Wall clock time and date at job start Tue Mar 31 2020 19:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29025 * 124.91322 * 2 1 4 4 C 1.31782 * 117.12569 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75050 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47315 * 305.01899 * 5 4 3 7 7 N 1.46500 * 109.47431 * 175.70103 * 6 5 4 8 8 C 1.36731 * 127.13653 * 273.40486 * 7 6 5 9 9 C 1.50700 * 126.35078 * 359.96072 * 8 7 6 10 10 N 1.30290 * 107.30649 * 180.22387 * 8 7 6 11 11 N 1.28530 * 110.05218 * 359.77372 * 10 8 7 12 12 C 1.31216 * 109.86021 * 359.97438 * 11 10 8 13 13 N 1.38580 * 126.47616 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99622 * 57.38845 * 13 12 11 15 15 C 1.46903 * 110.99950 * 293.43845 * 13 12 11 16 16 H 1.08997 * 109.47180 * 309.99388 * 15 13 12 17 17 C 1.52998 * 109.46920 * 70.00004 * 15 13 12 18 18 C 1.50699 * 109.46643 * 189.99616 * 15 13 12 19 19 H 1.08002 * 120.00714 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99561 * 180.02562 * 18 15 13 21 21 N 1.31509 * 120.00388 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 119.99720 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47137 * 59.99894 * 22 20 18 24 24 H 1.48509 * 109.46944 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47141 * 299.99762 * 22 20 18 26 26 C 1.33638 * 114.49983 * 0.23030 * 4 3 2 27 27 S 1.70967 * 124.91782 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46880 * 90.00175 * 1 2 3 29 29 H 1.08995 * 109.46965 * 210.00390 * 1 2 3 30 30 H 1.09002 * 109.47216 * 330.00559 * 1 2 3 31 31 H 1.09000 * 109.46808 * 185.02452 * 5 4 3 32 32 H 1.08996 * 109.47456 * 65.02869 * 5 4 3 33 33 H 1.09004 * 109.46438 * 55.70065 * 6 5 4 34 34 H 1.08998 * 109.47367 * 295.70489 * 6 5 4 35 35 H 1.08999 * 109.47654 * 270.29009 * 9 8 7 36 36 H 1.09002 * 109.47090 * 30.28820 * 9 8 7 37 37 H 1.09000 * 109.47785 * 150.28718 * 9 8 7 38 38 H 1.09001 * 109.47739 * 302.74365 * 14 13 12 39 39 H 1.09000 * 109.46887 * 62.74547 * 14 13 12 40 40 H 1.08997 * 109.47170 * 182.74243 * 14 13 12 41 41 H 1.08997 * 109.47696 * 59.99701 * 17 15 13 42 42 H 1.09000 * 109.46930 * 299.99436 * 17 15 13 43 43 H 1.09005 * 109.46878 * 179.97438 * 17 15 13 44 44 H 0.96999 * 120.00230 * 180.02562 * 21 20 18 45 45 H 1.07997 * 126.04145 * 179.77149 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8795 0.0005 5 6 4.5306 2.0247 0.0000 6 6 4.2334 2.9495 -1.1820 7 7 5.1182 4.1158 -1.1243 8 6 4.9065 5.2793 -0.4380 9 6 3.7061 5.6098 0.4110 10 7 5.9325 6.0515 -0.6586 11 7 6.7737 5.4577 -1.4279 12 6 6.3260 4.2648 -1.7414 13 7 6.9575 3.3346 -2.5516 14 6 8.2931 3.0071 -2.0350 15 6 7.0318 3.8097 -3.9396 16 1 6.0463 4.1460 -4.2618 17 6 8.0219 4.9728 -4.0282 18 6 7.4955 2.6864 -4.8308 19 1 7.7128 1.7164 -4.4085 20 6 7.6423 2.8970 -6.1855 21 7 7.3772 4.0779 -6.7000 22 14 8.2163 1.5044 -7.2903 23 1 7.2547 0.3761 -7.2048 24 1 8.2916 1.9848 -8.6936 25 1 9.5585 1.0453 -6.8511 26 6 3.9355 -0.4005 -0.0039 27 16 2.4856 -1.4019 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 5.5448 1.6354 -0.0894 32 1 4.4368 2.5835 0.9312 33 1 3.1952 3.2783 -1.1340 34 1 4.4014 2.4119 -2.1152 35 1 2.9434 6.0838 -0.2069 36 1 3.3047 4.6940 0.8449 37 1 4.0018 6.2908 1.2091 38 1 8.8854 3.9187 -1.9551 39 1 8.1994 2.5473 -1.0512 40 1 8.7855 2.3124 -2.7153 41 1 9.0073 4.6365 -3.7060 42 1 7.6865 5.7853 -3.3835 43 1 8.0774 5.3251 -5.0582 44 1 7.4802 4.2260 -7.6531 45 1 4.9545 -0.7579 -0.0078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417467472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:00 Heat of formation + Delta-G solvation = 134.364737 kcal Electronic energy + Delta-G solvation = -27012.494582 eV Core-core repulsion = 23386.912963 eV Total energy + Delta-G solvation = -3625.581620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.45367 -40.17093 -37.19927 -35.57897 -33.05177 -32.92576 -31.39559 -30.18752 -28.75154 -28.34339 -27.02610 -25.35485 -25.04600 -24.70571 -22.69422 -21.40009 -20.37848 -19.93221 -19.39728 -17.78445 -16.64088 -16.38255 -15.75542 -15.62037 -15.26326 -15.14157 -14.61599 -14.48734 -13.97676 -13.71278 -13.63495 -13.49960 -13.10961 -13.00843 -12.72170 -12.52540 -12.46992 -12.30139 -12.25332 -11.78976 -11.45600 -11.35130 -11.24694 -11.05385 -10.91091 -10.75328 -10.51991 -10.17298 -10.11869 -9.92225 -9.86180 -9.69938 -9.63050 -8.90774 -8.89378 -8.44251 -8.35523 -7.69803 -6.05922 -4.12411 0.47578 1.11494 1.48132 2.21183 2.50721 2.78111 3.28613 3.33647 3.34753 3.39314 3.77820 4.33351 4.57052 4.66561 4.68905 4.80096 4.90687 4.99701 5.04707 5.11641 5.15243 5.25619 5.31556 5.37709 5.52260 5.54511 5.63143 5.73493 5.82719 5.88835 6.01655 6.03059 6.26101 6.37962 6.54488 6.61498 6.84999 7.09110 7.09576 7.21361 7.49581 7.54351 7.66772 7.77178 7.96615 8.27596 8.48772 8.90657 9.31160 9.52191 11.00715 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.003848 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.395236 B = 7274.202677 C = 9343.500228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.049 3.951 3 N -0.470 5.470 4 C 0.076 3.924 5 C -0.053 4.053 6 C 0.124 3.876 7 N -0.470 5.470 8 C 0.157 3.843 9 C -0.059 4.059 10 N -0.296 5.296 11 N -0.315 5.315 12 C 0.375 3.625 13 N -0.470 5.470 14 C 0.047 3.953 15 C 0.226 3.774 16 H 0.034 0.966 17 C -0.174 4.174 18 C -0.507 4.507 19 H 0.064 0.936 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.248 4.248 27 S 0.116 5.884 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.031 0.969 42 H 0.036 0.964 43 H 0.086 0.914 44 H 0.263 0.737 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.131 -9.817 15.831 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.229 4.229 3 N -0.185 5.185 4 C -0.056 4.056 5 C -0.094 4.094 6 C 0.000 4.000 7 N -0.164 5.164 8 C -0.110 4.110 9 C -0.118 4.118 10 N -0.137 5.137 11 N -0.157 5.157 12 C 0.019 3.981 13 N -0.196 5.196 14 C -0.101 4.101 15 C 0.122 3.878 16 H 0.052 0.948 17 C -0.234 4.234 18 C -0.546 4.546 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.527 5.527 22 Si 0.728 3.272 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.387 4.387 27 S 0.370 5.630 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.106 0.894 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.104 0.896 44 H 0.073 0.927 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.984 -9.527 15.689 22.483 hybrid contribution 0.589 -0.599 -0.912 1.240 sum -12.395 -10.125 14.777 21.783 Atomic orbital electron populations 1.20451 0.85097 1.04160 1.04079 1.27022 1.01778 0.90975 1.03148 1.66048 1.04385 1.31719 1.16380 1.19952 0.89835 0.93862 1.01960 1.20470 0.96941 0.92801 0.99216 1.21659 0.93364 0.84567 1.00397 1.46371 1.17580 1.14740 1.37704 1.24638 1.00562 0.84769 1.01068 1.20105 0.91436 1.02586 0.97704 1.73947 1.00431 1.25491 1.13861 1.74720 1.23250 1.04088 1.13680 1.22925 0.86043 0.92362 0.96783 1.59418 1.20278 1.36454 1.03485 1.22221 0.88299 1.00918 0.98655 1.19373 0.96121 0.93675 0.78667 0.94793 1.22447 0.98730 0.98698 1.03489 1.20952 1.45512 0.96588 0.91520 0.91770 1.24907 0.95372 0.95774 0.97931 1.69900 1.48524 1.21507 1.12748 0.86535 0.79243 0.82033 0.79425 1.20282 1.21298 1.20172 1.26873 1.03397 0.95646 1.12788 1.83978 0.97883 1.12754 1.68394 0.89415 0.90147 0.89212 0.89046 0.89813 0.88614 0.87610 0.90183 0.90752 0.89223 0.94080 0.93878 0.89393 0.94979 0.94503 0.89569 0.92744 0.80299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.46 36.01 0.38 -0.09 16 2 C 0.05 0.46 7.39 -13.46 -0.10 0.36 16 3 N -0.47 -5.47 10.26 -8.06 -0.08 -5.55 16 4 C 0.08 0.88 6.08 -84.23 -0.51 0.37 16 5 C -0.05 -0.64 6.03 -27.88 -0.17 -0.81 16 6 C 0.12 1.78 5.80 -4.04 -0.02 1.76 16 7 N -0.47 -8.26 2.81 -114.09 -0.32 -8.58 16 8 C 0.16 2.66 8.07 -154.03 -1.24 1.42 16 9 C -0.06 -0.67 10.15 36.01 0.37 -0.31 16 10 N -0.30 -6.15 12.18 32.99 0.40 -5.75 16 11 N -0.31 -7.15 9.89 30.31 0.30 -6.85 16 12 C 0.37 7.93 6.26 -318.88 -2.00 5.93 16 13 N -0.47 -10.28 4.73 -176.08 -0.83 -11.12 16 14 C 0.05 0.93 8.57 60.06 0.51 1.44 16 15 C 0.23 5.80 2.28 -68.86 -0.16 5.64 16 16 H 0.03 0.98 8.05 -51.93 -0.42 0.57 16 17 C -0.17 -4.51 8.16 37.16 0.30 -4.20 16 18 C -0.51 -13.52 7.87 -34.44 -0.27 -13.80 16 19 H 0.06 1.67 7.15 -52.49 -0.38 1.29 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.89 -25.32 11.32 55.43 0.63 -24.69 16 22 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.25 -2.55 11.07 29.12 0.32 -2.23 16 27 S 0.12 1.00 23.18 -107.50 -2.49 -1.49 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.13 8.03 -51.93 -0.42 0.71 16 32 H 0.08 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.10 1.26 7.84 -51.93 -0.41 0.85 16 34 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.71 7.97 -51.93 -0.41 0.30 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.85 6.48 -51.93 -0.34 0.52 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.76 6.70 -51.93 -0.35 1.41 16 41 H 0.03 0.79 6.48 -51.93 -0.34 0.45 16 42 H 0.04 0.95 6.00 -51.93 -0.31 0.63 16 43 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -32.63 380.99 -10.98 -43.61 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.62 Total: 1.71 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.68 Total: -2.91 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 0.09 Total: -62.54 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.49 Total: -1.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.63 -10.98 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417467472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.977 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds