Wall clock time and date at job start Tue Mar 31 2020 19:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30301 * 126.34798 * 2 1 4 4 N 1.28521 * 110.05225 * 180.02562 * 3 2 1 5 5 C 1.31212 * 109.86342 * 359.74332 * 4 3 2 6 6 N 1.38586 * 126.47522 * 180.26284 * 5 4 3 7 7 C 1.46903 * 110.99478 * 295.30700 * 6 5 4 8 8 C 1.46897 * 111.00268 * 59.25559 * 6 5 4 9 9 H 1.08996 * 109.47373 * 300.00687 * 8 6 5 10 10 C 1.53004 * 109.46737 * 60.00350 * 8 6 5 11 11 C 1.50699 * 109.46938 * 179.97438 * 8 6 5 12 12 H 1.07995 * 120.00423 * 0.02562 * 11 8 6 13 13 C 1.37884 * 119.99712 * 180.02562 * 11 8 6 14 14 N 1.31518 * 119.99897 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 119.99937 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47162 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47481 * 120.00064 * 15 13 11 18 18 H 1.48498 * 109.47045 * 239.99767 * 15 13 11 19 19 N 1.36449 * 107.05417 * 0.40323 * 5 4 3 20 20 C 1.46498 * 127.13910 * 179.87245 * 19 5 4 21 21 C 1.52998 * 109.47303 * 269.21934 * 20 19 5 22 22 C 1.53006 * 109.46956 * 183.92494 * 21 20 19 23 23 C 1.50707 * 109.46815 * 179.97438 * 22 21 20 24 24 N 1.29026 * 124.91362 * 89.69572 * 23 22 21 25 25 C 1.31781 * 117.12177 * 179.81268 * 24 23 22 26 26 C 1.33648 * 114.49836 * 0.47138 * 25 24 23 27 27 S 1.70977 * 124.91635 * 269.99942 * 23 22 21 28 28 H 1.09006 * 109.46828 * 269.95551 * 1 2 3 29 29 H 1.08994 * 109.47289 * 29.95299 * 1 2 3 30 30 H 1.08996 * 109.47162 * 149.96226 * 1 2 3 31 31 H 1.09000 * 109.47686 * 65.91948 * 7 6 5 32 32 H 1.09007 * 109.47047 * 185.92352 * 7 6 5 33 33 H 1.09005 * 109.47355 * 305.91787 * 7 6 5 34 34 H 1.09006 * 109.46992 * 59.99999 * 10 8 6 35 35 H 1.09002 * 109.47051 * 179.97438 * 10 8 6 36 36 H 1.08995 * 109.47111 * 299.99704 * 10 8 6 37 37 H 0.96997 * 119.99924 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.46981 * 29.21755 * 20 19 5 39 39 H 1.08999 * 109.47166 * 149.20861 * 20 19 5 40 40 H 1.08999 * 109.46588 * 303.92008 * 21 20 19 41 41 H 1.08997 * 109.47438 * 63.92094 * 21 20 19 42 42 H 1.08999 * 109.47076 * 299.99216 * 22 21 20 43 43 H 1.09003 * 109.47239 * 59.99967 * 22 21 20 44 44 H 1.08002 * 122.75186 * 180.22869 * 25 24 23 45 45 H 1.07999 * 126.03256 * 179.72076 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0495 0.0000 4 7 3.5128 0.6889 -0.0005 5 6 3.5945 -0.6207 0.0046 6 7 4.7580 -1.3736 0.0109 7 6 5.5221 -1.1720 -1.2275 8 6 5.5774 -1.0666 1.1908 9 1 5.8448 -0.0100 1.1826 10 6 4.7825 -1.3816 2.4596 11 6 6.8307 -1.9029 1.1633 12 1 7.0017 -2.5931 0.3505 13 6 7.7592 -1.7869 2.1761 14 7 7.5507 -0.9468 3.1663 15 14 9.3131 -2.8230 2.1417 16 1 9.3084 -3.6823 0.9306 17 1 10.5013 -1.9326 2.1129 18 1 9.3648 -3.6781 3.3547 19 7 2.3175 -1.1013 -0.0006 20 6 1.9010 -2.5058 -0.0004 21 6 1.7438 -2.9914 -1.4427 22 6 1.2151 -4.4272 -1.4427 23 6 1.0597 -4.9053 -2.8634 24 7 1.9781 -5.5002 -3.5470 25 6 1.6743 -5.8568 -4.7787 26 6 0.4335 -5.5366 -5.1583 27 16 -0.3567 -4.7313 -3.8051 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8903 -0.5131 30 1 -0.3633 -0.8896 -0.5144 31 1 5.8773 -0.1424 -1.2718 32 1 6.3743 -1.8515 -1.2433 33 1 4.8815 -1.3726 -2.0864 34 1 4.5150 -2.4383 2.4679 35 1 5.3906 -1.1543 3.3352 36 1 3.8757 -0.7771 2.4797 37 1 8.2041 -0.8649 3.8785 38 1 2.6553 -3.1084 0.5057 39 1 0.9489 -2.6024 0.5215 40 1 1.0410 -2.3455 -1.9689 41 1 2.7112 -2.9604 -1.9440 42 1 1.9179 -5.0732 -0.9165 43 1 0.2476 -4.4582 -0.9414 44 1 2.3721 -6.3628 -5.4295 45 1 -0.0067 -5.7357 -6.1242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411686638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:28 Heat of formation + Delta-G solvation = 130.403361 kcal Electronic energy + Delta-G solvation = -26871.607126 eV Core-core repulsion = 23245.853728 eV Total energy + Delta-G solvation = -3625.753398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.47608 -39.93939 -37.00690 -36.29359 -33.46266 -32.98263 -31.39628 -30.18075 -29.31175 -27.53274 -27.05241 -25.39140 -24.50994 -24.24407 -22.40970 -21.69534 -20.36206 -20.19549 -19.41655 -18.29525 -16.74726 -16.33931 -15.97686 -15.72652 -15.43408 -15.18619 -14.85376 -14.57957 -14.13054 -13.92178 -13.75074 -13.54581 -13.14084 -12.89383 -12.73164 -12.60467 -12.29817 -12.28459 -12.02139 -11.82558 -11.76820 -11.13863 -11.11988 -11.02776 -10.90985 -10.75243 -10.32662 -10.26433 -10.09506 -9.97773 -9.92839 -9.76871 -9.66640 -9.16829 -9.06298 -8.51639 -8.36213 -7.69617 -6.06670 -4.13057 0.39744 1.05151 1.43664 2.20198 2.54150 2.71743 3.27894 3.35726 3.37234 3.40193 3.81353 4.33587 4.50935 4.58992 4.59951 4.63539 4.85600 4.92785 4.95220 5.07758 5.14107 5.20644 5.24913 5.26080 5.45779 5.50071 5.68909 5.71249 5.81219 5.85167 5.98506 6.03212 6.22185 6.36821 6.50983 6.63885 6.75326 6.91090 6.96123 7.17522 7.40354 7.47287 7.66900 7.76495 7.92805 8.19222 8.47490 8.91172 9.28884 9.51927 11.00336 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.003386 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.894618 B = 8267.844262 C =10094.438968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.152 3.848 3 N -0.293 5.293 4 N -0.321 5.321 5 C 0.385 3.615 6 N -0.472 5.472 7 C 0.052 3.948 8 C 0.225 3.775 9 H 0.021 0.979 10 C -0.130 4.130 11 C -0.510 4.510 12 H 0.067 0.933 13 C 0.062 3.938 14 N -0.888 5.888 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.470 5.470 20 C 0.116 3.884 21 C -0.125 4.125 22 C -0.042 4.042 23 C 0.060 3.940 24 N -0.470 5.470 25 C 0.042 3.958 26 C -0.264 4.264 27 S 0.113 5.887 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.031 0.969 35 H 0.092 0.908 36 H 0.001 0.999 37 H 0.262 0.738 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.176 0.824 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.189 -9.261 -12.279 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.115 4.115 3 N -0.134 5.134 4 N -0.164 5.164 5 C 0.029 3.971 6 N -0.199 5.199 7 C -0.095 4.095 8 C 0.121 3.879 9 H 0.039 0.961 10 C -0.188 4.188 11 C -0.549 4.549 12 H 0.085 0.915 13 C -0.140 4.140 14 N -0.527 5.527 15 Si 0.728 3.272 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.164 5.164 20 C -0.007 4.007 21 C -0.165 4.165 22 C -0.083 4.083 23 C -0.218 4.218 24 N -0.184 5.184 25 C -0.109 4.109 26 C -0.403 4.403 27 S 0.366 5.634 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.110 0.890 36 H 0.020 0.980 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.108 0.892 44 H 0.193 0.807 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -19.255 -7.918 -11.671 23.867 hybrid contribution 1.302 -1.670 -0.654 2.216 sum -17.952 -9.588 -12.325 23.793 Atomic orbital electron populations 1.20087 0.84416 1.03763 1.03451 1.24625 0.96285 0.83058 1.07539 1.73940 0.96989 1.24362 1.18089 1.74686 1.11285 1.09099 1.21289 1.22834 0.86247 0.88285 0.99752 1.59261 1.02895 1.51099 1.06665 1.22180 0.97619 1.01300 0.88421 1.19421 0.89538 0.96494 0.82492 0.96135 1.21803 0.97027 0.97868 1.02092 1.21099 1.02250 1.23056 1.08451 0.91462 1.24919 0.98375 0.95468 0.95240 1.69912 1.35571 1.35939 1.11239 0.86407 0.82756 0.80019 0.78037 1.19626 1.21005 1.21006 1.46340 1.06594 1.07707 1.55790 1.21728 1.02430 0.79142 0.97443 1.21910 1.03370 0.94373 0.96856 1.20210 1.03476 0.96766 0.87863 1.27080 0.92300 1.00772 1.01682 1.66293 1.32377 1.13147 1.06572 1.21876 0.95349 1.01489 0.92203 1.27087 0.99424 1.09349 1.04446 1.84010 1.18763 1.54722 1.05894 0.90157 0.89180 0.90995 0.94693 0.89237 0.93982 0.94952 0.88979 0.97994 0.92809 0.87283 0.89267 0.91337 0.89809 0.87744 0.89229 0.80678 0.80611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.10 36.01 0.36 -0.21 16 2 C 0.15 2.46 8.07 -154.01 -1.24 1.21 16 3 N -0.29 -6.02 12.18 32.99 0.40 -5.62 16 4 N -0.32 -7.41 12.13 30.31 0.37 -7.04 16 5 C 0.38 8.04 5.03 -318.88 -1.60 6.43 16 6 N -0.47 -10.33 4.66 -176.08 -0.82 -11.15 16 7 C 0.05 1.06 9.14 60.07 0.55 1.61 16 8 C 0.22 5.76 2.00 -68.86 -0.14 5.62 16 9 H 0.02 0.61 8.08 -51.93 -0.42 0.19 16 10 C -0.13 -3.24 8.84 37.16 0.33 -2.91 16 11 C -0.51 -13.61 7.95 -34.44 -0.27 -13.88 16 12 H 0.07 1.75 6.40 -52.49 -0.34 1.42 16 13 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 14 N -0.89 -25.25 11.32 55.43 0.63 -24.62 16 15 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 N -0.47 -7.76 2.81 -114.09 -0.32 -8.08 16 20 C 0.12 1.39 5.88 -4.04 -0.02 1.36 16 21 C -0.13 -1.30 5.52 -26.73 -0.15 -1.45 16 22 C -0.04 -0.35 5.80 -27.88 -0.16 -0.51 16 23 C 0.06 0.60 6.64 -13.45 -0.09 0.51 16 24 N -0.47 -5.57 10.54 -11.86 -0.13 -5.69 16 25 C 0.04 0.40 11.35 -19.18 -0.22 0.18 16 26 C -0.26 -2.04 11.37 29.12 0.33 -1.71 16 27 S 0.11 0.88 23.18 -107.50 -2.49 -1.61 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.52 7.95 -51.93 -0.41 0.11 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.81 6.31 -51.92 -0.33 1.48 16 33 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 2.52 6.07 -51.93 -0.31 2.20 16 36 H 0.00 0.03 7.22 -51.93 -0.38 -0.35 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.09 0.77 7.92 -51.93 -0.41 0.36 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.18 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -33.98 386.41 -10.78 -44.76 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.80 Total: -0.52 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.42 Total: -2.16 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: 0.13 Total: -62.21 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.49 Total: -1.61 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.98 -10.78 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411686638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.161 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds