Wall clock time and date at job start Tue Mar 31 2020 19:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29025 * 124.91322 * 2 1 4 4 C 1.31782 * 117.12569 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75050 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47315 * 305.01899 * 5 4 3 7 7 N 1.46500 * 109.47431 * 175.70103 * 6 5 4 8 8 C 1.36731 * 127.13653 * 273.40486 * 7 6 5 9 9 C 1.50700 * 126.35078 * 359.96072 * 8 7 6 10 10 N 1.30290 * 107.30649 * 180.22387 * 8 7 6 11 11 N 1.28530 * 110.05218 * 359.77372 * 10 8 7 12 12 C 1.31216 * 109.86021 * 359.97438 * 11 10 8 13 13 N 1.38580 * 126.47616 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99622 * 57.38845 * 13 12 11 15 15 C 1.46903 * 110.99950 * 293.43845 * 13 12 11 16 16 H 1.08997 * 109.47180 * 309.99388 * 15 13 12 17 17 C 1.52998 * 109.46920 * 70.00004 * 15 13 12 18 18 C 1.50699 * 109.46643 * 189.99616 * 15 13 12 19 19 H 1.08002 * 120.00714 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99561 * 180.02562 * 18 15 13 21 21 N 1.31509 * 120.00388 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 119.99720 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47137 * 59.99894 * 22 20 18 24 24 H 1.48509 * 109.46944 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47141 * 299.99762 * 22 20 18 26 26 C 1.33638 * 114.49983 * 0.23030 * 4 3 2 27 27 S 1.70967 * 124.91782 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46880 * 90.00175 * 1 2 3 29 29 H 1.08995 * 109.46965 * 210.00390 * 1 2 3 30 30 H 1.09002 * 109.47216 * 330.00559 * 1 2 3 31 31 H 1.09000 * 109.46808 * 185.02452 * 5 4 3 32 32 H 1.08996 * 109.47456 * 65.02869 * 5 4 3 33 33 H 1.09004 * 109.46438 * 55.70065 * 6 5 4 34 34 H 1.08998 * 109.47367 * 295.70489 * 6 5 4 35 35 H 1.08999 * 109.47654 * 270.29009 * 9 8 7 36 36 H 1.09002 * 109.47090 * 30.28820 * 9 8 7 37 37 H 1.09000 * 109.47785 * 150.28718 * 9 8 7 38 38 H 1.09001 * 109.47739 * 302.74365 * 14 13 12 39 39 H 1.09000 * 109.46887 * 62.74547 * 14 13 12 40 40 H 1.08997 * 109.47170 * 182.74243 * 14 13 12 41 41 H 1.08997 * 109.47696 * 59.99701 * 17 15 13 42 42 H 1.09000 * 109.46930 * 299.99436 * 17 15 13 43 43 H 1.09005 * 109.46878 * 179.97438 * 17 15 13 44 44 H 0.96999 * 120.00230 * 180.02562 * 21 20 18 45 45 H 1.07997 * 126.04145 * 179.77149 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8795 0.0005 5 6 4.5306 2.0247 0.0000 6 6 4.2334 2.9495 -1.1820 7 7 5.1182 4.1158 -1.1243 8 6 4.9065 5.2793 -0.4380 9 6 3.7061 5.6098 0.4110 10 7 5.9325 6.0515 -0.6586 11 7 6.7737 5.4577 -1.4279 12 6 6.3260 4.2648 -1.7414 13 7 6.9575 3.3346 -2.5516 14 6 8.2931 3.0071 -2.0350 15 6 7.0318 3.8097 -3.9396 16 1 6.0463 4.1460 -4.2618 17 6 8.0219 4.9728 -4.0282 18 6 7.4955 2.6864 -4.8308 19 1 7.7128 1.7164 -4.4085 20 6 7.6423 2.8970 -6.1855 21 7 7.3772 4.0779 -6.7000 22 14 8.2163 1.5044 -7.2903 23 1 7.2547 0.3761 -7.2048 24 1 8.2916 1.9848 -8.6936 25 1 9.5585 1.0453 -6.8511 26 6 3.9355 -0.4005 -0.0039 27 16 2.4856 -1.4019 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 5.5448 1.6354 -0.0894 32 1 4.4368 2.5835 0.9312 33 1 3.1952 3.2783 -1.1340 34 1 4.4014 2.4119 -2.1152 35 1 2.9434 6.0838 -0.2069 36 1 3.3047 4.6940 0.8449 37 1 4.0018 6.2908 1.2091 38 1 8.8854 3.9187 -1.9551 39 1 8.1994 2.5473 -1.0512 40 1 8.7855 2.3124 -2.7153 41 1 9.0073 4.6365 -3.7060 42 1 7.6865 5.7853 -3.3835 43 1 8.0774 5.3251 -5.0582 44 1 7.4802 4.2260 -7.6531 45 1 4.9545 -0.7579 -0.0078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417467472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:59 Heat of formation + Delta-G solvation = 116.279344 kcal Electronic energy + Delta-G solvation = -27013.278824 eV Core-core repulsion = 23386.912963 eV Total energy + Delta-G solvation = -3626.365861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.95661 -40.94892 -39.00808 -36.81829 -34.91190 -33.92741 -32.73022 -31.20123 -30.61778 -29.12057 -28.42285 -27.30139 -26.83525 -25.79906 -23.55495 -23.12502 -21.76925 -21.09038 -20.68027 -18.59741 -18.39025 -17.96575 -17.35634 -17.09910 -16.45535 -16.25054 -15.94827 -15.64079 -15.38081 -14.91076 -14.81887 -14.61787 -14.27499 -14.17172 -13.88802 -13.64692 -13.50695 -13.35143 -13.22398 -13.05238 -12.98806 -12.93122 -12.70310 -12.65301 -12.57484 -12.39480 -12.23697 -12.06605 -12.03332 -11.49752 -11.15649 -10.93268 -10.62191 -10.53029 -10.35992 -9.91628 -9.64611 -9.47947 -8.14269 -6.28475 -0.25239 0.42308 0.71864 0.79433 1.33538 1.44867 1.46538 1.54320 1.75823 1.83282 2.41351 3.01121 3.11343 3.15843 3.49054 3.62120 3.81586 3.92811 4.11172 4.17620 4.29409 4.30950 4.39544 4.50791 4.59214 4.64995 4.67624 4.70793 4.71304 4.72132 4.80375 4.94863 4.97042 5.02100 5.06230 5.07197 5.10791 5.16409 5.26555 5.40948 5.61568 5.65125 5.85543 6.03760 6.19945 6.63021 6.74919 6.81088 7.40690 7.77326 8.92465 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.003848 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.395236 B = 7274.202677 C = 9343.500228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.041 3.959 3 N -0.496 5.496 4 C 0.060 3.940 5 C -0.040 4.040 6 C 0.128 3.872 7 N -0.466 5.466 8 C 0.179 3.821 9 C -0.058 4.058 10 N -0.336 5.336 11 N -0.348 5.348 12 C 0.352 3.648 13 N -0.465 5.465 14 C 0.051 3.949 15 C 0.238 3.762 16 H -0.009 1.009 17 C -0.157 4.157 18 C -0.517 4.517 19 H 0.071 0.929 20 C 0.013 3.987 21 N -0.922 5.922 22 Si 0.968 3.032 23 H -0.269 1.269 24 H -0.288 1.288 25 H -0.266 1.266 26 C -0.263 4.263 27 S 0.153 5.847 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.030 0.970 43 H 0.060 0.940 44 H 0.263 0.737 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.621 -11.954 17.198 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.236 4.236 3 N -0.212 5.212 4 C -0.072 4.072 5 C -0.081 4.081 6 C 0.005 3.995 7 N -0.160 5.160 8 C -0.089 4.089 9 C -0.116 4.116 10 N -0.177 5.177 11 N -0.190 5.190 12 C -0.005 4.005 13 N -0.190 5.190 14 C -0.096 4.096 15 C 0.132 3.868 16 H 0.009 0.991 17 C -0.216 4.216 18 C -0.555 4.555 19 H 0.089 0.911 20 C -0.186 4.186 21 N -0.561 5.561 22 Si 0.793 3.207 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.191 1.191 26 C -0.402 4.402 27 S 0.408 5.592 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -14.488 -11.686 17.088 25.268 hybrid contribution 0.919 0.065 -1.253 1.556 sum -13.569 -11.621 15.835 23.873 Atomic orbital electron populations 1.20625 0.82842 1.05458 1.04948 1.27636 1.03230 0.90951 1.01830 1.66055 1.04431 1.32920 1.17829 1.19883 0.90047 0.93982 1.03303 1.20294 0.96935 0.92654 0.98237 1.21774 0.93374 0.83800 1.00513 1.46553 1.16650 1.15782 1.36977 1.25704 1.00618 0.83335 0.99293 1.20415 0.89347 1.04360 0.97527 1.73871 1.01855 1.26671 1.15260 1.74579 1.24862 1.04953 1.14638 1.22848 0.87486 0.92284 0.97875 1.59294 1.21339 1.36334 1.02064 1.22228 0.87092 1.00302 0.99982 1.19010 0.93427 0.93334 0.81025 0.99093 1.22244 0.99105 0.98730 1.01528 1.21213 1.45331 0.96955 0.92017 0.91112 1.25771 0.95319 0.98117 0.99404 1.70055 1.49497 1.23593 1.12972 0.85459 0.79171 0.78952 0.77141 1.19402 1.21342 1.19089 1.27122 1.04831 0.95901 1.12396 1.83829 0.96382 1.11582 1.67414 0.88617 0.87896 0.88891 0.89632 0.88903 0.87058 0.89972 0.88464 0.88285 0.87523 0.95466 0.90977 0.89622 0.94514 0.95106 0.92125 0.92829 0.79328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.46 71.24 0.75 0.01 16 2 C 0.04 0.69 7.39 88.52 0.65 1.35 16 3 N -0.50 -10.71 10.26 -179.41 -1.84 -12.55 16 4 C 0.06 1.31 6.08 41.52 0.25 1.56 16 5 C -0.04 -0.93 6.03 29.85 0.18 -0.75 16 6 C 0.13 3.60 5.80 86.38 0.50 4.11 16 7 N -0.47 -16.28 2.81 -514.86 -1.45 -17.73 16 8 C 0.18 5.89 8.07 137.64 1.11 7.00 16 9 C -0.06 -1.15 10.15 71.24 0.72 -0.43 16 10 N -0.34 -14.04 12.18 -49.54 -0.60 -14.64 16 11 N -0.35 -16.20 9.89 -58.01 -0.57 -16.77 16 12 C 0.35 15.20 6.26 260.11 1.63 16.83 16 13 N -0.46 -20.76 4.73 -711.01 -3.37 -24.13 16 14 C 0.05 2.04 8.57 127.69 1.09 3.13 16 15 C 0.24 12.64 2.28 44.17 0.10 12.74 16 16 H -0.01 -0.54 8.05 -2.39 -0.02 -0.56 16 17 C -0.16 -8.44 8.16 71.98 0.59 -7.85 16 18 C -0.52 -27.95 7.87 25.60 0.20 -27.75 16 19 H 0.07 3.66 7.15 -2.91 -0.02 3.64 16 20 C 0.01 0.71 5.30 84.66 0.45 1.16 16 21 N -0.92 -53.89 11.32 21.45 0.24 -53.65 16 22 Si 0.97 42.81 29.54 68.60 2.03 44.83 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 C -0.26 -5.03 11.07 66.78 0.74 -4.29 16 27 S 0.15 2.31 23.18 -56.49 -1.31 1.00 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 2.04 8.03 -2.39 -0.02 2.03 16 32 H 0.09 1.93 8.13 -2.39 -0.02 1.91 16 33 H 0.11 2.77 7.84 -2.39 -0.02 2.76 16 34 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.10 1.53 7.97 -2.39 -0.02 1.51 16 37 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.03 1.14 6.48 -2.39 -0.02 1.12 16 39 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.09 3.41 6.70 -2.39 -0.02 3.39 16 41 H 0.04 1.87 6.48 -2.39 -0.02 1.86 16 42 H 0.03 1.65 6.00 -2.39 -0.01 1.64 16 43 H 0.06 3.56 6.07 -2.38 -0.01 3.54 16 44 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.19 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -72.85 380.99 3.10 -69.75 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.00 Total: 17.05 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 8.97 Total: 6.83 kcal Atomic # 7 Polarization: -131.88 SS G_CDS: -7.59 Total: -139.46 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.31 Total: 1.00 kcal Total: -72.85 3.10 -69.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417467472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.031 kcal (2) G-P(sol) polarization free energy of solvation -72.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds