Wall clock time and date at job start Tue Mar 31 2020 20:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50705 * 109.47519 * 2 1 4 4 N 1.31960 * 119.62592 * 269.72715 * 3 2 1 5 5 C 1.32202 * 121.71368 * 179.74915 * 4 3 2 6 6 O 1.35758 * 119.60773 * 180.24413 * 5 4 3 7 7 C 1.42892 * 116.99923 * 0.27464 * 6 5 4 8 8 C 1.38902 * 120.77956 * 0.52213 * 5 4 3 9 9 C 1.38328 * 119.18741 * 359.74877 * 8 5 4 10 10 C 1.38645 * 119.63505 * 89.99442 * 3 2 1 11 11 N 1.40184 * 120.42096 * 0.02562 * 10 3 2 12 12 C 1.34777 * 119.99918 * 145.73000 * 11 10 3 13 13 O 1.21586 * 120.00241 * 4.28677 * 12 11 10 14 14 N 1.34782 * 120.00080 * 184.28314 * 12 11 10 15 15 C 1.47022 * 125.64685 * 359.69515 * 14 12 11 16 16 C 1.54332 * 107.26403 * 178.84721 * 15 14 12 17 17 C 1.55162 * 103.02286 * 338.14162 * 16 15 14 18 18 O 1.42902 * 111.00005 * 277.23309 * 17 16 15 19 19 C 1.50698 * 111.03596 * 153.39575 * 17 16 15 20 20 H 1.07998 * 120.00178 * 6.32816 * 19 17 16 21 21 C 1.37877 * 119.99351 * 186.33199 * 19 17 16 22 22 N 1.31510 * 120.00393 * 359.97438 * 21 19 17 23 23 Si 1.86807 * 119.99763 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46778 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46997 * 120.00006 * 23 21 19 26 26 H 1.48501 * 109.46937 * 240.00047 * 23 21 19 27 27 C 1.47419 * 125.64921 * 179.97438 * 14 12 11 28 28 H 1.09004 * 109.47203 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46647 * 60.00396 * 1 2 3 30 30 H 1.08999 * 109.47164 * 300.00534 * 1 2 3 31 31 H 1.09007 * 109.47474 * 119.99743 * 2 1 3 32 32 H 1.08998 * 109.47563 * 239.99828 * 2 1 3 33 33 H 1.09005 * 109.46948 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.47503 * 299.99717 * 7 6 5 35 35 H 1.09002 * 109.47712 * 60.00220 * 7 6 5 36 36 H 1.08003 * 120.40616 * 179.75917 * 8 5 4 37 37 H 1.07992 * 120.78702 * 179.97438 * 9 8 5 38 38 H 0.97004 * 120.00291 * 325.73024 * 11 10 3 39 39 H 1.08997 * 109.88234 * 298.39115 * 15 14 12 40 40 H 1.09001 * 109.88451 * 59.55556 * 15 14 12 41 41 H 1.08995 * 110.85194 * 219.67205 * 16 15 14 42 42 H 1.09004 * 110.51703 * 96.45244 * 16 15 14 43 43 H 0.96700 * 113.99908 * 173.64969 * 18 17 16 44 44 H 0.97003 * 120.00139 * 180.02562 * 22 21 19 45 45 H 1.09003 * 110.36897 * 322.93198 * 27 14 12 46 46 H 1.09005 * 110.36966 * 85.14262 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2550 2.0340 -1.1471 5 6 2.6910 3.2811 -1.1953 6 8 2.9010 3.8722 -2.3992 7 6 2.6245 3.0902 -3.5628 8 6 2.9423 3.9919 -0.0286 9 6 2.7258 3.3809 1.1934 10 6 2.2608 2.0672 1.2051 11 7 2.0279 1.4074 2.4198 12 6 2.8141 1.6594 3.4851 13 8 3.6753 2.5150 3.4164 14 7 2.6457 0.9630 4.6267 15 6 1.6436 -0.0897 4.8484 16 6 1.8444 -0.6182 6.2844 17 6 3.3103 -0.2207 6.6015 18 8 4.2274 -1.1785 6.0688 19 6 3.5152 -0.0475 8.0844 20 1 2.7215 -0.2992 8.7722 21 6 4.7159 0.4323 8.5629 22 7 5.6826 0.7383 7.7254 23 14 4.9703 0.6463 10.4012 24 1 3.7395 0.2336 11.1224 25 1 6.1103 -0.1956 10.8445 26 1 5.2628 2.0717 10.6977 27 6 3.4320 1.1347 5.8618 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 2.8344 3.6800 -4.4552 34 1 3.2532 2.1999 -3.5601 35 1 1.5755 2.7942 -3.5610 36 1 3.3021 5.0091 -0.0750 37 1 2.9130 3.9092 2.1164 38 1 1.3010 0.7694 2.4937 39 1 0.6411 0.3243 4.7405 40 1 1.7917 -0.8990 4.1334 41 1 1.7221 -1.7007 6.3201 42 1 1.1547 -0.1283 6.9718 43 1 5.1563 -0.9247 6.1565 44 1 6.5275 1.0756 8.0621 45 1 4.4746 1.3437 5.6219 46 1 3.0148 1.9384 6.4686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434752943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:52 Heat of formation + Delta-G solvation = -74.049271 kcal Electronic energy + Delta-G solvation = -29527.262793 eV Core-core repulsion = 25417.598042 eV Total energy + Delta-G solvation = -4109.664751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07114 -39.78730 -38.30363 -37.31783 -34.75280 -34.32065 -33.98049 -32.27423 -31.45560 -30.28920 -29.06080 -27.85912 -27.13856 -25.21909 -24.41507 -23.36804 -22.35136 -21.61480 -19.77276 -19.71708 -18.42954 -17.96486 -17.16285 -16.97654 -16.58046 -16.08462 -15.46032 -15.17642 -14.81404 -14.68805 -14.63387 -14.40447 -13.96199 -13.77029 -13.57893 -13.14678 -13.10308 -12.97617 -12.82585 -12.40771 -12.23020 -12.03137 -11.71701 -11.70446 -11.58655 -11.30786 -11.21641 -11.08697 -10.89990 -10.68277 -10.50097 -10.40683 -10.23843 -9.95621 -9.69307 -9.44104 -9.26720 -8.74876 -8.44696 -8.03322 -7.67934 -6.31856 -4.41816 1.07735 1.31609 2.80091 3.10254 3.17791 3.26792 3.29628 3.42315 3.80844 4.05876 4.18187 4.26529 4.62618 4.94910 4.96746 5.03182 5.07989 5.15092 5.17572 5.19379 5.29272 5.30158 5.44723 5.53227 5.62104 5.67213 5.69381 5.74873 5.83739 5.91006 5.97635 6.03584 6.12823 6.31013 6.42423 6.62211 6.74831 6.78830 6.81411 7.11795 7.21166 7.24006 7.44499 7.70046 7.81890 7.97527 8.28653 8.62342 8.86766 9.25152 9.33655 10.75140 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.002716 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.380582 B =10305.632704 C =11120.758788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C 0.137 3.863 4 N -0.520 5.520 5 C 0.296 3.704 6 O -0.311 6.311 7 C 0.042 3.958 8 C -0.173 4.173 9 C -0.042 4.042 10 C 0.098 3.902 11 N -0.681 5.681 12 C 0.714 3.286 13 O -0.580 6.580 14 N -0.621 5.621 15 C 0.100 3.900 16 C -0.115 4.115 17 C 0.249 3.751 18 O -0.582 6.582 19 C -0.538 4.538 20 H 0.068 0.932 21 C 0.071 3.929 22 N -0.891 5.891 23 Si 0.904 3.096 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.112 3.888 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.142 0.858 37 H 0.161 0.839 38 H 0.405 0.595 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.382 0.618 44 H 0.270 0.730 45 H 0.088 0.912 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.117 1.048 -16.094 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.003 4.003 4 N -0.243 5.243 5 C 0.116 3.884 6 O -0.218 6.218 7 C -0.053 4.053 8 C -0.194 4.194 9 C -0.070 4.070 10 C 0.000 4.000 11 N -0.331 5.331 12 C 0.417 3.583 13 O -0.458 6.458 14 N -0.357 5.357 15 C -0.023 4.023 16 C -0.153 4.153 17 C 0.208 3.792 18 O -0.391 6.391 19 C -0.576 4.576 20 H 0.086 0.914 21 C -0.133 4.133 22 N -0.530 5.530 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.010 4.010 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.160 0.840 37 H 0.179 0.821 38 H 0.241 0.759 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.232 0.768 44 H 0.080 0.920 45 H 0.106 0.894 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.877 1.253 -17.107 19.793 hybrid contribution 0.525 0.435 1.713 1.844 sum -9.352 1.687 -15.394 18.091 Atomic orbital electron populations 1.21724 0.94054 1.02244 1.02245 1.20461 0.96398 0.90516 1.03978 1.20585 0.97895 0.95870 0.85921 1.67005 1.18202 1.09581 1.29513 1.19695 0.94092 0.88580 0.86002 1.86238 1.82563 1.40803 1.12193 1.22786 1.01451 0.96186 0.84901 1.20994 1.06791 1.02196 0.89438 1.21694 0.94210 0.92307 0.98791 1.18144 1.04216 0.92251 0.85436 1.42610 1.34978 1.46631 1.08838 1.15513 0.81477 0.81960 0.79368 1.90880 1.36856 1.35738 1.82346 1.47988 1.37553 1.37776 1.12353 1.22023 0.90705 0.90038 0.99534 1.22594 0.98680 1.01013 0.93021 1.19634 0.84973 0.83436 0.91166 1.86104 1.20622 1.48421 1.83958 1.21471 1.00228 1.44774 0.91127 0.91423 1.25087 0.95707 0.93663 0.98795 1.69719 1.05043 1.43569 1.34624 0.86351 0.78351 0.77882 0.84330 1.19585 1.20744 1.20772 1.23241 0.96154 1.00830 0.80735 0.91640 0.92178 0.92788 0.90084 0.89613 0.88970 0.92482 0.92550 0.83969 0.82144 0.75918 0.92864 0.92376 0.90593 0.90293 0.76843 0.91996 0.89413 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.89 37.15 0.37 -0.84 16 2 C -0.08 -0.78 5.69 -27.88 -0.16 -0.94 16 3 C 0.14 1.82 6.05 -82.38 -0.50 1.33 16 4 N -0.52 -7.13 9.12 -9.40 -0.09 -7.21 16 5 C 0.30 4.11 7.49 -17.15 -0.13 3.98 16 6 O -0.31 -3.89 10.48 -18.98 -0.20 -4.08 16 7 C 0.04 0.39 10.38 101.05 1.05 1.43 16 8 C -0.17 -2.37 10.03 -39.30 -0.39 -2.77 16 9 C -0.04 -0.65 8.80 -39.13 -0.34 -0.99 16 10 C 0.10 1.46 6.31 -83.47 -0.53 0.93 16 11 N -0.68 -10.14 4.72 -14.10 -0.07 -10.21 16 12 C 0.71 13.74 8.35 -86.91 -0.73 13.02 16 13 O -0.58 -13.09 14.04 5.29 0.07 -13.01 16 14 N -0.62 -12.08 3.33 -176.25 -0.59 -12.66 16 15 C 0.10 1.61 6.16 -3.06 -0.02 1.59 16 16 C -0.12 -2.13 6.13 -24.89 -0.15 -2.28 16 17 C 0.25 5.74 0.87 -89.63 -0.08 5.66 16 18 O -0.58 -14.29 13.16 -35.23 -0.46 -14.76 16 19 C -0.54 -13.49 8.27 -34.44 -0.28 -13.77 16 20 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 21 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 22 N -0.89 -23.24 10.69 55.43 0.59 -22.65 16 23 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.11 2.58 5.38 -2.55 -0.01 2.56 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.44 7.86 -51.93 -0.41 0.03 16 31 H 0.08 0.84 7.14 -51.93 -0.37 0.47 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 36 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.16 2.66 6.27 -52.49 -0.33 2.33 16 38 H 0.40 4.90 6.55 -40.82 -0.27 4.63 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 43 H 0.38 9.71 7.56 45.56 0.34 10.05 16 44 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 45 H 0.09 2.30 7.33 -51.93 -0.38 1.92 16 46 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -29.63 377.62 -8.08 -37.71 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -6.01 Total: 15.69 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -2.00 Total: 10.61 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.15 Total: -52.74 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.59 Total: -31.85 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.63 -8.08 -37.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434752943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.342 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds