Wall clock time and date at job start Tue Mar 31 2020 19:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31775 * 122.75181 * 2 1 4 4 C 1.29026 * 117.12520 * 180.02562 * 3 2 1 5 5 C 1.50706 * 124.91448 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47256 * 85.09600 * 5 4 3 7 7 C 1.36739 * 127.13785 * 94.98910 * 6 5 4 8 8 C 1.50701 * 126.34716 * 359.94776 * 7 6 5 9 9 N 1.30285 * 107.30769 * 179.97438 * 7 6 5 10 10 N 1.28528 * 110.05460 * 0.02562 * 9 7 6 11 11 C 1.31220 * 109.85717 * 359.74343 * 10 9 7 12 12 N 1.38588 * 126.47243 * 180.26062 * 11 10 9 13 13 C 1.46895 * 110.99548 * 295.79122 * 12 11 10 14 14 C 1.46892 * 110.99944 * 59.74565 * 12 11 10 15 15 H 1.08999 * 109.47652 * 299.99880 * 14 12 11 16 16 C 1.53005 * 109.47354 * 60.00011 * 14 12 11 17 17 C 1.50702 * 109.47329 * 180.02562 * 14 12 11 18 18 H 1.08000 * 119.99289 * 359.97438 * 17 14 12 19 19 C 1.37868 * 120.00370 * 180.02562 * 17 14 12 20 20 N 1.31513 * 120.00294 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99991 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47350 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47297 * 119.99771 * 21 19 17 24 24 H 1.48505 * 109.47049 * 239.99462 * 21 19 17 25 25 S 1.70981 * 110.16735 * 359.97438 * 4 3 2 26 26 C 1.33642 * 122.74831 * 180.02562 * 2 1 3 27 27 C 1.50703 * 126.03559 * 359.96914 * 26 2 1 28 28 H 1.09004 * 109.47602 * 89.97275 * 1 2 3 29 29 H 1.09005 * 109.47185 * 209.97146 * 1 2 3 30 30 H 1.09004 * 109.46844 * 329.97131 * 1 2 3 31 31 H 1.09003 * 109.46956 * 205.09707 * 5 4 3 32 32 H 1.08996 * 109.47092 * 325.09334 * 5 4 3 33 33 H 1.09003 * 109.47297 * 89.99659 * 8 7 6 34 34 H 1.09001 * 109.47412 * 209.99747 * 8 7 6 35 35 H 1.09005 * 109.47050 * 330.00017 * 8 7 6 36 36 H 1.09000 * 109.47132 * 66.23603 * 13 12 11 37 37 H 1.08997 * 109.46945 * 186.23007 * 13 12 11 38 38 H 1.08997 * 109.47574 * 306.22940 * 13 12 11 39 39 H 1.08997 * 109.46852 * 59.99929 * 16 14 12 40 40 H 1.09004 * 109.47119 * 180.02562 * 16 14 12 41 41 H 1.09005 * 109.46776 * 299.99747 * 16 14 12 42 42 H 0.97001 * 120.00282 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.46989 * 180.02562 * 27 26 2 44 44 H 1.08994 * 109.47433 * 300.02820 * 27 26 2 45 45 H 1.08994 * 109.46873 * 60.03409 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9818 -0.0005 5 6 4.4835 2.1270 -0.0001 6 7 4.7117 2.5740 1.3763 7 6 5.7226 2.1887 2.2125 8 6 6.8249 1.2126 1.8908 9 7 5.5561 2.8213 3.3392 10 7 4.5163 3.5739 3.2726 11 6 3.9624 3.4650 2.0880 12 7 2.8289 4.1276 1.6445 13 6 1.6473 3.7255 2.4190 14 6 3.0183 5.5835 1.6908 15 1 3.2240 5.8908 2.7162 16 6 4.1963 5.9734 0.7956 17 6 1.7678 6.2686 1.2030 18 1 0.9176 5.6811 0.8895 19 6 1.7095 7.6453 1.1559 20 7 2.7451 8.3608 1.5372 21 14 0.1592 8.4944 0.5519 22 1 -0.8541 7.4726 0.1851 23 1 -0.3807 9.3633 1.6283 24 1 0.4799 9.3224 -0.6384 25 16 3.9332 -0.6733 -0.0004 26 6 2.2299 -1.1240 -0.0005 27 6 1.6846 -2.5289 -0.0005 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8903 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 5.4268 1.7985 -0.4365 32 1 4.0790 2.9513 -0.5874 33 1 7.6727 1.7494 1.4651 34 1 7.1376 0.7041 2.8027 35 1 6.4616 0.4784 1.1716 36 1 1.7557 4.0642 3.4493 37 1 0.7558 4.1743 1.9810 38 1 1.5535 2.6397 2.4014 39 1 3.9906 5.6662 -0.2298 40 1 4.3371 7.0537 0.8303 41 1 5.1007 5.4779 1.1489 42 1 2.7039 9.3293 1.5044 43 1 2.5111 -3.2395 -0.0005 44 1 1.0741 -2.6817 0.8894 45 1 1.0742 -2.6816 -0.8905 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001510418620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:39 Heat of formation + Delta-G solvation = 135.029127 kcal Electronic energy + Delta-G solvation = -27669.728016 eV Core-core repulsion = 24044.175206 eV Total energy + Delta-G solvation = -3625.552810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.50575 -40.05062 -36.95050 -35.42070 -33.12669 -32.94712 -31.41122 -30.04885 -29.27300 -28.44017 -27.14685 -25.37770 -25.17282 -24.26232 -23.18811 -21.71682 -20.56102 -19.47006 -18.94560 -18.11822 -16.86697 -16.41521 -16.03403 -15.34548 -15.06110 -14.89917 -14.51084 -14.23791 -13.76755 -13.72717 -13.52965 -13.23778 -13.08259 -13.02936 -12.81806 -12.69369 -12.54306 -12.49116 -12.25116 -12.11677 -11.72594 -11.28478 -11.13879 -11.09862 -10.89661 -10.73138 -10.30639 -10.22383 -10.09301 -10.04289 -10.00040 -9.52970 -9.36794 -9.02470 -8.79530 -8.48259 -8.36522 -7.59997 -6.03222 -4.08838 0.43635 1.11436 1.50910 2.16043 2.45185 2.94441 3.29760 3.35808 3.37734 3.41932 3.84979 4.37166 4.56798 4.59422 4.68462 4.70004 4.78643 4.79636 5.06422 5.15355 5.29249 5.29419 5.37017 5.42869 5.48332 5.51946 5.61285 5.67592 5.79033 5.85153 6.04182 6.15902 6.20958 6.42905 6.47347 6.70992 6.77398 6.92075 6.98803 7.15326 7.45653 7.68383 7.70134 7.80755 7.98332 8.23103 8.52966 8.95702 9.26257 9.55755 11.03925 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.004322 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.912799 B = 6476.383405 C = 8101.003608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.063 3.937 3 N -0.421 5.421 4 C 0.027 3.973 5 C 0.197 3.803 6 N -0.470 5.470 7 C 0.152 3.848 8 C -0.059 4.059 9 N -0.288 5.288 10 N -0.322 5.322 11 C 0.399 3.601 12 N -0.464 5.464 13 C 0.062 3.938 14 C 0.224 3.776 15 H 0.020 0.980 16 C -0.130 4.130 17 C -0.506 4.506 18 H 0.067 0.933 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 S 0.113 5.887 26 C -0.222 4.222 27 C -0.071 4.071 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.029 0.971 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.032 0.968 40 H 0.092 0.908 41 H 0.000 1.000 42 H 0.261 0.739 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 -22.160 -6.456 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 N -0.135 5.135 4 C -0.253 4.253 5 C 0.069 3.931 6 N -0.166 5.166 7 C -0.115 4.115 8 C -0.118 4.118 9 N -0.128 5.128 10 N -0.164 5.164 11 C 0.044 3.956 12 N -0.191 5.191 13 C -0.086 4.086 14 C 0.120 3.880 15 H 0.037 0.963 16 C -0.188 4.188 17 C -0.545 4.545 18 H 0.086 0.914 19 C -0.140 4.140 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 S 0.368 5.632 26 C -0.343 4.343 27 C -0.130 4.130 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.150 0.850 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.110 0.890 41 H 0.019 0.981 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.132 -21.605 -5.495 22.512 hybrid contribution -1.710 0.443 -0.982 2.021 sum 1.422 -21.162 -6.477 22.177 Atomic orbital electron populations 1.20366 0.86936 1.03515 1.02938 1.20284 0.98423 0.85970 1.02306 1.66132 1.04086 1.31020 1.12252 1.26902 0.94560 0.97229 1.06591 1.20088 0.96444 0.94631 0.81894 1.46332 1.22803 1.34603 1.12900 1.24639 0.94379 1.03497 0.89008 1.20112 0.93336 0.95048 1.03308 1.73941 1.12465 1.07692 1.18725 1.74739 1.05676 1.19330 1.16675 1.22876 0.94234 0.91803 0.86729 1.59175 0.97328 1.10332 1.52252 1.22067 0.92682 0.98257 0.95573 1.19428 0.95761 0.76788 0.96032 0.96266 1.21809 0.94934 1.03914 0.98158 1.21099 0.98832 0.90952 1.43573 0.91447 1.24905 0.96525 0.97284 0.95295 1.69911 1.29367 1.05952 1.47578 0.86417 0.83046 0.79472 0.78330 1.19659 1.21052 1.21060 1.83744 1.07414 1.03256 1.68739 1.25775 0.94787 1.01062 1.12687 1.20209 1.00899 0.88817 1.03123 0.90584 0.90958 0.90074 0.87321 0.85030 0.89841 0.88873 0.91447 0.95229 0.89464 0.93991 0.94926 0.88982 0.98054 0.92877 0.91323 0.90301 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.06 36.01 0.36 -0.43 16 2 C 0.06 0.80 6.74 -84.23 -0.57 0.23 16 3 N -0.42 -6.48 10.53 -8.05 -0.08 -6.56 16 4 C 0.03 0.36 6.97 -13.45 -0.09 0.27 16 5 C 0.20 2.73 6.53 -5.19 -0.03 2.69 16 6 N -0.47 -8.21 2.79 -115.37 -0.32 -8.53 16 7 C 0.15 2.53 8.07 -154.02 -1.24 1.29 16 8 C -0.06 -0.61 10.05 36.01 0.36 -0.25 16 9 N -0.29 -6.01 12.18 32.99 0.40 -5.61 16 10 N -0.32 -7.57 12.14 30.32 0.37 -7.21 16 11 C 0.40 8.62 5.02 -318.87 -1.60 7.02 16 12 N -0.46 -10.51 4.66 -176.09 -0.82 -11.33 16 13 C 0.06 1.32 9.14 60.06 0.55 1.87 16 14 C 0.22 5.85 2.00 -68.87 -0.14 5.71 16 15 H 0.02 0.58 8.09 -51.93 -0.42 0.16 16 16 C -0.13 -3.29 8.84 37.16 0.33 -2.96 16 17 C -0.51 -13.73 7.95 -34.44 -0.27 -14.01 16 18 H 0.07 1.80 6.40 -52.49 -0.34 1.47 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 20 N -0.89 -25.51 11.32 55.43 0.63 -24.88 16 21 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 S 0.11 1.18 23.18 -107.50 -2.49 -1.31 16 26 C -0.22 -2.35 6.59 -35.92 -0.24 -2.59 16 27 C -0.07 -0.49 9.56 36.01 0.34 -0.15 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.56 7.46 -51.93 -0.39 0.17 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.11 1.06 7.63 -51.93 -0.40 0.66 16 32 H 0.13 2.02 8.14 -51.93 -0.42 1.59 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.56 7.78 -51.93 -0.40 0.16 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.86 6.32 -51.93 -0.33 1.53 16 38 H 0.04 0.84 8.10 -51.93 -0.42 0.41 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 41 H 0.00 0.01 7.22 -51.93 -0.38 -0.36 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.49 8.00 -51.93 -0.42 0.07 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 385.13 15.07 5.80 5.80 Total: -1.00 -33.98 385.13 -10.61 -44.60 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.74 Total: -1.43 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.34 Total: 0.30 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: 0.17 Total: -64.11 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.49 Total: -1.31 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.98 -10.61 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510418620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.625 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds