Wall clock time and date at job start Tue Mar 31 2020 20:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47028 * 2 1 4 4 N 1.31961 * 119.63544 * 270.27205 * 3 2 1 5 5 C 1.32197 * 121.71947 * 180.31077 * 4 3 2 6 6 O 1.35758 * 119.60886 * 179.68548 * 5 4 3 7 7 C 1.42894 * 117.00054 * 0.02562 * 6 5 4 8 8 C 1.38902 * 120.77851 * 359.70255 * 5 4 3 9 9 C 1.38317 * 119.18467 * 359.97438 * 8 5 4 10 10 C 1.38637 * 119.63048 * 89.99766 * 3 2 1 11 11 N 1.40186 * 120.42540 * 359.97438 * 10 3 2 12 12 C 1.34780 * 120.00477 * 156.91819 * 11 10 3 13 13 O 1.21589 * 119.99360 * 355.09662 * 12 11 10 14 14 N 1.34773 * 119.99980 * 175.10215 * 12 11 10 15 15 C 1.47423 * 125.65324 * 359.97434 * 14 12 11 16 16 C 1.54905 * 104.83442 * 155.90592 * 15 14 12 17 17 C 1.55162 * 101.57930 * 37.01295 * 16 15 14 18 18 O 1.42894 * 110.72156 * 83.03611 * 17 16 15 19 19 C 1.50700 * 110.71993 * 206.13022 * 17 16 15 20 20 H 1.08004 * 119.99786 * 0.05672 * 19 17 16 21 21 C 1.37874 * 120.00199 * 179.77841 * 19 17 16 22 22 N 1.31511 * 119.99528 * 354.79307 * 21 19 17 23 23 Si 1.86797 * 120.00141 * 174.78903 * 21 19 17 24 24 H 1.48506 * 109.46886 * 94.99935 * 23 21 19 25 25 H 1.48495 * 109.47380 * 214.99896 * 23 21 19 26 26 H 1.48497 * 109.47149 * 335.00300 * 23 21 19 27 27 C 1.47320 * 125.61345 * 180.20101 * 14 12 11 28 28 H 1.09004 * 109.46718 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47228 * 299.99950 * 1 2 3 30 30 H 1.09004 * 109.47211 * 60.00061 * 1 2 3 31 31 H 1.09008 * 109.47033 * 240.00440 * 2 1 3 32 32 H 1.08993 * 109.47445 * 120.00337 * 2 1 3 33 33 H 1.08996 * 109.47531 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47622 * 300.00724 * 7 6 5 35 35 H 1.09002 * 109.47268 * 60.00280 * 7 6 5 36 36 H 1.08005 * 120.40279 * 180.02562 * 8 5 4 37 37 H 1.08006 * 120.78363 * 179.97438 * 9 8 5 38 38 H 0.97002 * 119.99764 * 336.91805 * 11 10 3 39 39 H 1.09002 * 110.36255 * 37.06854 * 15 14 12 40 40 H 1.08996 * 110.36581 * 274.75233 * 15 14 12 41 41 H 1.08995 * 111.00705 * 278.93602 * 16 15 14 42 42 H 1.09002 * 111.00077 * 155.08232 * 16 15 14 43 43 H 0.96699 * 114.00391 * 182.44601 * 18 17 16 44 44 H 0.97006 * 119.99828 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.06456 * 61.67574 * 27 14 12 46 46 H 1.09000 * 109.84851 * 300.41740 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2447 2.0379 -1.1470 5 6 2.6905 3.2814 -1.1951 6 8 2.9001 3.8728 -2.3990 7 6 2.6175 3.0931 -3.5627 8 6 2.9475 3.9901 -0.0284 9 6 2.7307 3.3790 1.1934 10 6 2.2607 2.0671 1.2051 11 7 2.0269 1.4075 2.4198 12 6 2.6562 1.8149 3.5399 13 8 3.4928 2.6953 3.4811 14 7 2.3582 1.2463 4.7249 15 6 1.3691 0.1744 4.9392 16 6 1.8238 -0.5304 6.2415 17 6 2.3359 0.6690 7.0822 18 8 1.2513 1.3211 7.7457 19 6 3.3735 0.2180 8.0777 20 1 3.6595 -0.8224 8.1257 21 6 3.9619 1.1344 8.9233 22 7 3.6944 2.4154 8.7931 23 14 5.1387 0.5563 10.2538 24 1 6.5344 0.6514 9.7555 25 1 4.9836 1.4118 11.4576 26 1 4.8338 -0.8537 10.6058 27 6 2.9641 1.5970 6.0212 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.8277 3.6827 -4.4550 34 1 3.2423 2.1999 -3.5623 35 1 1.5672 2.8016 -3.5585 36 1 3.3112 5.0059 -0.0748 37 1 2.9222 3.9059 2.1167 38 1 1.4122 0.6580 2.4542 39 1 1.3823 -0.5263 4.1042 40 1 0.3725 0.5974 5.0647 41 1 2.6274 -1.2392 6.0421 42 1 0.9844 -1.0220 6.7332 43 1 1.5131 2.1004 8.2548 44 1 4.1080 3.0601 9.3883 45 1 2.7496 2.6375 6.2650 46 1 4.0417 1.4380 5.9811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434752937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:47 Heat of formation + Delta-G solvation = -93.259698 kcal Electronic energy + Delta-G solvation = -29443.590732 eV Core-core repulsion = 25333.092954 eV Total energy + Delta-G solvation = -4110.497778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.28867 -41.14906 -39.58494 -38.76739 -36.23658 -35.93028 -34.96158 -34.19222 -32.59635 -31.66092 -30.20239 -29.51496 -28.06978 -26.93866 -25.37416 -24.75516 -23.72568 -22.56060 -21.46782 -21.14167 -19.78494 -19.13367 -18.94097 -18.35315 -17.65998 -17.15262 -17.04870 -16.81672 -16.29885 -16.19437 -15.61655 -15.55461 -15.13879 -14.83394 -14.78428 -14.68727 -14.57815 -14.33176 -13.91845 -13.86464 -13.52350 -13.35791 -13.20497 -12.85549 -12.77913 -12.53321 -12.48969 -12.40345 -12.30058 -12.27937 -12.08933 -11.96405 -11.53484 -11.43153 -11.17478 -10.77393 -10.67172 -10.49878 -10.27825 -9.68048 -8.82223 -8.26690 -6.41457 0.00992 0.17669 1.36711 1.42203 1.45160 1.54160 1.94223 2.15444 2.37978 2.70085 2.81808 2.99934 3.12615 3.61975 3.78458 3.85081 4.03744 4.10798 4.16471 4.29814 4.32757 4.38196 4.41238 4.47047 4.50032 4.57705 4.62271 4.70847 4.77607 4.83579 4.95664 5.03620 5.05070 5.10587 5.12458 5.17170 5.20952 5.36471 5.38587 5.48354 5.56413 5.75391 5.92590 6.07534 6.22946 6.64386 6.75350 6.85069 7.29485 7.34006 7.34966 8.79182 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.002670 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.516225 B =10484.114018 C =11260.456254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C 0.139 3.861 4 N -0.518 5.518 5 C 0.289 3.711 6 O -0.319 6.319 7 C 0.037 3.963 8 C -0.175 4.175 9 C -0.071 4.071 10 C 0.082 3.918 11 N -0.656 5.656 12 C 0.710 3.290 13 O -0.618 6.618 14 N -0.626 5.626 15 C 0.102 3.898 16 C -0.110 4.110 17 C 0.233 3.767 18 O -0.586 6.586 19 C -0.556 4.556 20 H 0.068 0.932 21 C 0.026 3.974 22 N -0.915 5.915 23 Si 0.961 3.039 24 H -0.281 1.281 25 H -0.282 1.282 26 H -0.264 1.264 27 C 0.139 3.861 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.155 0.845 37 H 0.146 0.854 38 H 0.421 0.579 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.376 0.624 44 H 0.270 0.730 45 H 0.032 0.968 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.177 -4.913 -19.907 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.001 4.001 4 N -0.242 5.242 5 C 0.109 3.891 6 O -0.226 6.226 7 C -0.058 4.058 8 C -0.196 4.196 9 C -0.098 4.098 10 C -0.017 4.017 11 N -0.305 5.305 12 C 0.413 3.587 13 O -0.499 6.499 14 N -0.362 5.362 15 C -0.020 4.020 16 C -0.148 4.148 17 C 0.193 3.807 18 O -0.394 6.394 19 C -0.594 4.594 20 H 0.087 0.913 21 C -0.175 4.175 22 N -0.555 5.555 23 Si 0.787 3.213 24 H -0.208 1.208 25 H -0.207 1.207 26 H -0.189 1.189 27 C 0.015 3.985 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.140 0.860 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.173 0.827 37 H 0.164 0.836 38 H 0.261 0.739 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.226 0.774 44 H 0.079 0.921 45 H 0.050 0.950 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.964 -4.762 -20.995 22.627 hybrid contribution 1.206 0.879 1.988 2.486 sum -5.758 -3.883 -19.007 20.236 Atomic orbital electron populations 1.21729 0.92513 1.03690 1.02056 1.20594 0.97608 0.88197 1.04769 1.20969 0.97120 0.97236 0.84787 1.67108 1.18126 1.09524 1.29404 1.19847 0.93904 0.88796 0.86562 1.86236 1.82246 1.41659 1.12490 1.23050 1.01565 0.96612 0.84534 1.21119 1.06562 1.02839 0.89099 1.21794 0.95732 0.93267 0.99037 1.18348 1.04883 0.92617 0.85805 1.42301 1.47413 1.36344 1.04465 1.15652 0.81169 0.81719 0.80176 1.90819 1.38185 1.35457 1.85431 1.48005 1.42778 1.39910 1.05520 1.22528 0.91725 0.88584 0.99146 1.22728 1.01807 0.96472 0.93748 1.19709 0.84652 0.88325 0.88061 1.86084 1.36970 1.47418 1.68972 1.21851 1.22895 0.95394 1.19253 0.91340 1.25791 0.97562 0.94885 0.99259 1.69786 1.45127 1.01537 1.39005 0.85491 0.78577 0.78683 0.78576 1.20753 1.20749 1.18866 1.22552 0.96142 0.98926 0.80861 0.89284 0.92812 0.92790 0.88595 0.89275 0.86030 0.92607 0.92316 0.82699 0.83637 0.73870 0.87622 0.90582 0.89632 0.88875 0.77420 0.92078 0.94955 0.94753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.89 71.98 0.71 -1.12 16 2 C -0.07 -1.19 5.67 29.85 0.17 -1.03 16 3 C 0.14 3.35 6.05 42.64 0.26 3.61 16 4 N -0.52 -13.13 9.12 -296.52 -2.70 -15.83 16 5 C 0.29 7.70 7.49 84.80 0.63 8.33 16 6 O -0.32 -7.50 10.48 -90.85 -0.95 -8.45 16 7 C 0.04 0.59 10.38 113.37 1.18 1.77 16 8 C -0.18 -4.86 10.03 22.45 0.23 -4.64 16 9 C -0.07 -2.24 8.84 22.56 0.20 -2.04 16 10 C 0.08 2.34 6.46 38.17 0.25 2.59 16 11 N -0.66 -18.35 4.97 -316.77 -1.57 -19.93 16 12 C 0.71 26.97 8.33 179.05 1.49 28.46 16 13 O -0.62 -28.45 13.75 -4.00 -0.05 -28.50 16 14 N -0.63 -23.95 3.33 -829.02 -2.76 -26.72 16 15 C 0.10 2.97 6.61 86.85 0.57 3.54 16 16 C -0.11 -3.83 6.23 31.99 0.20 -3.63 16 17 C 0.23 10.76 0.85 -10.35 -0.01 10.75 16 18 O -0.59 -28.47 13.07 -148.98 -1.95 -30.41 16 19 C -0.56 -28.17 8.10 25.60 0.21 -27.96 16 20 H 0.07 3.37 7.77 -2.91 -0.02 3.35 16 21 C 0.03 1.33 5.27 84.65 0.45 1.78 16 22 N -0.92 -48.87 10.99 21.45 0.24 -48.63 16 23 Si 0.96 41.30 29.54 68.60 2.03 43.33 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 27 C 0.14 6.63 5.41 86.67 0.47 7.09 16 28 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.05 0.72 8.03 -2.39 -0.02 0.70 16 30 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.09 1.27 6.93 -2.39 -0.02 1.25 16 33 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 35 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 36 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.15 5.36 5.73 -2.91 -0.02 5.34 16 38 H 0.42 8.72 5.68 -92.71 -0.53 8.19 16 39 H 0.11 2.08 7.23 -2.39 -0.02 2.06 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.09 2.84 8.02 -2.39 -0.02 2.82 16 42 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.38 19.31 7.25 -74.06 -0.54 18.77 16 44 H 0.27 13.85 8.31 -92.70 -0.77 13.08 16 45 H 0.03 1.73 8.00 -2.39 -0.02 1.71 16 46 H 0.03 1.83 7.81 -2.39 -0.02 1.81 16 Total: -1.00 -66.11 376.07 -0.77 -66.88 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -0.04 Total: 40.77 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: 7.00 Total: 27.51 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -6.81 Total: -111.11 kcal Atomic # 8 Polarization: -64.42 SS G_CDS: -2.95 Total: -67.37 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -66.11 -0.77 -66.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434752937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.381 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds