Wall clock time and date at job start Tue Mar 31 2020 19:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34175 * 125.43704 * 2 1 4 4 C 1.47022 * 105.95417 * 180.14114 * 3 2 1 5 5 C 1.47376 * 127.19473 * 179.83121 * 4 3 2 6 6 O 1.21606 * 119.99926 * 359.71187 * 5 4 3 7 7 N 1.34774 * 119.99966 * 179.71003 * 5 4 3 8 8 C 1.46506 * 119.99952 * 179.97438 * 7 5 4 9 9 H 1.09002 * 112.84852 * 25.33640 * 8 7 5 10 10 C 1.53781 * 113.61361 * 156.53041 * 8 7 5 11 11 C 1.53781 * 87.08070 * 89.11956 * 10 8 7 12 12 H 1.08998 * 113.61172 * 270.88476 * 11 10 8 13 13 C 1.52993 * 113.61492 * 140.06794 * 11 10 8 14 14 N 1.46902 * 109.47234 * 175.00020 * 13 11 10 15 15 C 1.46896 * 110.99982 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47380 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99246 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00143 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99435 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00437 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99240 * 179.97438 * 19 18 16 22 22 N 1.31402 * 120.00384 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99403 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47114 * 60.00502 * 23 21 19 25 25 H 1.48499 * 109.46701 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47291 * 300.00139 * 23 21 19 27 27 C 1.53773 * 113.61686 * 254.13880 * 8 7 5 28 28 C 1.36421 * 105.61475 * 359.57320 * 4 3 2 29 29 O 1.33652 * 108.39399 * 0.26004 * 28 4 3 30 30 H 1.08999 * 109.47578 * 180.36043 * 1 2 3 31 31 H 1.09004 * 109.47319 * 300.36632 * 1 2 3 32 32 H 1.08999 * 109.46742 * 60.36481 * 1 2 3 33 33 H 1.08000 * 127.02398 * 359.97438 * 3 2 1 34 34 H 0.96997 * 120.00341 * 359.97438 * 7 5 4 35 35 H 1.09001 * 113.61158 * 203.66864 * 10 8 7 36 36 H 1.08998 * 113.61196 * 334.56885 * 10 8 7 37 37 H 1.09002 * 109.46900 * 294.99582 * 13 11 10 38 38 H 1.08998 * 109.47474 * 54.99773 * 13 11 10 39 39 H 1.00893 * 110.99685 * 56.04399 * 14 13 11 40 40 H 1.08997 * 109.47495 * 299.99938 * 15 14 13 41 41 H 1.09004 * 109.47210 * 59.99657 * 15 14 13 42 42 H 0.96998 * 120.00115 * 359.97438 * 18 16 15 43 43 H 0.97007 * 120.00390 * 179.97438 * 22 21 19 44 44 H 1.09007 * 113.61678 * 25.42910 * 27 8 7 45 45 H 1.09000 * 113.61916 * 156.33583 * 27 8 7 46 46 H 1.07996 * 125.80316 * 180.26153 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0035 5 6 4.9024 1.4125 -0.0083 6 8 4.8319 2.6264 -0.0150 7 7 6.1067 0.8074 -0.0051 8 6 7.3309 1.6122 -0.0104 9 1 7.1860 2.6059 0.4135 10 6 8.5559 0.8740 0.5546 11 6 8.8156 0.3731 -0.8759 12 1 8.3107 -0.5645 -1.1086 13 6 10.2959 0.3624 -1.2623 14 7 10.4504 -0.2403 -2.5930 15 6 11.8621 -0.2669 -2.9982 16 6 11.9809 -0.8911 -4.3648 17 8 10.9871 -1.2763 -4.9438 18 7 13.1912 -1.0221 -4.9429 19 6 13.2992 -1.5905 -6.1859 20 1 12.4143 -1.9328 -6.7019 21 6 14.5470 -1.7251 -6.7821 22 7 15.6236 -1.3082 -6.1545 23 14 14.6942 -2.5001 -8.4754 24 1 13.9131 -1.7025 -9.4545 25 1 16.1214 -2.5274 -8.8849 26 1 14.1655 -3.8871 -8.4327 27 6 8.0566 1.6208 -1.3661 28 6 3.5790 -0.7582 0.0045 29 8 2.2852 -1.0935 0.0065 30 1 -0.3634 -1.0276 0.0065 31 1 -0.3634 0.5195 0.8867 32 1 -0.3633 0.5082 -0.8932 33 1 1.9595 2.1230 -0.0004 34 1 6.1630 -0.1609 0.0006 35 1 9.3317 1.5405 0.9315 36 1 8.3015 0.0794 1.2561 37 1 10.6740 1.3846 -1.2803 38 1 10.8578 -0.2200 -0.5322 39 1 9.8873 0.2433 -3.2765 40 1 12.2507 0.7510 -3.0284 41 1 12.4352 -0.8535 -2.2802 42 1 13.9859 -0.7144 -4.4796 43 1 16.4948 -1.4025 -6.5706 44 1 7.3996 1.4286 -2.2144 45 1 8.6963 2.4909 -1.5135 46 1 4.4103 -1.4476 0.0087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485681729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:06 Heat of formation + Delta-G solvation = -67.684428 kcal Electronic energy + Delta-G solvation = -27039.383046 eV Core-core repulsion = 22929.994295 eV Total energy + Delta-G solvation = -4109.388751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.58193 -41.21544 -40.14542 -39.34942 -36.53789 -35.77555 -34.53066 -33.98117 -33.26264 -32.68830 -29.80224 -27.72937 -27.20603 -26.64443 -25.62004 -24.64277 -22.88067 -22.15571 -21.14175 -21.00401 -20.19995 -19.86538 -18.65655 -17.93557 -17.38228 -17.32751 -17.05272 -16.86372 -16.46750 -16.16449 -15.89417 -15.78175 -15.40407 -15.31503 -14.95097 -14.53403 -14.31505 -14.13396 -13.98245 -13.81593 -13.79188 -13.67821 -13.49361 -13.35041 -13.08414 -12.84297 -12.71711 -12.57064 -12.43619 -12.12703 -11.84052 -11.50448 -11.45219 -11.22321 -11.07218 -10.88169 -10.33994 -10.11114 -10.01759 -9.56611 -9.29360 -8.46589 -5.95590 0.29907 0.99398 1.39903 1.41778 1.52736 1.85599 2.05584 2.06031 2.25441 2.29370 2.94378 3.20645 3.50344 3.52707 3.58135 3.63293 3.76255 3.90103 3.97949 4.01477 4.33828 4.37441 4.46041 4.48465 4.52436 4.57047 4.70713 4.72535 4.72878 4.79473 4.82501 4.86863 4.88679 4.91563 5.06779 5.09633 5.19448 5.27440 5.37490 5.40506 5.63149 5.91242 5.98335 6.14069 6.43120 6.47487 6.60335 7.12429 7.13825 7.56334 8.11799 8.70467 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.001636 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.713248 B =17112.694454 C =18185.505720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.195 4.195 4 C -0.266 4.266 5 C 0.588 3.412 6 O -0.585 6.585 7 N -0.694 5.694 8 C 0.118 3.882 9 H 0.088 0.912 10 C -0.117 4.117 11 C -0.100 4.100 12 H 0.096 0.904 13 C 0.069 3.931 14 N -0.682 5.682 15 C 0.064 3.936 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.337 4.337 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.272 1.272 27 C -0.153 4.153 28 C 0.044 3.956 29 O -0.177 6.177 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.153 0.847 34 H 0.414 0.586 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.341 0.659 40 H 0.064 0.936 41 H 0.105 0.895 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.479 2.896 19.299 29.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.058 4.058 3 C -0.214 4.214 4 C -0.270 4.270 5 C 0.377 3.623 6 O -0.466 6.466 7 N -0.345 5.345 8 C 0.012 3.988 9 H 0.106 0.894 10 C -0.155 4.155 11 C -0.119 4.119 12 H 0.114 0.886 13 C -0.059 4.059 14 N -0.314 5.314 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.467 4.467 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.192 4.192 28 C -0.026 4.026 29 O -0.073 6.073 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.171 0.829 34 H 0.251 0.749 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.159 0.841 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -23.079 2.565 19.111 30.074 hybrid contribution 1.103 0.733 -1.127 1.739 sum -21.976 3.298 17.984 28.588 Atomic orbital electron populations 1.20536 0.82094 1.05380 1.05113 1.22909 0.95566 0.82831 1.04497 1.22615 0.90470 1.00297 1.08054 1.21502 0.94187 0.94473 1.16858 1.17554 0.83193 0.86654 0.74878 1.90753 1.87777 1.15758 1.52326 1.45399 1.04137 1.10708 1.74228 1.21836 0.83631 0.95857 0.97442 0.89407 1.23261 0.95892 1.00544 0.95841 1.22607 0.94547 0.98146 0.96590 0.88605 1.22070 0.96708 0.97421 0.89748 1.60125 1.06524 1.59811 1.04971 1.21543 0.91954 1.00091 0.93236 1.20946 0.83145 0.84164 0.89384 1.90485 1.37916 1.55600 1.67111 1.41932 1.07694 1.54326 1.17064 1.19647 0.94364 1.37906 0.94770 0.90361 1.26030 0.94082 0.97638 1.03392 1.69661 0.98970 1.47129 1.40251 0.84992 0.77581 0.78598 0.77175 1.19780 1.19411 1.19713 1.23600 0.99224 0.99194 0.97195 1.25096 0.84919 0.94911 0.97722 1.83784 1.16885 1.35808 1.70806 0.89196 0.88042 0.88354 0.82904 0.74872 0.87202 0.88914 0.94270 0.89858 0.84126 0.91833 0.87666 0.76951 0.91271 0.92715 0.88963 0.73343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.40 71.24 0.74 0.25 16 2 C -0.01 -0.14 7.28 24.76 0.18 0.04 16 3 C -0.19 -3.69 10.90 23.65 0.26 -3.44 16 4 C -0.27 -5.11 6.31 -18.99 -0.12 -5.23 16 5 C 0.59 13.56 7.81 86.65 0.68 14.24 16 6 O -0.58 -18.68 16.60 -4.05 -0.07 -18.75 16 7 N -0.69 -11.33 5.26 -443.36 -2.33 -13.66 16 8 C 0.12 2.01 4.30 45.51 0.20 2.21 16 9 H 0.09 1.80 7.50 -2.39 -0.02 1.79 16 10 C -0.12 -1.40 7.38 31.12 0.23 -1.17 16 11 C -0.10 -1.69 3.79 -10.18 -0.04 -1.73 16 12 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 13 C 0.07 1.42 5.53 86.30 0.48 1.89 16 14 N -0.68 -20.74 6.13 -517.94 -3.17 -23.92 16 15 C 0.06 2.17 6.17 85.56 0.53 2.69 16 16 C 0.44 20.83 7.82 87.66 0.69 21.51 16 17 O -0.62 -34.87 15.78 -3.07 -0.05 -34.92 16 18 N -0.57 -29.53 5.29 -306.98 -1.62 -31.15 16 19 C -0.34 -19.29 9.68 84.04 0.81 -18.47 16 20 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 22 N -0.92 -49.57 13.05 21.66 0.28 -49.29 16 23 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 C -0.15 -2.92 7.45 31.21 0.23 -2.68 16 28 C 0.04 0.55 11.61 67.40 0.78 1.33 16 29 O -0.18 -2.61 10.52 4.48 0.05 -2.56 16 30 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.41 4.10 7.67 -92.71 -0.71 3.39 16 35 H 0.11 1.10 8.10 -2.39 -0.02 1.08 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.04 0.75 7.85 -2.39 -0.02 0.73 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.34 11.26 8.43 -89.70 -0.76 10.51 16 40 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 42 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 43 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 44 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.09 1.71 7.91 -2.39 -0.02 1.69 16 46 H 0.25 0.77 7.47 -2.91 -0.02 0.75 16 Total: -1.00 -79.26 395.06 0.06 -79.20 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: -1.17 Total: 38.75 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 6.11 Total: 11.29 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -6.84 Total: -118.02 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -0.07 Total: -56.23 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -79.26 0.06 -79.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485681729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.518 kcal (2) G-P(sol) polarization free energy of solvation -79.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds