Wall clock time and date at job start Tue Mar 31 2020 20:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47028 * 2 1 4 4 N 1.31961 * 119.63544 * 270.27205 * 3 2 1 5 5 C 1.32197 * 121.71947 * 180.31077 * 4 3 2 6 6 O 1.35758 * 119.60886 * 179.68548 * 5 4 3 7 7 C 1.42894 * 117.00054 * 0.02562 * 6 5 4 8 8 C 1.38902 * 120.77851 * 359.70255 * 5 4 3 9 9 C 1.38317 * 119.18467 * 359.97438 * 8 5 4 10 10 C 1.38637 * 119.63048 * 89.99766 * 3 2 1 11 11 N 1.40186 * 120.42540 * 359.97438 * 10 3 2 12 12 C 1.34780 * 120.00477 * 156.91819 * 11 10 3 13 13 O 1.21589 * 119.99360 * 355.09662 * 12 11 10 14 14 N 1.34773 * 119.99980 * 175.10215 * 12 11 10 15 15 C 1.47423 * 125.65324 * 359.97434 * 14 12 11 16 16 C 1.54905 * 104.83442 * 155.90592 * 15 14 12 17 17 C 1.55162 * 101.57930 * 37.01295 * 16 15 14 18 18 O 1.42894 * 110.72156 * 83.03611 * 17 16 15 19 19 C 1.50700 * 110.71993 * 206.13022 * 17 16 15 20 20 H 1.08004 * 119.99786 * 0.05672 * 19 17 16 21 21 C 1.37874 * 120.00199 * 179.77841 * 19 17 16 22 22 N 1.31511 * 119.99528 * 354.79307 * 21 19 17 23 23 Si 1.86797 * 120.00141 * 174.78903 * 21 19 17 24 24 H 1.48506 * 109.46886 * 94.99935 * 23 21 19 25 25 H 1.48495 * 109.47380 * 214.99896 * 23 21 19 26 26 H 1.48497 * 109.47149 * 335.00300 * 23 21 19 27 27 C 1.47320 * 125.61345 * 180.20101 * 14 12 11 28 28 H 1.09004 * 109.46718 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47228 * 299.99950 * 1 2 3 30 30 H 1.09004 * 109.47211 * 60.00061 * 1 2 3 31 31 H 1.09008 * 109.47033 * 240.00440 * 2 1 3 32 32 H 1.08993 * 109.47445 * 120.00337 * 2 1 3 33 33 H 1.08996 * 109.47531 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47622 * 300.00724 * 7 6 5 35 35 H 1.09002 * 109.47268 * 60.00280 * 7 6 5 36 36 H 1.08005 * 120.40279 * 180.02562 * 8 5 4 37 37 H 1.08006 * 120.78363 * 179.97438 * 9 8 5 38 38 H 0.97002 * 119.99764 * 336.91805 * 11 10 3 39 39 H 1.09002 * 110.36255 * 37.06854 * 15 14 12 40 40 H 1.08996 * 110.36581 * 274.75233 * 15 14 12 41 41 H 1.08995 * 111.00705 * 278.93602 * 16 15 14 42 42 H 1.09002 * 111.00077 * 155.08232 * 16 15 14 43 43 H 0.96699 * 114.00391 * 182.44601 * 18 17 16 44 44 H 0.97006 * 119.99828 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.06456 * 61.67574 * 27 14 12 46 46 H 1.09000 * 109.84851 * 300.41740 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2447 2.0379 -1.1470 5 6 2.6905 3.2814 -1.1951 6 8 2.9001 3.8728 -2.3990 7 6 2.6175 3.0931 -3.5627 8 6 2.9475 3.9901 -0.0284 9 6 2.7307 3.3790 1.1934 10 6 2.2607 2.0671 1.2051 11 7 2.0269 1.4075 2.4198 12 6 2.6562 1.8149 3.5399 13 8 3.4928 2.6953 3.4811 14 7 2.3582 1.2463 4.7249 15 6 1.3691 0.1744 4.9392 16 6 1.8238 -0.5304 6.2415 17 6 2.3359 0.6690 7.0822 18 8 1.2513 1.3211 7.7457 19 6 3.3735 0.2180 8.0777 20 1 3.6595 -0.8224 8.1257 21 6 3.9619 1.1344 8.9233 22 7 3.6944 2.4154 8.7931 23 14 5.1387 0.5563 10.2538 24 1 6.5344 0.6514 9.7555 25 1 4.9836 1.4118 11.4576 26 1 4.8338 -0.8537 10.6058 27 6 2.9641 1.5970 6.0212 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.8277 3.6827 -4.4550 34 1 3.2423 2.1999 -3.5623 35 1 1.5672 2.8016 -3.5585 36 1 3.3112 5.0059 -0.0748 37 1 2.9222 3.9059 2.1167 38 1 1.4122 0.6580 2.4542 39 1 1.3823 -0.5263 4.1042 40 1 0.3725 0.5974 5.0647 41 1 2.6274 -1.2392 6.0421 42 1 0.9844 -1.0220 6.7332 43 1 1.5131 2.1004 8.2548 44 1 4.1080 3.0601 9.3883 45 1 2.7496 2.6375 6.2650 46 1 4.0417 1.4380 5.9811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434752937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:48 Heat of formation + Delta-G solvation = -71.573891 kcal Electronic energy + Delta-G solvation = -29442.650365 eV Core-core repulsion = 25333.092954 eV Total energy + Delta-G solvation = -4109.557411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.11087 -39.82562 -38.31426 -37.37271 -34.82615 -34.41512 -33.98084 -32.25617 -31.46098 -30.26080 -29.06954 -27.90490 -27.14706 -25.22639 -24.44645 -23.38841 -22.43077 -21.63082 -19.85443 -19.67347 -18.50300 -17.95108 -17.20929 -17.01907 -16.55456 -16.08268 -15.51838 -15.23984 -14.80027 -14.68512 -14.62945 -14.46950 -13.94233 -13.79022 -13.55122 -13.16215 -13.05727 -12.96377 -12.84183 -12.42625 -12.36477 -12.04263 -11.81074 -11.70866 -11.63611 -11.33651 -11.25457 -11.10674 -10.88680 -10.75647 -10.55073 -10.47651 -10.24203 -10.01373 -9.64603 -9.41205 -9.28268 -8.75607 -8.39650 -8.14219 -7.65424 -6.34740 -4.42982 1.08096 1.32783 2.74985 3.10937 3.17776 3.26036 3.29003 3.36561 3.82823 4.04612 4.12745 4.23797 4.59875 4.90716 4.93568 5.01235 5.08009 5.11748 5.15443 5.17601 5.23398 5.31859 5.44020 5.54513 5.61322 5.64914 5.67946 5.75763 5.82181 5.88718 5.93879 6.01748 6.10792 6.31184 6.39745 6.61273 6.73333 6.77478 6.82293 7.09708 7.19838 7.22387 7.41004 7.67600 7.81943 7.94212 8.23363 8.59650 8.80348 9.24248 9.31134 10.72885 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.002670 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.516225 B =10484.114018 C =11260.456254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C 0.127 3.873 4 N -0.517 5.517 5 C 0.290 3.710 6 O -0.311 6.311 7 C 0.043 3.957 8 C -0.168 4.168 9 C -0.056 4.056 10 C 0.103 3.897 11 N -0.678 5.678 12 C 0.713 3.287 13 O -0.578 6.578 14 N -0.622 5.622 15 C 0.099 3.901 16 C -0.115 4.115 17 C 0.249 3.751 18 O -0.584 6.584 19 C -0.539 4.539 20 H 0.067 0.933 21 C 0.071 3.929 22 N -0.893 5.893 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.283 1.283 26 H -0.272 1.272 27 C 0.120 3.880 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.142 0.858 37 H 0.171 0.829 38 H 0.405 0.595 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.384 0.616 44 H 0.271 0.729 45 H 0.066 0.934 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.083 -2.687 -18.042 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.012 4.012 4 N -0.240 5.240 5 C 0.110 3.890 6 O -0.218 6.218 7 C -0.053 4.053 8 C -0.189 4.189 9 C -0.083 4.083 10 C 0.004 3.996 11 N -0.326 5.326 12 C 0.415 3.585 13 O -0.457 6.457 14 N -0.358 5.358 15 C -0.024 4.024 16 C -0.153 4.153 17 C 0.208 3.792 18 O -0.393 6.393 19 C -0.577 4.577 20 H 0.086 0.914 21 C -0.132 4.132 22 N -0.532 5.532 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.196 1.196 27 C -0.002 4.002 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.160 0.840 37 H 0.188 0.812 38 H 0.242 0.758 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.235 0.765 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.825 -2.498 -19.074 20.100 hybrid contribution 0.860 0.150 1.549 1.779 sum -4.965 -2.348 -17.525 18.365 Atomic orbital electron populations 1.21743 0.94012 1.02234 1.02443 1.20436 0.96481 0.90559 1.03724 1.20443 0.99000 0.95999 0.85796 1.66971 1.17970 1.09632 1.29411 1.19686 0.94570 0.88699 0.86006 1.86238 1.82487 1.40938 1.12172 1.22774 1.01389 0.96183 0.84949 1.21025 1.06387 1.02107 0.89414 1.21933 0.94628 0.92470 0.99311 1.18217 1.03364 0.92601 0.85374 1.42694 1.47937 1.36268 1.05749 1.15522 0.81322 0.82163 0.79479 1.90833 1.36366 1.33752 1.84717 1.48132 1.42201 1.38892 1.06626 1.22332 0.92555 0.88993 0.98541 1.22734 1.01099 0.98029 0.93476 1.19488 0.84760 0.86785 0.88171 1.86093 1.36551 1.47728 1.68975 1.21495 1.22270 0.95317 1.18597 0.91447 1.25072 0.96072 0.94746 0.97355 1.69677 1.44307 1.00796 1.38424 0.86382 0.80673 0.78894 0.80946 1.20503 1.20883 1.19628 1.23099 0.97898 1.00742 0.78441 0.91668 0.92657 0.92112 0.89574 0.90391 0.89004 0.92553 0.92575 0.83968 0.81215 0.75791 0.92542 0.91533 0.90393 0.90324 0.76496 0.91914 0.91513 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.07 -0.72 5.67 -27.88 -0.16 -0.88 16 3 C 0.13 1.66 6.05 -82.39 -0.50 1.16 16 4 N -0.52 -6.98 9.12 -9.41 -0.09 -7.07 16 5 C 0.29 4.02 7.49 -17.15 -0.13 3.89 16 6 O -0.31 -3.88 10.48 -18.98 -0.20 -4.08 16 7 C 0.04 0.38 10.38 101.05 1.05 1.43 16 8 C -0.17 -2.32 10.03 -39.31 -0.39 -2.72 16 9 C -0.06 -0.86 8.84 -39.13 -0.35 -1.21 16 10 C 0.10 1.52 6.46 -83.47 -0.54 0.98 16 11 N -0.68 -9.95 4.97 -14.10 -0.07 -10.02 16 12 C 0.71 13.48 8.33 -86.92 -0.72 12.75 16 13 O -0.58 -12.77 13.75 5.29 0.07 -12.69 16 14 N -0.62 -11.98 3.33 -176.00 -0.59 -12.57 16 15 C 0.10 1.57 6.61 -2.53 -0.02 1.56 16 16 C -0.12 -2.13 6.23 -24.58 -0.15 -2.28 16 17 C 0.25 5.70 0.85 -89.94 -0.08 5.62 16 18 O -0.58 -14.01 13.07 -35.23 -0.46 -14.47 16 19 C -0.54 -13.53 8.10 -34.44 -0.28 -13.81 16 20 H 0.07 1.67 7.77 -52.48 -0.41 1.26 16 21 C 0.07 1.80 5.27 -17.82 -0.09 1.70 16 22 N -0.89 -23.09 10.99 55.43 0.61 -22.48 16 23 Si 0.90 19.96 29.54 -169.99 -5.02 14.93 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 C 0.12 2.76 5.41 -2.90 -0.02 2.74 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.46 8.03 -51.93 -0.42 0.05 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.08 0.71 6.93 -51.93 -0.36 0.35 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 35 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.17 2.93 5.73 -52.48 -0.30 2.63 16 38 H 0.41 4.81 5.68 -40.82 -0.23 4.58 16 39 H 0.06 0.69 7.23 -51.93 -0.38 0.32 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.38 8.02 -51.93 -0.42 0.97 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.38 9.52 7.25 45.56 0.33 9.85 16 44 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 45 H 0.07 1.68 8.00 -51.93 -0.42 1.27 16 46 H 0.07 1.73 7.81 -51.93 -0.41 1.32 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -29.25 376.07 -8.02 -37.27 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -5.94 Total: 15.40 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -2.01 Total: 10.12 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.13 Total: -52.13 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.59 Total: -31.25 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.25 -8.02 -37.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434752937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.309 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds