889 0.0050 5 6 3.5945 -0.6207 0.0001 6 7 4.7580 -1.3735 0.0008 7 6 5.6508 -0.9637 -1.0914 8 6 5.4402 -1.2869 1.2989 9 1 4.7510 -1.5781 2.0916 10 6 5.9097 0.1501 1.5335 11 6 6.6304 -2.2114 1.3035 12 1 7.1164 -2.4705 0.3745 13 6 7.0988 -2.7263 2.4936 14 7 8.1983 -3.4475 2.5106 15 14 6.1714 -2.3996 4.0819 16 1 5.2214 -3.5118 4.3382 17 1 7.1356 -2.3030 5.2072 18 1 5.4201 -1.1242 3.9631 19 7 2.3173 -1.1013 0.0000 20 6 1.9009 -2.5058 0.0004 21 6 1.6487 -2.9626 1.4387 22 6 1.2144 -4.4296 1.4392 23 6 0.9666 -4.8798 2.8558 24 7 -0.1650 -4.7958 3.4701 25 6 -0.2101 -5.2406 4.7098 26 6 0.9504 -5.7177 5.1700 27 16 2.1459 -5.5687 3.8843 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 5.9181 0.0857 -0.9679 32 1 6.5540 -1.5736 -1.0706 33 1 5.1427 -1.0993 -2.0462 34 1 6.5055 0.4812 0.6829 35 1 5.0431 0.8018 1.6458 36 1 6.5150 0.1913 2.4390 37 1 8.5281 -3.8094 3.3480 38 1 0.9852 -2.6135 -0.5809 39 1 2.6866 -3.1178 -0.4426 40 1 2.5645 -2.8550 2.0200 41 1 0.8632 -2.3506 1.8817 42 1 0.2989 -4.5377 0.8577 43 1 2.0004 -5.0414 0.9962 44 1 -1.1100 -5.2176 5.3064 45 1 1.1246 -6.1225 6.1560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411686633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:24 Heat of formation + Delta-G solvation = 116.846947 kcal Electronic energy + Delta-G solvation = -27425.468589 eV Core-core repulsion = 23799.127341 eV Total energy + Delta-G solvation = -3626.341248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.94916 -40.65600 -39.13536 -37.34566 -34.80630 -34.51546 -32.86064 -31.49139 -30.95314 -28.57765 -28.13831 -27.27835 -26.85723 -25.31920 -23.33775 -23.05562 -21.70110 -20.96781 -20.88393 -19.12830 -18.99299 -17.79754 -17.62425 -16.89235 -16.49630 -16.42589 -16.23681 -15.70016 -15.46461 -15.33063 -14.97803 -14.66377 -14.48812 -14.35108 -13.91051 -13.71822 -13.65124 -13.47884 -13.34018 -13.15742 -12.98899 -12.94293 -12.78972 -12.56128 -12.43593 -12.38130 -12.13715 -11.92872 -11.78742 -11.46955 -11.16628 -11.02304 -10.75393 -10.68758 -10.43232 -9.96074 -9.90331 -9.50916 -8.31085 -6.33134 -0.31324 0.37221 0.76946 0.79372 1.25461 1.31161 1.37788 1.38330 1.81777 1.83871 2.28790 2.85480 3.08635 3.17828 3.52688 3.64053 3.80636 3.94606 4.11117 4.13079 4.18140 4.32977 4.34197 4.37484 4.40419 4.50092 4.54196 4.63250 4.68539 4.71489 4.73988 4.81808 4.82790 4.96644 4.99971 5.00882 5.09795 5.12114 5.18255 5.24588 5.33834 5.50042 5.77533 5.95664 6.18761 6.61056 6.67914 6.71530 7.30150 7.77919 8.83835 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.008246 B = 0.005680 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3394.816638 B = 4928.112402 C = 7458.057754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.181 3.819 3 N -0.338 5.338 4 N -0.347 5.347 5 C 0.346 3.654 6 N -0.457 5.457 7 C 0.048 3.952 8 C 0.205 3.795 9 H 0.027 0.973 10 C -0.164 4.164 11 C -0.497 4.497 12 H 0.061 0.939 13 C 0.037 3.963 14 N -0.932 5.932 15 Si 0.909 3.091 16 H -0.256 1.256 17 H -0.284 1.284 18 H -0.264 1.264 19 N -0.465 5.465 20 C 0.112 3.888 21 C -0.119 4.119 22 C -0.035 4.035 23 C 0.048 3.952 24 N -0.490 5.490 25 C 0.025 3.975 26 C -0.257 4.257 27 S 0.085 5.915 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.268 0.732 38 H 0.140 0.860 39 H 0.105 0.895 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.203 0.797 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.815 -5.205 -0.884 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.087 4.087 3 N -0.179 5.179 4 N -0.190 5.190 5 C -0.011 4.011 6 N -0.182 5.182 7 C -0.099 4.099 8 C 0.098 3.902 9 H 0.045 0.955 10 C -0.223 4.223 11 C -0.536 4.536 12 H 0.079 0.921 13 C -0.162 4.162 14 N -0.571 5.571 15 Si 0.733 3.267 16 H -0.181 1.181 17 H -0.210 1.210 18 H -0.189 1.189 19 N -0.158 5.158 20 C -0.010 4.010 21 C -0.159 4.159 22 C -0.076 4.076 23 C -0.230 4.230 24 N -0.205 5.205 25 C -0.125 4.125 26 C -0.396 4.396 27 S 0.339 5.661 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.157 0.843 39 H 0.123 0.877 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.146 0.854 43 H 0.120 0.880 44 H 0.220 0.780 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -19.799 -4.411 -1.228 20.322 hybrid contribution -0.278 -0.430 1.900 1.968 sum -20.077 -4.842 0.673 20.664 Atomic orbital electron populations 1.20445 0.79971 1.06278 1.05118 1.25729 0.98303 0.81744 1.02973 1.73881 0.96814 1.26175 1.21039 1.74575 1.12827 1.09887 1.21721 1.22820 0.87030 0.88392 1.02907 1.59235 1.02547 1.49535 1.06926 1.22264 0.96594 0.99473 0.91558 1.19523 0.92584 0.92963 0.85162 0.95545 1.22523 1.00120 0.98755 1.00933 1.20943 1.11130 1.27020 0.94490 0.92090 1.25413 0.95203 0.94448 1.01165 1.69970 1.22592 1.36568 1.28011 0.86331 0.79704 0.79792 0.80824 1.18076 1.21004 1.18890 1.46559 1.05134 1.09647 1.54460 1.22121 1.04341 0.76478 0.98053 1.21795 1.01341 0.96348 0.96423 1.20224 1.05221 0.94594 0.87514 1.27333 0.91163 1.02021 1.02476 1.66327 1.25090 1.19478 1.09567 1.22275 0.99949 0.99098 0.91193 1.27432 0.95361 1.11251 1.05523 1.84886 1.17017 1.56935 1.07285 0.88752 0.87899 0.87284 0.94834 0.90080 0.91019 0.92632 0.94251 0.94175 0.92300 0.84254 0.87693 0.94278 0.90519 0.85379 0.88016 0.78046 0.78142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.26 71.23 0.73 -0.18 16 2 C 0.18 5.13 8.07 137.64 1.11 6.24 16 3 N -0.34 -12.73 12.18 -49.54 -0.60 -13.33 16 4 N -0.35 -14.57 9.98 -58.00 -0.58 -15.15 16 5 C 0.35 13.35 6.20 260.11 1.61 14.96 16 6 N -0.46 -18.82 4.76 -710.99 -3.38 -22.20 16 7 C 0.05 1.86 8.72 127.69 1.11 2.97 16 8 C 0.20 9.64 1.85 44.17 0.08 9.73 16 9 H 0.03 1.31 5.63 -2.39 -0.01 1.30 16 10 C -0.16 -7.66 7.99 71.98 0.58 -7.08 16 11 C -0.50 -26.66 8.64 25.60 0.22 -26.44 16 12 H 0.06 3.52 6.30 -2.91 -0.02 3.50 16 13 C 0.04 2.06 5.47 84.65 0.46 2.52 16 14 N -0.93 -54.98 13.96 21.45 0.30 -54.68 16 15 Si 0.91 43.07 26.41 68.60 1.81 44.88 16 16 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.26 -12.48 6.11 99.48 0.61 -11.87 16 19 N -0.47 -13.83 2.81 -514.87 -1.45 -15.27 16 20 C 0.11 2.30 5.98 86.38 0.52 2.82 16 21 C -0.12 -2.65 5.52 30.59 0.17 -2.48 16 22 C -0.03 -0.62 5.80 29.85 0.17 -0.45 16 23 C 0.05 1.10 6.64 88.52 0.59 1.69 16 24 N -0.49 -11.41 10.54 -191.44 -2.02 -13.43 16 25 C 0.03 0.49 11.35 83.66 0.95 1.44 16 26 C -0.26 -5.02 11.37 66.78 0.76 -4.26 16 27 S 0.09 2.13 23.18 -56.49 -1.31 0.83 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 0.96 7.37 -2.39 -0.02 0.94 16 31 H 0.03 1.33 6.22 -2.39 -0.01 1.32 16 32 H 0.08 3.29 6.09 -2.38 -0.01 3.28 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.05 2.52 6.13 -2.39 -0.01 2.51 16 35 H 0.04 1.83 6.36 -2.38 -0.02 1.82 16 36 H 0.04 1.90 7.13 -2.39 -0.02 1.88 16 37 H 0.27 14.89 8.31 -92.71 -0.77 14.11 16 38 H 0.14 1.55 7.39 -2.39 -0.02 1.54 16 39 H 0.10 2.33 8.12 -2.39 -0.02 2.31 16 40 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.20 2.61 8.06 -2.91 -0.02 2.59 16 45 H 0.20 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -74.04 376.14 2.74 -71.30 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.91 Total: 15.57 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 9.06 Total: 1.48 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -7.73 Total: -134.06 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.81 Total: 44.88 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.31 Total: 0.83 kcal Total: -74.04 2.74 -71.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411686633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.149 kcal (2) G-P(sol) polarization free energy of solvation -74.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds