Wall clock time and date at job start Tue Mar 31 2020 19:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30301 * 126.34798 * 2 1 4 4 N 1.28521 * 110.05225 * 180.02562 * 3 2 1 5 5 C 1.31212 * 109.86342 * 359.74332 * 4 3 2 6 6 N 1.38586 * 126.47522 * 180.26284 * 5 4 3 7 7 C 1.46903 * 110.99478 * 295.30700 * 6 5 4 8 8 C 1.46897 * 111.00268 * 59.25559 * 6 5 4 9 9 H 1.08996 * 109.47373 * 300.00687 * 8 6 5 10 10 C 1.53004 * 109.46737 * 60.00350 * 8 6 5 11 11 C 1.50699 * 109.46938 * 179.97438 * 8 6 5 12 12 H 1.07995 * 120.00423 * 0.02562 * 11 8 6 13 13 C 1.37884 * 119.99712 * 180.02562 * 11 8 6 14 14 N 1.31518 * 119.99897 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 119.99937 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47162 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47481 * 120.00064 * 15 13 11 18 18 H 1.48498 * 109.47045 * 239.99767 * 15 13 11 19 19 N 1.36449 * 107.05417 * 0.40323 * 5 4 3 20 20 C 1.46498 * 127.13910 * 179.87245 * 19 5 4 21 21 C 1.52998 * 109.47303 * 269.21934 * 20 19 5 22 22 C 1.53006 * 109.46956 * 183.92494 * 21 20 19 23 23 C 1.50707 * 109.46815 * 179.97438 * 22 21 20 24 24 N 1.29026 * 124.91362 * 89.69572 * 23 22 21 25 25 C 1.31781 * 117.12177 * 179.81268 * 24 23 22 26 26 C 1.33648 * 114.49836 * 0.47138 * 25 24 23 27 27 S 1.70977 * 124.91635 * 269.99942 * 23 22 21 28 28 H 1.09006 * 109.46828 * 269.95551 * 1 2 3 29 29 H 1.08994 * 109.47289 * 29.95299 * 1 2 3 30 30 H 1.08996 * 109.47162 * 149.96226 * 1 2 3 31 31 H 1.09000 * 109.47686 * 65.91948 * 7 6 5 32 32 H 1.09007 * 109.47047 * 185.92352 * 7 6 5 33 33 H 1.09005 * 109.47355 * 305.91787 * 7 6 5 34 34 H 1.09006 * 109.46992 * 59.99999 * 10 8 6 35 35 H 1.09002 * 109.47051 * 179.97438 * 10 8 6 36 36 H 1.08995 * 109.47111 * 299.99704 * 10 8 6 37 37 H 0.96997 * 119.99924 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.46981 * 29.21755 * 20 19 5 39 39 H 1.08999 * 109.47166 * 149.20861 * 20 19 5 40 40 H 1.08999 * 109.46588 * 303.92008 * 21 20 19 41 41 H 1.08997 * 109.47438 * 63.92094 * 21 20 19 42 42 H 1.08999 * 109.47076 * 299.99216 * 22 21 20 43 43 H 1.09003 * 109.47239 * 59.99967 * 22 21 20 44 44 H 1.08002 * 122.75186 * 180.22869 * 25 24 23 45 45 H 1.07999 * 126.03256 * 179.72076 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0495 0.0000 4 7 3.5128 0.6889 -0.0005 5 6 3.5945 -0.6207 0.0046 6 7 4.7580 -1.3736 0.0109 7 6 5.5221 -1.1720 -1.2275 8 6 5.5774 -1.0666 1.1908 9 1 5.8448 -0.0100 1.1826 10 6 4.7825 -1.3816 2.4596 11 6 6.8307 -1.9029 1.1633 12 1 7.0017 -2.5931 0.3505 13 6 7.7592 -1.7869 2.1761 14 7 7.5507 -0.9468 3.1663 15 14 9.3131 -2.8230 2.1417 16 1 9.3084 -3.6823 0.9306 17 1 10.5013 -1.9326 2.1129 18 1 9.3648 -3.6781 3.3547 19 7 2.3175 -1.1013 -0.0006 20 6 1.9010 -2.5058 -0.0004 21 6 1.7438 -2.9914 -1.4427 22 6 1.2151 -4.4272 -1.4427 23 6 1.0597 -4.9053 -2.8634 24 7 1.9781 -5.5002 -3.5470 25 6 1.6743 -5.8568 -4.7787 26 6 0.4335 -5.5366 -5.1583 27 16 -0.3567 -4.7313 -3.8051 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8903 -0.5131 30 1 -0.3633 -0.8896 -0.5144 31 1 5.8773 -0.1424 -1.2718 32 1 6.3743 -1.8515 -1.2433 33 1 4.8815 -1.3726 -2.0864 34 1 4.5150 -2.4383 2.4679 35 1 5.3906 -1.1543 3.3352 36 1 3.8757 -0.7771 2.4797 37 1 8.2041 -0.8649 3.8785 38 1 2.6553 -3.1084 0.5057 39 1 0.9489 -2.6024 0.5215 40 1 1.0410 -2.3455 -1.9689 41 1 2.7112 -2.9604 -1.9440 42 1 1.9179 -5.0732 -0.9165 43 1 0.2476 -4.4582 -0.9414 44 1 2.3721 -6.3628 -5.4295 45 1 -0.0067 -5.7357 -6.1242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411686638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:27 Heat of formation + Delta-G solvation = 109.678773 kcal Electronic energy + Delta-G solvation = -26872.505812 eV Core-core repulsion = 23245.853728 eV Total energy + Delta-G solvation = -3626.652083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.91462 -40.60909 -38.80248 -37.30905 -34.96184 -34.46680 -32.63956 -31.29757 -30.97305 -28.70766 -28.10098 -27.28569 -26.11075 -25.24146 -23.59692 -23.11912 -21.60875 -21.10131 -20.83239 -18.98756 -18.48685 -17.92007 -17.39409 -16.86934 -16.49786 -16.41695 -16.09264 -15.69284 -15.53564 -15.26105 -14.79815 -14.67660 -14.28402 -14.23043 -13.85336 -13.75251 -13.46712 -13.39575 -13.12095 -13.03187 -12.86264 -12.81293 -12.69666 -12.44386 -12.41937 -12.23378 -12.20597 -12.05886 -11.89028 -11.46818 -11.08997 -11.03275 -10.59334 -10.55836 -10.34208 -9.86874 -9.79481 -9.54158 -8.15447 -6.29537 -0.23559 0.45453 0.80945 0.82435 1.38714 1.43773 1.46023 1.57835 1.87722 1.89793 2.41399 3.00503 3.15597 3.21190 3.55450 3.68353 3.81989 4.01116 4.13986 4.17975 4.28601 4.34354 4.41577 4.44739 4.51298 4.58151 4.61327 4.71409 4.74451 4.75816 4.83040 4.85757 4.90977 4.98327 5.03866 5.08598 5.15071 5.22992 5.26363 5.36824 5.59323 5.65866 5.92491 5.99750 6.14784 6.64637 6.81402 6.83881 7.39755 7.81600 8.91994 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.003386 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.894618 B = 8267.844262 C =10094.438968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.179 3.821 3 N -0.341 5.341 4 N -0.368 5.368 5 C 0.361 3.639 6 N -0.463 5.463 7 C 0.058 3.942 8 C 0.235 3.765 9 H -0.032 1.032 10 C -0.109 4.109 11 C -0.521 4.521 12 H 0.072 0.928 13 C 0.013 3.987 14 N -0.921 5.921 15 Si 0.968 3.032 16 H -0.261 1.261 17 H -0.284 1.284 18 H -0.278 1.278 19 N -0.464 5.464 20 C 0.109 3.891 21 C -0.111 4.111 22 C -0.036 4.036 23 C 0.036 3.964 24 N -0.511 5.511 25 C 0.015 3.985 26 C -0.258 4.258 27 S 0.155 5.845 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.014 0.986 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.000 1.000 37 H 0.263 0.737 38 H 0.092 0.908 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.095 0.905 43 H 0.126 0.874 44 H 0.187 0.813 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.115 -11.259 -13.221 28.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.089 4.089 3 N -0.182 5.182 4 N -0.211 5.211 5 C 0.003 3.997 6 N -0.189 5.189 7 C -0.089 4.089 8 C 0.130 3.870 9 H -0.014 1.014 10 C -0.168 4.168 11 C -0.559 4.559 12 H 0.090 0.910 13 C -0.186 4.186 14 N -0.560 5.560 15 Si 0.793 3.207 16 H -0.185 1.185 17 H -0.210 1.210 18 H -0.204 1.204 19 N -0.157 5.157 20 C -0.013 4.013 21 C -0.151 4.151 22 C -0.078 4.078 23 C -0.242 4.242 24 N -0.227 5.227 25 C -0.135 4.135 26 C -0.397 4.397 27 S 0.408 5.592 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.129 0.871 31 H 0.032 0.968 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.019 0.981 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.154 0.846 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.113 0.887 43 H 0.144 0.856 44 H 0.204 0.796 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -22.212 -9.934 -12.631 27.415 hybrid contribution 2.041 -1.017 -0.438 2.322 sum -20.171 -10.951 -13.068 26.412 Atomic orbital electron populations 1.20482 0.79475 1.06247 1.05568 1.25848 0.98462 0.81696 1.02936 1.73846 0.96613 1.26516 1.21194 1.74541 1.13281 1.10715 1.22513 1.22682 0.87191 0.88097 1.01747 1.59165 1.03001 1.50986 1.05752 1.22139 0.98013 0.99906 0.88865 1.19077 0.90289 0.93253 0.84424 1.01400 1.21537 0.96212 0.98274 1.00741 1.21356 1.02902 1.23070 1.08619 0.91003 1.25771 1.01512 0.96515 0.94780 1.70057 1.36699 1.37364 1.11920 0.85345 0.78512 0.78380 0.78434 1.18530 1.20986 1.20403 1.46557 1.04903 1.09615 1.54629 1.22122 1.03970 0.76273 0.98887 1.21737 1.01906 0.96051 0.95362 1.20228 1.05041 0.94834 0.87663 1.27288 0.93263 1.01230 1.02380 1.66289 1.34104 1.14432 1.07863 1.22147 0.96622 1.02668 0.92066 1.27491 0.98820 1.07854 1.05557 1.83776 1.16828 1.53667 1.04887 0.87992 0.88100 0.87131 0.96771 0.89339 0.91710 0.93827 0.91507 0.98132 0.92741 0.88987 0.84570 0.90099 0.93431 0.88707 0.85572 0.79616 0.77911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.10 71.24 0.72 -0.19 16 2 C 0.18 5.44 8.07 137.64 1.11 6.55 16 3 N -0.34 -14.16 12.18 -49.54 -0.60 -14.77 16 4 N -0.37 -17.65 12.13 -58.01 -0.70 -18.36 16 5 C 0.36 15.40 5.03 260.11 1.31 16.71 16 6 N -0.46 -20.92 4.66 -710.98 -3.31 -24.24 16 7 C 0.06 2.46 9.14 127.69 1.17 3.63 16 8 C 0.24 12.60 2.00 44.17 0.09 12.68 16 9 H -0.03 -2.00 8.08 -2.39 -0.02 -2.02 16 10 C -0.11 -5.64 8.84 71.98 0.64 -5.00 16 11 C -0.52 -28.50 7.95 25.60 0.20 -28.30 16 12 H 0.07 3.79 6.40 -2.91 -0.02 3.77 16 13 C 0.01 0.74 5.30 84.66 0.45 1.19 16 14 N -0.92 -53.95 11.32 21.45 0.24 -53.70 16 15 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 16 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 19 N -0.46 -14.75 2.81 -514.86 -1.45 -16.19 16 20 C 0.11 2.33 5.88 86.38 0.51 2.84 16 21 C -0.11 -2.07 5.52 30.60 0.17 -1.90 16 22 C -0.04 -0.52 5.80 29.85 0.17 -0.35 16 23 C 0.04 0.64 6.64 88.52 0.59 1.23 16 24 N -0.51 -11.75 10.54 -191.43 -2.02 -13.77 16 25 C 0.02 0.27 11.35 83.66 0.95 1.22 16 26 C -0.26 -3.35 11.37 66.78 0.76 -2.59 16 27 S 0.15 1.95 23.18 -56.49 -1.31 0.64 16 28 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.11 0.91 7.95 -2.39 -0.02 0.89 16 31 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 3.68 6.31 -2.38 -0.02 3.67 16 33 H 0.06 2.39 8.10 -2.38 -0.02 2.37 16 34 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 36 H 0.00 -0.02 7.22 -2.39 -0.02 -0.03 16 37 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.14 1.65 7.92 -2.39 -0.02 1.64 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.19 2.56 8.06 -2.91 -0.02 2.53 16 45 H 0.20 1.33 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -79.59 386.41 2.69 -76.89 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.99 Total: 10.42 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 8.83 Total: 7.72 kcal Atomic # 7 Polarization: -133.18 SS G_CDS: -7.84 Total: -141.02 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.31 Total: 0.64 kcal Total: -79.59 2.69 -76.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411686638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.573 kcal (2) G-P(sol) polarization free energy of solvation -79.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds