Wall clock time and date at job start Tue Mar 31 2020 20:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50705 * 109.47519 * 2 1 4 4 N 1.31960 * 119.62592 * 269.72715 * 3 2 1 5 5 C 1.32202 * 121.71368 * 179.74915 * 4 3 2 6 6 O 1.35758 * 119.60773 * 180.24413 * 5 4 3 7 7 C 1.42892 * 116.99923 * 0.27464 * 6 5 4 8 8 C 1.38902 * 120.77956 * 0.52213 * 5 4 3 9 9 C 1.38328 * 119.18741 * 359.74877 * 8 5 4 10 10 C 1.38645 * 119.63505 * 89.99442 * 3 2 1 11 11 N 1.40184 * 120.42096 * 0.02562 * 10 3 2 12 12 C 1.34777 * 119.99918 * 145.73000 * 11 10 3 13 13 O 1.21586 * 120.00241 * 4.28677 * 12 11 10 14 14 N 1.34782 * 120.00080 * 184.28314 * 12 11 10 15 15 C 1.47022 * 125.64685 * 359.69515 * 14 12 11 16 16 C 1.54332 * 107.26403 * 178.84721 * 15 14 12 17 17 C 1.55162 * 103.02286 * 338.14162 * 16 15 14 18 18 O 1.42902 * 111.00005 * 277.23309 * 17 16 15 19 19 C 1.50698 * 111.03596 * 153.39575 * 17 16 15 20 20 H 1.07998 * 120.00178 * 6.32816 * 19 17 16 21 21 C 1.37877 * 119.99351 * 186.33199 * 19 17 16 22 22 N 1.31510 * 120.00393 * 359.97438 * 21 19 17 23 23 Si 1.86807 * 119.99763 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46778 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46997 * 120.00006 * 23 21 19 26 26 H 1.48501 * 109.46937 * 240.00047 * 23 21 19 27 27 C 1.47419 * 125.64921 * 179.97438 * 14 12 11 28 28 H 1.09004 * 109.47203 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46647 * 60.00396 * 1 2 3 30 30 H 1.08999 * 109.47164 * 300.00534 * 1 2 3 31 31 H 1.09007 * 109.47474 * 119.99743 * 2 1 3 32 32 H 1.08998 * 109.47563 * 239.99828 * 2 1 3 33 33 H 1.09005 * 109.46948 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.47503 * 299.99717 * 7 6 5 35 35 H 1.09002 * 109.47712 * 60.00220 * 7 6 5 36 36 H 1.08003 * 120.40616 * 179.75917 * 8 5 4 37 37 H 1.07992 * 120.78702 * 179.97438 * 9 8 5 38 38 H 0.97004 * 120.00291 * 325.73024 * 11 10 3 39 39 H 1.08997 * 109.88234 * 298.39115 * 15 14 12 40 40 H 1.09001 * 109.88451 * 59.55556 * 15 14 12 41 41 H 1.08995 * 110.85194 * 219.67205 * 16 15 14 42 42 H 1.09004 * 110.51703 * 96.45244 * 16 15 14 43 43 H 0.96700 * 113.99908 * 173.64969 * 18 17 16 44 44 H 0.97003 * 120.00139 * 180.02562 * 22 21 19 45 45 H 1.09003 * 110.36897 * 322.93198 * 27 14 12 46 46 H 1.09005 * 110.36966 * 85.14262 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2550 2.0340 -1.1471 5 6 2.6910 3.2811 -1.1953 6 8 2.9010 3.8722 -2.3992 7 6 2.6245 3.0902 -3.5628 8 6 2.9423 3.9919 -0.0286 9 6 2.7258 3.3809 1.1934 10 6 2.2608 2.0672 1.2051 11 7 2.0279 1.4074 2.4198 12 6 2.8141 1.6594 3.4851 13 8 3.6753 2.5150 3.4164 14 7 2.6457 0.9630 4.6267 15 6 1.6436 -0.0897 4.8484 16 6 1.8444 -0.6182 6.2844 17 6 3.3103 -0.2207 6.6015 18 8 4.2274 -1.1785 6.0688 19 6 3.5152 -0.0475 8.0844 20 1 2.7215 -0.2992 8.7722 21 6 4.7159 0.4323 8.5629 22 7 5.6826 0.7383 7.7254 23 14 4.9703 0.6463 10.4012 24 1 3.7395 0.2336 11.1224 25 1 6.1103 -0.1956 10.8445 26 1 5.2628 2.0717 10.6977 27 6 3.4320 1.1347 5.8618 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 2.8344 3.6800 -4.4552 34 1 3.2532 2.1999 -3.5601 35 1 1.5755 2.7942 -3.5610 36 1 3.3021 5.0091 -0.0750 37 1 2.9130 3.9092 2.1164 38 1 1.3010 0.7694 2.4937 39 1 0.6411 0.3243 4.7405 40 1 1.7917 -0.8990 4.1334 41 1 1.7221 -1.7007 6.3201 42 1 1.1547 -0.1283 6.9718 43 1 5.1563 -0.9247 6.1565 44 1 6.5275 1.0756 8.0621 45 1 4.4746 1.3437 5.6219 46 1 3.0148 1.9384 6.4686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434752943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:51 Heat of formation + Delta-G solvation = -96.031643 kcal Electronic energy + Delta-G solvation = -29528.216021 eV Core-core repulsion = 25417.598042 eV Total energy + Delta-G solvation = -4110.617979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24369 -41.13102 -39.55711 -38.73873 -36.15774 -35.87271 -34.97779 -34.21910 -32.60186 -31.69740 -30.18345 -29.47178 -28.06816 -26.93315 -25.36034 -24.72693 -23.65528 -22.56537 -21.49091 -21.09391 -19.72028 -19.13893 -18.90029 -18.30302 -17.70130 -17.09719 -17.03824 -16.86115 -16.27544 -16.17060 -15.68228 -15.54774 -15.13875 -14.90143 -14.69948 -14.66079 -14.57477 -14.28032 -13.90103 -13.80556 -13.52138 -13.28692 -13.20835 -12.86458 -12.77779 -12.55117 -12.46642 -12.32786 -12.29090 -12.19325 -12.07527 -11.96887 -11.53339 -11.41543 -11.18788 -10.82022 -10.66278 -10.46469 -10.30274 -9.55816 -8.88683 -8.23824 -6.40510 -0.00118 0.17106 1.39234 1.44417 1.47130 1.55744 1.98893 2.14000 2.38855 2.67842 2.88448 3.02807 3.11573 3.62150 3.79762 3.90551 4.04494 4.11387 4.19284 4.29078 4.33796 4.35414 4.40946 4.46417 4.49253 4.60226 4.63772 4.76721 4.77219 4.83833 4.96159 5.04507 5.08080 5.10063 5.11547 5.18295 5.26247 5.36398 5.39114 5.47936 5.56740 5.77309 5.97250 6.10772 6.21598 6.66816 6.74582 6.89147 7.28521 7.36324 7.39725 8.81217 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.002716 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.380582 B =10305.632704 C =11120.758788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C 0.145 3.855 4 N -0.522 5.522 5 C 0.294 3.706 6 O -0.318 6.318 7 C 0.037 3.963 8 C -0.179 4.179 9 C -0.055 4.055 10 C 0.076 3.924 11 N -0.659 5.659 12 C 0.711 3.289 13 O -0.622 6.622 14 N -0.625 5.625 15 C 0.101 3.899 16 C -0.110 4.110 17 C 0.231 3.769 18 O -0.587 6.587 19 C -0.552 4.552 20 H 0.070 0.930 21 C 0.026 3.974 22 N -0.915 5.915 23 Si 0.962 3.038 24 H -0.263 1.263 25 H -0.282 1.282 26 H -0.284 1.284 27 C 0.128 3.872 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.158 0.842 37 H 0.141 0.859 38 H 0.420 0.580 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.372 0.628 44 H 0.268 0.732 45 H 0.045 0.955 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.287 -0.056 -17.267 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C 0.005 3.995 4 N -0.246 5.246 5 C 0.114 3.886 6 O -0.225 6.225 7 C -0.058 4.058 8 C -0.200 4.200 9 C -0.083 4.083 10 C -0.022 4.022 11 N -0.309 5.309 12 C 0.414 3.586 13 O -0.503 6.503 14 N -0.361 5.361 15 C -0.021 4.021 16 C -0.147 4.147 17 C 0.191 3.809 18 O -0.394 6.394 19 C -0.591 4.591 20 H 0.088 0.912 21 C -0.175 4.175 22 N -0.554 5.554 23 Si 0.788 3.212 24 H -0.187 1.187 25 H -0.208 1.208 26 H -0.210 1.210 27 C 0.004 3.996 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.141 0.859 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.175 0.825 37 H 0.159 0.841 38 H 0.260 0.740 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.221 0.779 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.112 0.120 -18.323 21.964 hybrid contribution 1.206 0.802 1.952 2.431 sum -10.906 0.922 -16.371 19.693 Atomic orbital electron populations 1.21705 0.92159 1.03658 1.02200 1.20584 0.97900 0.88353 1.04447 1.21044 0.96374 0.96985 0.85080 1.67122 1.18430 1.09576 1.29467 1.19878 0.93449 0.88648 0.86628 1.86238 1.82317 1.41476 1.12485 1.23058 1.01636 0.96550 0.84542 1.21120 1.06797 1.02989 0.89055 1.21617 0.95029 0.92936 0.98682 1.18288 1.05779 0.92379 0.85770 1.42221 1.34485 1.46510 1.07688 1.15648 0.81491 0.81495 0.80003 1.90855 1.38781 1.37496 1.83153 1.47874 1.37980 1.38731 1.11469 1.22247 0.91635 0.89818 0.98409 1.22595 0.95254 1.02040 0.94852 1.19877 0.87306 0.83407 0.90304 1.86096 1.20256 1.48973 1.84091 1.21817 1.00296 1.44455 0.92494 0.91192 1.25815 0.95702 0.93590 1.02417 1.69844 1.05265 1.44253 1.36036 0.85443 0.78323 0.77411 0.80057 1.18665 1.20791 1.21023 1.22735 0.94171 1.00482 0.82188 0.89488 0.92602 0.92492 0.89785 0.88949 0.85942 0.92758 0.92206 0.82477 0.84102 0.74025 0.88698 0.90344 0.89432 0.89152 0.77916 0.92270 0.93593 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.89 71.98 0.71 -1.16 16 2 C -0.07 -1.36 5.69 29.85 0.17 -1.19 16 3 C 0.14 3.65 6.05 42.64 0.26 3.91 16 4 N -0.52 -13.59 9.12 -296.50 -2.70 -16.29 16 5 C 0.29 7.87 7.49 84.80 0.63 8.51 16 6 O -0.32 -7.50 10.48 -90.84 -0.95 -8.45 16 7 C 0.04 0.60 10.38 113.37 1.18 1.77 16 8 C -0.18 -4.89 10.03 22.45 0.23 -4.67 16 9 C -0.06 -1.71 8.80 22.56 0.20 -1.52 16 10 C 0.08 2.20 6.31 38.17 0.24 2.44 16 11 N -0.66 -18.85 4.72 -316.78 -1.49 -20.35 16 12 C 0.71 27.45 8.35 179.05 1.50 28.94 16 13 O -0.62 -29.17 14.04 -3.99 -0.06 -29.23 16 14 N -0.63 -24.04 3.33 -829.79 -2.76 -26.80 16 15 C 0.10 2.93 6.16 86.73 0.53 3.47 16 16 C -0.11 -3.82 6.13 31.79 0.19 -3.62 16 17 C 0.23 10.70 0.87 -10.16 -0.01 10.69 16 18 O -0.59 -29.10 13.16 -148.98 -1.96 -31.06 16 19 C -0.55 -27.80 8.27 25.60 0.21 -27.59 16 20 H 0.07 3.40 7.79 -2.91 -0.02 3.38 16 21 C 0.03 1.32 5.29 84.66 0.45 1.77 16 22 N -0.91 -49.29 10.69 21.45 0.23 -49.06 16 23 Si 0.96 41.15 29.54 68.60 2.03 43.18 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 27 C 0.13 6.04 5.38 86.85 0.47 6.51 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.74 7.86 -2.39 -0.02 0.72 16 31 H 0.08 1.49 7.14 -2.38 -0.02 1.48 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 36 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.14 4.94 6.27 -2.91 -0.02 4.92 16 38 H 0.42 9.06 6.55 -92.71 -0.61 8.45 16 39 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.09 2.92 8.03 -2.38 -0.02 2.90 16 43 H 0.37 19.64 7.56 -74.06 -0.56 19.08 16 44 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 45 H 0.05 2.54 7.33 -2.39 -0.02 2.52 16 46 H 0.04 2.15 8.03 -2.38 -0.02 2.13 16 Total: -1.00 -66.38 377.62 -0.86 -67.24 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.15 Total: 42.56 kcal Atomic # 6 Polarization: 21.31 SS G_CDS: 6.96 Total: 28.26 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -6.73 Total: -112.50 kcal Atomic # 8 Polarization: -65.77 SS G_CDS: -2.97 Total: -68.74 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -66.38 -0.86 -67.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434752943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.792 kcal (2) G-P(sol) polarization free energy of solvation -66.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds