Wall clock time and date at job start Tue Mar 31 2020 19:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34175 * 125.43704 * 2 1 4 4 C 1.47022 * 105.95417 * 180.14114 * 3 2 1 5 5 C 1.47376 * 127.19473 * 179.83121 * 4 3 2 6 6 O 1.21606 * 119.99926 * 359.71187 * 5 4 3 7 7 N 1.34774 * 119.99966 * 179.71003 * 5 4 3 8 8 C 1.46506 * 119.99952 * 179.97438 * 7 5 4 9 9 H 1.09002 * 112.84852 * 25.33640 * 8 7 5 10 10 C 1.53781 * 113.61361 * 156.53041 * 8 7 5 11 11 C 1.53781 * 87.08070 * 89.11956 * 10 8 7 12 12 H 1.08998 * 113.61172 * 270.88476 * 11 10 8 13 13 C 1.52993 * 113.61492 * 140.06794 * 11 10 8 14 14 N 1.46902 * 109.47234 * 175.00020 * 13 11 10 15 15 C 1.46896 * 110.99982 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47380 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99246 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00143 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99435 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00437 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99240 * 179.97438 * 19 18 16 22 22 N 1.31402 * 120.00384 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99403 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47114 * 60.00502 * 23 21 19 25 25 H 1.48499 * 109.46701 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47291 * 300.00139 * 23 21 19 27 27 C 1.53773 * 113.61686 * 254.13880 * 8 7 5 28 28 C 1.36421 * 105.61475 * 359.57320 * 4 3 2 29 29 O 1.33652 * 108.39399 * 0.26004 * 28 4 3 30 30 H 1.08999 * 109.47578 * 180.36043 * 1 2 3 31 31 H 1.09004 * 109.47319 * 300.36632 * 1 2 3 32 32 H 1.08999 * 109.46742 * 60.36481 * 1 2 3 33 33 H 1.08000 * 127.02398 * 359.97438 * 3 2 1 34 34 H 0.96997 * 120.00341 * 359.97438 * 7 5 4 35 35 H 1.09001 * 113.61158 * 203.66864 * 10 8 7 36 36 H 1.08998 * 113.61196 * 334.56885 * 10 8 7 37 37 H 1.09002 * 109.46900 * 294.99582 * 13 11 10 38 38 H 1.08998 * 109.47474 * 54.99773 * 13 11 10 39 39 H 1.00893 * 110.99685 * 56.04399 * 14 13 11 40 40 H 1.08997 * 109.47495 * 299.99938 * 15 14 13 41 41 H 1.09004 * 109.47210 * 59.99657 * 15 14 13 42 42 H 0.96998 * 120.00115 * 359.97438 * 18 16 15 43 43 H 0.97007 * 120.00390 * 179.97438 * 22 21 19 44 44 H 1.09007 * 113.61678 * 25.42910 * 27 8 7 45 45 H 1.09000 * 113.61916 * 156.33583 * 27 8 7 46 46 H 1.07996 * 125.80316 * 180.26153 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0035 5 6 4.9024 1.4125 -0.0083 6 8 4.8319 2.6264 -0.0150 7 7 6.1067 0.8074 -0.0051 8 6 7.3309 1.6122 -0.0104 9 1 7.1860 2.6059 0.4135 10 6 8.5559 0.8740 0.5546 11 6 8.8156 0.3731 -0.8759 12 1 8.3107 -0.5645 -1.1086 13 6 10.2959 0.3624 -1.2623 14 7 10.4504 -0.2403 -2.5930 15 6 11.8621 -0.2669 -2.9982 16 6 11.9809 -0.8911 -4.3648 17 8 10.9871 -1.2763 -4.9438 18 7 13.1912 -1.0221 -4.9429 19 6 13.2992 -1.5905 -6.1859 20 1 12.4143 -1.9328 -6.7019 21 6 14.5470 -1.7251 -6.7821 22 7 15.6236 -1.3082 -6.1545 23 14 14.6942 -2.5001 -8.4754 24 1 13.9131 -1.7025 -9.4545 25 1 16.1214 -2.5274 -8.8849 26 1 14.1655 -3.8871 -8.4327 27 6 8.0566 1.6208 -1.3661 28 6 3.5790 -0.7582 0.0045 29 8 2.2852 -1.0935 0.0065 30 1 -0.3634 -1.0276 0.0065 31 1 -0.3634 0.5195 0.8867 32 1 -0.3633 0.5082 -0.8932 33 1 1.9595 2.1230 -0.0004 34 1 6.1630 -0.1609 0.0006 35 1 9.3317 1.5405 0.9315 36 1 8.3015 0.0794 1.2561 37 1 10.6740 1.3846 -1.2803 38 1 10.8578 -0.2200 -0.5322 39 1 9.8873 0.2433 -3.2765 40 1 12.2507 0.7510 -3.0284 41 1 12.4352 -0.8535 -2.2802 42 1 13.9859 -0.7144 -4.4796 43 1 16.4948 -1.4025 -6.5706 44 1 7.3996 1.4286 -2.2144 45 1 8.6963 2.4909 -1.5135 46 1 4.4103 -1.4476 0.0087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485681729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:07 Heat of formation + Delta-G solvation = -40.690278 kcal Electronic energy + Delta-G solvation = -27038.212492 eV Core-core repulsion = 22929.994295 eV Total energy + Delta-G solvation = -4108.218197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.97195 -40.41436 -38.64180 -38.10702 -35.23299 -33.92074 -33.61228 -33.35168 -32.10657 -31.21029 -28.59906 -27.12193 -26.01367 -25.66859 -24.42190 -23.48566 -21.98334 -21.50554 -20.32540 -19.56030 -19.10244 -18.07846 -17.87692 -16.75824 -16.70214 -16.29817 -16.07197 -15.55392 -15.27855 -15.00402 -14.69510 -14.49506 -14.14961 -14.01876 -13.65533 -13.64033 -13.60828 -13.50022 -13.19782 -13.05042 -12.94276 -12.64856 -12.32517 -12.24486 -11.73002 -11.55501 -11.49591 -11.05570 -10.96990 -10.65651 -10.43848 -10.32638 -10.28418 -10.20013 -10.16794 -9.49443 -9.33087 -8.99568 -8.45048 -8.04226 -7.95058 -6.41062 -3.81953 0.94493 1.63558 2.39134 2.76467 3.04522 3.20590 3.26106 3.30616 3.91921 4.06408 4.08141 4.23715 4.25275 4.28550 4.52869 4.54196 4.65294 4.82317 4.84096 4.97597 5.03870 5.14449 5.17226 5.25936 5.32674 5.35012 5.44885 5.48877 5.52562 5.56243 5.60334 5.71950 5.79963 5.87730 5.93501 5.98315 6.00294 6.05493 6.27696 6.38652 6.57884 7.17613 7.25018 7.55476 7.69226 7.91853 8.06949 8.62174 9.18441 9.55137 10.06806 10.76591 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.001636 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.713248 B =17112.694454 C =18185.505720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.014 4.014 3 C -0.164 4.164 4 C -0.232 4.232 5 C 0.590 3.410 6 O -0.535 6.535 7 N -0.708 5.708 8 C 0.121 3.879 9 H 0.102 0.898 10 C -0.139 4.139 11 C -0.106 4.106 12 H 0.099 0.901 13 C 0.068 3.932 14 N -0.669 5.669 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.301 4.301 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.151 4.151 28 C 0.022 3.978 29 O -0.172 6.172 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.399 0.601 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.071 0.929 39 H 0.349 0.651 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.698 4.022 18.212 29.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.063 4.063 3 C -0.183 4.183 4 C -0.236 4.236 5 C 0.378 3.622 6 O -0.412 6.412 7 N -0.359 5.359 8 C 0.016 3.984 9 H 0.120 0.880 10 C -0.177 4.177 11 C -0.124 4.124 12 H 0.117 0.883 13 C -0.061 4.061 14 N -0.301 5.301 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.189 4.189 28 C -0.049 4.049 29 O -0.067 6.067 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.177 0.823 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.168 0.832 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -23.322 3.716 17.988 29.687 hybrid contribution 1.212 0.382 -0.811 1.508 sum -22.110 4.097 17.177 28.296 Atomic orbital electron populations 1.20354 0.84555 1.04280 1.03934 1.22356 0.94228 0.83547 1.06153 1.22472 0.89893 0.99807 1.06151 1.21481 0.94672 0.93281 1.14214 1.17256 0.82134 0.87095 0.75709 1.90789 1.87064 1.13685 1.49661 1.45505 1.04903 1.09960 1.75492 1.21835 0.82987 0.95880 0.97715 0.87993 1.23339 0.97025 1.00403 0.96944 1.22677 0.95992 0.98648 0.95114 0.88271 1.21948 0.95226 0.96952 0.92016 1.60093 1.07881 1.58707 1.03398 1.21672 0.90220 0.99368 0.97005 1.19832 0.84413 0.85551 0.87611 1.90518 1.36733 1.54131 1.65418 1.41859 1.06824 1.53928 1.17435 1.19664 0.94481 1.35747 0.93136 0.87984 1.25256 0.94819 0.97769 1.00043 1.69601 0.98604 1.47143 1.38988 0.85916 0.77000 0.79642 0.81642 1.19931 1.20974 1.19897 1.23581 0.99183 0.98676 0.97480 1.24434 0.84415 0.95346 1.00680 1.83746 1.16438 1.35586 1.70963 0.90319 0.89439 0.89385 0.82323 0.76611 0.88547 0.90773 0.95366 0.91035 0.83212 0.93972 0.89671 0.77462 0.91831 0.90810 0.89152 0.77131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.40 36.01 0.37 0.08 16 2 C -0.01 -0.11 7.28 -35.74 -0.26 -0.37 16 3 C -0.16 -1.50 10.90 -37.45 -0.41 -1.91 16 4 C -0.23 -2.23 6.31 -103.27 -0.65 -2.88 16 5 C 0.59 6.65 7.81 -12.54 -0.10 6.55 16 6 O -0.53 -8.07 16.60 5.27 0.09 -7.99 16 7 N -0.71 -6.06 5.26 -54.11 -0.28 -6.34 16 8 C 0.12 1.09 4.30 -67.12 -0.29 0.80 16 9 H 0.10 1.04 7.50 -51.93 -0.39 0.65 16 10 C -0.14 -1.02 7.38 -25.92 -0.19 -1.21 16 11 C -0.11 -1.00 3.79 -89.67 -0.34 -1.34 16 12 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 13 C 0.07 0.79 5.53 -3.83 -0.02 0.77 16 14 N -0.67 -10.64 6.13 -115.06 -0.70 -11.34 16 15 C 0.05 0.89 6.17 -4.98 -0.03 0.85 16 16 C 0.44 10.49 7.82 -10.99 -0.09 10.40 16 17 O -0.58 -15.99 15.78 5.55 0.09 -15.91 16 18 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 19 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 23 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C -0.15 -1.47 7.45 -25.78 -0.19 -1.67 16 28 C 0.02 0.15 11.61 30.08 0.35 0.50 16 29 O -0.17 -1.39 10.52 7.66 0.08 -1.31 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.40 2.36 7.67 -40.82 -0.31 2.05 16 35 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.03 0.31 7.85 -51.93 -0.41 -0.10 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.35 5.84 8.43 -39.30 -0.33 5.51 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 45 H 0.09 0.86 7.91 -51.93 -0.41 0.45 16 46 H 0.21 0.65 7.47 -52.49 -0.39 0.26 16 LS Contribution 395.06 15.07 5.95 5.95 Total: -1.00 -35.53 395.06 -7.95 -43.48 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -6.73 Total: 13.18 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.08 Total: 2.50 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.32 Total: -56.02 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.26 Total: -25.21 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.53 -7.95 -43.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485681729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.786 kcal (2) G-P(sol) polarization free energy of solvation -35.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds