Wall clock time and date at job start Tue Mar 31 2020 19:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31782 * 122.74819 * 2 1 4 4 C 1.29028 * 117.12305 * 180.02562 * 3 2 1 5 5 C 1.50700 * 124.91743 * 179.97438 * 4 3 2 6 6 N 1.46508 * 109.46736 * 84.99978 * 5 4 3 7 7 C 1.36737 * 127.13063 * 95.04203 * 6 5 4 8 8 C 1.50701 * 126.34820 * 359.94011 * 7 6 5 9 9 N 1.30292 * 107.30318 * 179.97438 * 7 6 5 10 10 N 1.28524 * 110.05290 * 359.97438 * 9 7 6 11 11 C 1.31215 * 109.86085 * 359.74901 * 10 9 7 12 12 N 1.38581 * 126.47240 * 180.25692 * 11 10 9 13 13 C 1.46895 * 111.00166 * 306.19633 * 12 11 10 14 14 C 1.46903 * 111.00036 * 70.15531 * 12 11 10 15 15 H 1.08997 * 109.47691 * 54.99574 * 14 12 11 16 16 C 1.53003 * 109.46545 * 294.99304 * 14 12 11 17 17 C 1.50702 * 109.47186 * 175.00194 * 14 12 11 18 18 H 1.08002 * 120.00358 * 95.33923 * 17 14 12 19 19 C 1.37885 * 119.99544 * 275.34044 * 17 14 12 20 20 N 1.31513 * 119.99805 * 185.26517 * 19 17 14 21 21 Si 1.86801 * 120.00008 * 5.27077 * 19 17 14 22 22 H 1.48500 * 109.47128 * 94.48764 * 21 19 17 23 23 H 1.48498 * 109.46919 * 214.48711 * 21 19 17 24 24 H 1.48498 * 109.46825 * 334.48843 * 21 19 17 25 25 S 1.70975 * 110.16662 * 0.02562 * 4 3 2 26 26 C 1.33639 * 122.74845 * 180.02562 * 2 1 3 27 27 C 1.50697 * 126.04104 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.47690 * 89.97442 * 1 2 3 29 29 H 1.09006 * 109.46849 * 209.97609 * 1 2 3 30 30 H 1.08998 * 109.47141 * 329.96993 * 1 2 3 31 31 H 1.08992 * 109.47329 * 205.00407 * 5 4 3 32 32 H 1.09000 * 109.47214 * 325.01061 * 5 4 3 33 33 H 1.08997 * 109.47189 * 90.00491 * 8 7 6 34 34 H 1.09001 * 109.47001 * 210.00064 * 8 7 6 35 35 H 1.08997 * 109.47333 * 329.99864 * 8 7 6 36 36 H 1.09003 * 109.47549 * 54.69611 * 13 12 11 37 37 H 1.09004 * 109.47319 * 174.69934 * 13 12 11 38 38 H 1.08999 * 109.47276 * 294.69431 * 13 12 11 39 39 H 1.08992 * 109.47495 * 305.22610 * 16 14 12 40 40 H 1.09004 * 109.46871 * 65.23053 * 16 14 12 41 41 H 1.09005 * 109.46788 * 185.22328 * 16 14 12 42 42 H 0.96994 * 119.99890 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.47294 * 180.02562 * 27 26 2 44 44 H 1.09004 * 109.47106 * 300.02632 * 27 26 2 45 45 H 1.09007 * 109.47205 * 60.02387 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 -0.0005 5 6 4.4835 2.1271 -0.0012 6 7 4.7100 2.5767 1.3747 7 6 5.7205 2.1936 2.2125 8 6 6.8237 1.2178 1.8934 9 7 5.5523 2.8281 3.3380 10 7 4.5127 3.5806 3.2686 11 6 3.9603 3.4695 2.0836 12 7 2.8273 4.1313 1.6375 13 6 1.7005 3.9242 2.5568 14 6 3.0948 5.5631 1.4467 15 1 3.9453 5.6878 0.7766 16 6 3.4115 6.2071 2.7980 17 6 1.8813 6.2253 0.8469 18 1 1.1611 6.7140 1.4865 19 6 1.6903 6.2073 -0.5185 20 7 0.6885 6.8723 -1.0512 21 14 2.8545 5.2382 -1.6117 22 1 2.2904 3.8873 -1.8607 23 1 3.0264 5.9488 -2.9043 24 1 4.1720 5.1082 -0.9391 25 16 3.9332 -0.6731 -0.0018 26 6 2.2299 -1.1240 -0.0005 27 6 1.6847 -2.5289 -0.0006 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 5.4272 1.7978 -0.4358 32 1 4.0796 2.9503 -0.5904 33 1 7.6715 1.7544 1.4677 34 1 7.1359 0.7111 2.8066 35 1 6.4616 0.4821 1.1753 36 1 1.9945 4.2184 3.5643 37 1 0.8527 4.5289 2.2346 38 1 1.4178 2.8715 2.5537 39 1 2.6006 6.0027 3.4970 40 1 4.3412 5.7932 3.1888 41 1 3.5187 7.2844 2.6708 42 1 0.5544 6.8599 -2.0118 43 1 2.5113 -3.2394 -0.0006 44 1 1.0742 -2.6817 0.8894 45 1 1.0742 -2.6817 -0.8906 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001510418568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:35 Heat of formation + Delta-G solvation = 118.720783 kcal Electronic energy + Delta-G solvation = -28215.218031 eV Core-core repulsion = 24588.958039 eV Total energy + Delta-G solvation = -3626.259992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.01631 -41.02296 -39.07556 -36.70716 -34.72691 -34.10013 -32.91796 -31.46580 -30.83230 -29.58669 -28.41149 -27.48695 -26.78291 -25.99077 -24.31289 -22.92661 -21.91500 -21.12241 -19.95434 -19.15696 -19.02159 -18.14722 -17.52783 -17.15967 -16.55472 -16.08414 -15.87180 -15.51923 -15.44424 -15.05696 -14.70829 -14.59719 -14.48060 -13.95036 -13.81649 -13.80131 -13.70220 -13.60116 -13.52622 -13.38027 -13.27494 -12.99802 -12.94152 -12.76698 -12.66376 -12.44990 -12.10803 -12.00877 -11.73929 -11.49668 -11.40428 -11.14310 -10.86965 -10.53602 -10.24970 -9.96592 -9.68929 -9.39794 -8.34413 -6.41871 -0.51950 0.20251 0.56228 0.71664 1.20854 1.25914 1.38654 1.39431 1.78630 1.82198 2.33202 2.77417 2.86190 3.32556 3.43918 3.47226 3.78480 3.95154 4.02917 4.06120 4.10594 4.11595 4.36468 4.45918 4.57174 4.60551 4.64058 4.65964 4.72797 4.75712 4.79166 4.81306 4.86288 4.94120 4.94677 4.98201 5.02927 5.03795 5.16901 5.32631 5.33436 5.51498 5.70946 5.97207 6.23132 6.55097 6.71489 6.77648 7.28666 7.71498 8.79435 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.005952 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.660878 B = 4703.301288 C = 6061.852853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.027 3.973 3 N -0.466 5.466 4 C -0.016 4.016 5 C 0.184 3.816 6 N -0.470 5.470 7 C 0.179 3.821 8 C -0.061 4.061 9 N -0.327 5.327 10 N -0.344 5.344 11 C 0.362 3.638 12 N -0.465 5.465 13 C 0.070 3.930 14 C 0.185 3.815 15 H 0.039 0.961 16 C -0.152 4.152 17 C -0.495 4.495 18 H 0.044 0.956 19 C 0.040 3.960 20 N -0.932 5.932 21 Si 0.945 3.055 22 H -0.266 1.266 23 H -0.295 1.295 24 H -0.254 1.254 25 S 0.189 5.811 26 C -0.209 4.209 27 C -0.073 4.073 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.267 0.733 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.988 -23.774 -1.671 25.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 N -0.181 5.181 4 C -0.294 4.294 5 C 0.058 3.942 6 N -0.165 5.165 7 C -0.089 4.089 8 C -0.120 4.120 9 N -0.166 5.166 10 N -0.187 5.187 11 C 0.005 3.995 12 N -0.192 5.192 13 C -0.077 4.077 14 C 0.081 3.919 15 H 0.057 0.943 16 C -0.211 4.211 17 C -0.534 4.534 18 H 0.062 0.938 19 C -0.161 4.161 20 N -0.570 5.570 21 Si 0.772 3.228 22 H -0.191 1.191 23 H -0.222 1.222 24 H -0.179 1.179 25 S 0.444 5.556 26 C -0.330 4.330 27 C -0.132 4.132 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.174 0.826 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.761 -23.438 -0.866 25.404 hybrid contribution -1.231 0.565 -1.168 1.789 sum 8.530 -22.873 -2.034 24.496 Atomic orbital electron populations 1.20396 0.86093 1.03577 1.03369 1.20609 0.99402 0.86159 1.04338 1.66109 1.05574 1.33577 1.12872 1.26691 0.94205 0.99320 1.09161 1.20442 0.99004 0.94425 0.80320 1.46517 1.22750 1.33376 1.13897 1.25795 0.93942 1.01972 0.87181 1.20499 0.91923 0.94483 1.05105 1.73868 1.12743 1.09412 1.20614 1.74605 1.06450 1.20322 1.17307 1.23033 0.94668 0.93900 0.87922 1.59792 0.99938 1.13461 1.45970 1.21874 0.92798 1.00096 0.92959 1.19831 0.96356 0.81429 0.94318 0.94306 1.22208 1.00555 1.00497 0.97879 1.20860 1.07625 1.32877 0.92054 0.93763 1.25715 0.96419 0.94498 0.99496 1.70026 1.32187 1.42367 1.12462 0.85819 0.80441 0.79487 0.77067 1.19097 1.22157 1.17909 1.83198 1.06462 0.98949 1.66990 1.26383 0.95061 1.02208 1.09369 1.20429 1.01915 0.86356 1.04492 0.90088 0.88008 0.92730 0.82602 0.88910 0.87188 0.87139 0.88984 0.94968 0.90790 0.93363 0.93357 0.93184 0.92855 0.92376 0.89483 0.88990 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 10.06 71.24 0.72 -1.03 16 2 C 0.03 0.74 6.74 41.52 0.28 1.02 16 3 N -0.47 -16.26 10.53 -179.40 -1.89 -18.15 16 4 C -0.02 -0.48 6.97 88.52 0.62 0.14 16 5 C 0.18 5.50 6.53 85.63 0.56 6.06 16 6 N -0.47 -16.30 2.79 -518.91 -1.45 -17.75 16 7 C 0.18 5.42 8.07 137.64 1.11 6.53 16 8 C -0.06 -0.99 10.05 71.24 0.72 -0.27 16 9 N -0.33 -12.56 12.18 -49.54 -0.60 -13.16 16 10 N -0.34 -15.00 9.82 -58.01 -0.57 -15.57 16 11 C 0.36 15.32 6.21 260.12 1.62 16.94 16 12 N -0.47 -21.35 4.29 -711.00 -3.05 -24.40 16 13 C 0.07 3.13 8.69 127.69 1.11 4.24 16 14 C 0.18 9.14 1.69 44.17 0.07 9.22 16 15 H 0.04 1.99 5.63 -2.39 -0.01 1.98 16 16 C -0.15 -7.00 8.38 71.98 0.60 -6.39 16 17 C -0.50 -28.11 7.58 25.60 0.19 -27.91 16 18 H 0.04 2.75 8.05 -2.91 -0.02 2.73 16 19 C 0.04 2.29 5.47 84.66 0.46 2.75 16 20 N -0.93 -57.27 13.96 21.45 0.30 -56.97 16 21 Si 0.94 45.83 25.27 68.60 1.73 47.56 16 22 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 23 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.25 -11.57 5.64 99.48 0.56 -11.01 16 25 S 0.19 3.64 23.18 -56.49 -1.31 2.33 16 26 C -0.21 -4.26 6.59 24.64 0.16 -4.10 16 27 C -0.07 -0.82 9.56 71.24 0.68 -0.13 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 29 H 0.10 1.64 7.46 -2.38 -0.02 1.63 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.16 2.95 7.63 -2.39 -0.02 2.94 16 32 H 0.09 3.39 5.41 -2.39 -0.01 3.37 16 33 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.09 1.07 7.78 -2.39 -0.02 1.05 16 36 H 0.03 1.40 6.43 -2.39 -0.02 1.39 16 37 H 0.07 3.54 6.83 -2.38 -0.02 3.53 16 38 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 2.19 6.32 -2.39 -0.02 2.17 16 40 H 0.05 2.26 6.25 -2.38 -0.01 2.25 16 41 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 42 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.09 0.88 8.00 -2.38 -0.02 0.86 16 45 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -78.03 373.68 2.93 -75.10 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.86 Total: 13.95 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 8.90 Total: 7.06 kcal Atomic # 7 Polarization: -138.74 SS G_CDS: -7.26 Total: -146.00 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.73 Total: 47.56 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.31 Total: 2.33 kcal Total: -78.03 2.93 -75.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510418568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.823 kcal (2) G-P(sol) polarization free energy of solvation -78.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds