Wall clock time and date at job start Tue Mar 31 2020 19:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31775 * 122.75181 * 2 1 4 4 C 1.29026 * 117.12520 * 180.02562 * 3 2 1 5 5 C 1.50706 * 124.91448 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47256 * 85.09600 * 5 4 3 7 7 C 1.36739 * 127.13785 * 94.98910 * 6 5 4 8 8 C 1.50701 * 126.34716 * 359.94776 * 7 6 5 9 9 N 1.30285 * 107.30769 * 179.97438 * 7 6 5 10 10 N 1.28528 * 110.05460 * 0.02562 * 9 7 6 11 11 C 1.31220 * 109.85717 * 359.74343 * 10 9 7 12 12 N 1.38588 * 126.47243 * 180.26062 * 11 10 9 13 13 C 1.46895 * 110.99548 * 295.79122 * 12 11 10 14 14 C 1.46892 * 110.99944 * 59.74565 * 12 11 10 15 15 H 1.08999 * 109.47652 * 299.99880 * 14 12 11 16 16 C 1.53005 * 109.47354 * 60.00011 * 14 12 11 17 17 C 1.50702 * 109.47329 * 180.02562 * 14 12 11 18 18 H 1.08000 * 119.99289 * 359.97438 * 17 14 12 19 19 C 1.37868 * 120.00370 * 180.02562 * 17 14 12 20 20 N 1.31513 * 120.00294 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99991 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47350 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47297 * 119.99771 * 21 19 17 24 24 H 1.48505 * 109.47049 * 239.99462 * 21 19 17 25 25 S 1.70981 * 110.16735 * 359.97438 * 4 3 2 26 26 C 1.33642 * 122.74831 * 180.02562 * 2 1 3 27 27 C 1.50703 * 126.03559 * 359.96914 * 26 2 1 28 28 H 1.09004 * 109.47602 * 89.97275 * 1 2 3 29 29 H 1.09005 * 109.47185 * 209.97146 * 1 2 3 30 30 H 1.09004 * 109.46844 * 329.97131 * 1 2 3 31 31 H 1.09003 * 109.46956 * 205.09707 * 5 4 3 32 32 H 1.08996 * 109.47092 * 325.09334 * 5 4 3 33 33 H 1.09003 * 109.47297 * 89.99659 * 8 7 6 34 34 H 1.09001 * 109.47412 * 209.99747 * 8 7 6 35 35 H 1.09005 * 109.47050 * 330.00017 * 8 7 6 36 36 H 1.09000 * 109.47132 * 66.23603 * 13 12 11 37 37 H 1.08997 * 109.46945 * 186.23007 * 13 12 11 38 38 H 1.08997 * 109.47574 * 306.22940 * 13 12 11 39 39 H 1.08997 * 109.46852 * 59.99929 * 16 14 12 40 40 H 1.09004 * 109.47119 * 180.02562 * 16 14 12 41 41 H 1.09005 * 109.46776 * 299.99747 * 16 14 12 42 42 H 0.97001 * 120.00282 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.46989 * 180.02562 * 27 26 2 44 44 H 1.08994 * 109.47433 * 300.02820 * 27 26 2 45 45 H 1.08994 * 109.46873 * 60.03409 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9818 -0.0005 5 6 4.4835 2.1270 -0.0001 6 7 4.7117 2.5740 1.3763 7 6 5.7226 2.1887 2.2125 8 6 6.8249 1.2126 1.8908 9 7 5.5561 2.8213 3.3392 10 7 4.5163 3.5739 3.2726 11 6 3.9624 3.4650 2.0880 12 7 2.8289 4.1276 1.6445 13 6 1.6473 3.7255 2.4190 14 6 3.0183 5.5835 1.6908 15 1 3.2240 5.8908 2.7162 16 6 4.1963 5.9734 0.7956 17 6 1.7678 6.2686 1.2030 18 1 0.9176 5.6811 0.8895 19 6 1.7095 7.6453 1.1559 20 7 2.7451 8.3608 1.5372 21 14 0.1592 8.4944 0.5519 22 1 -0.8541 7.4726 0.1851 23 1 -0.3807 9.3633 1.6283 24 1 0.4799 9.3224 -0.6384 25 16 3.9332 -0.6733 -0.0004 26 6 2.2299 -1.1240 -0.0005 27 6 1.6846 -2.5289 -0.0005 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8903 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 5.4268 1.7985 -0.4365 32 1 4.0790 2.9513 -0.5874 33 1 7.6727 1.7494 1.4651 34 1 7.1376 0.7041 2.8027 35 1 6.4616 0.4784 1.1716 36 1 1.7557 4.0642 3.4493 37 1 0.7558 4.1743 1.9810 38 1 1.5535 2.6397 2.4014 39 1 3.9906 5.6662 -0.2298 40 1 4.3371 7.0537 0.8303 41 1 5.1007 5.4779 1.1489 42 1 2.7039 9.3293 1.5044 43 1 2.5111 -3.2395 -0.0005 44 1 1.0741 -2.6817 0.8894 45 1 1.0742 -2.6816 -0.8905 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001510418620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:39 Heat of formation + Delta-G solvation = 114.195803 kcal Electronic energy + Delta-G solvation = -27670.631416 eV Core-core repulsion = 24044.175206 eV Total energy + Delta-G solvation = -3626.456210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.99362 -40.95640 -38.80294 -36.63427 -34.96191 -34.05117 -32.71043 -31.30392 -30.81224 -29.55008 -28.54538 -27.31087 -26.13773 -25.93398 -24.23919 -23.50974 -21.85150 -21.17933 -19.87150 -19.02991 -18.51179 -18.12308 -17.52054 -16.97634 -16.46889 -16.07480 -15.82667 -15.59929 -15.39248 -14.90211 -14.62157 -14.38963 -14.22224 -13.90122 -13.77226 -13.76408 -13.67929 -13.53136 -13.36294 -13.32580 -13.07593 -12.91906 -12.85467 -12.71891 -12.56504 -12.25536 -12.21014 -12.06475 -12.05196 -11.57425 -11.43093 -11.08448 -10.59327 -10.50621 -10.19481 -9.91939 -9.64309 -9.48607 -8.15232 -6.28875 -0.45825 0.26715 0.63222 0.75579 1.25888 1.42900 1.44090 1.56799 1.81232 1.87298 2.41273 2.93096 3.02801 3.16630 3.46903 3.57618 3.86443 3.99788 4.09147 4.11545 4.13721 4.26486 4.47320 4.58897 4.64348 4.66945 4.68747 4.70854 4.79363 4.80127 4.82763 4.85641 4.87420 4.94238 4.98035 5.01518 5.06382 5.09081 5.36156 5.38450 5.57014 5.64596 5.86692 5.98212 6.14556 6.63704 6.81328 6.81569 7.40027 7.73839 8.92297 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.004322 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.912799 B = 6476.383405 C = 8101.003608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.029 3.971 3 N -0.462 5.462 4 C -0.010 4.010 5 C 0.192 3.808 6 N -0.465 5.465 7 C 0.180 3.820 8 C -0.060 4.060 9 N -0.333 5.333 10 N -0.367 5.367 11 C 0.376 3.624 12 N -0.455 5.455 13 C 0.074 3.926 14 C 0.235 3.765 15 H -0.032 1.032 16 C -0.109 4.109 17 C -0.519 4.519 18 H 0.069 0.931 19 C 0.014 3.986 20 N -0.921 5.921 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.282 1.282 24 H -0.278 1.278 25 S 0.178 5.822 26 C -0.214 4.214 27 C -0.073 4.073 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.154 0.846 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.009 0.991 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.001 0.999 42 H 0.263 0.737 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 -25.397 -8.295 26.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 N -0.178 5.178 4 C -0.287 4.287 5 C 0.066 3.934 6 N -0.159 5.159 7 C -0.089 4.089 8 C -0.118 4.118 9 N -0.172 5.172 10 N -0.209 5.209 11 C 0.018 3.982 12 N -0.181 5.181 13 C -0.073 4.073 14 C 0.129 3.871 15 H -0.014 1.014 16 C -0.167 4.167 17 C -0.557 4.557 18 H 0.087 0.913 19 C -0.185 4.185 20 N -0.560 5.560 21 Si 0.793 3.207 22 H -0.187 1.187 23 H -0.208 1.208 24 H -0.204 1.204 25 S 0.434 5.566 26 C -0.335 4.335 27 C -0.132 4.132 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.172 0.828 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.028 0.972 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.494 -24.872 -7.351 26.170 hybrid contribution -1.729 1.255 -0.410 2.175 sum 1.765 -23.617 -7.761 24.923 Atomic orbital electron populations 1.20400 0.85938 1.03554 1.03536 1.20614 0.99411 0.86142 1.04082 1.66104 1.05367 1.33196 1.13094 1.26769 0.94291 0.99069 1.08610 1.20395 0.98840 0.94572 0.79583 1.46482 1.21926 1.33447 1.14086 1.25838 0.93978 1.01735 0.87317 1.20497 0.91866 0.94435 1.05034 1.73849 1.12660 1.09449 1.21283 1.74596 1.07115 1.20861 1.18304 1.22690 0.94624 0.93525 0.87333 1.59069 0.98257 1.08400 1.52346 1.21935 0.92399 0.98793 0.94211 1.19096 0.95785 0.79098 0.93097 1.01396 1.21537 0.94718 1.02117 0.98356 1.21316 0.99221 0.91490 1.43673 0.91338 1.25747 0.99614 0.97889 0.95225 1.70052 1.31368 1.06246 1.48362 0.85350 0.79240 0.78323 0.77779 1.18692 1.20832 1.20389 1.83350 1.06610 0.99654 1.67029 1.26347 0.95095 1.02230 1.09874 1.20405 1.01807 0.86631 1.04395 0.89721 0.88544 0.92348 0.82794 0.87217 0.87228 0.87414 0.88554 0.97205 0.89749 0.92723 0.94074 0.91370 0.98021 0.92739 0.89781 0.89234 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.06 71.24 0.72 -0.74 16 2 C 0.03 0.71 6.74 41.52 0.28 0.99 16 3 N -0.46 -14.02 10.53 -179.40 -1.89 -15.91 16 4 C -0.01 -0.25 6.97 88.52 0.62 0.37 16 5 C 0.19 5.06 6.53 85.63 0.56 5.62 16 6 N -0.46 -15.97 2.79 -518.91 -1.45 -17.42 16 7 C 0.18 5.73 8.07 137.64 1.11 6.84 16 8 C -0.06 -1.01 10.05 71.24 0.72 -0.30 16 9 N -0.33 -14.07 12.18 -49.54 -0.60 -14.67 16 10 N -0.37 -18.00 12.14 -58.00 -0.70 -18.70 16 11 C 0.38 16.76 5.02 260.11 1.31 18.07 16 12 N -0.45 -21.51 4.66 -711.03 -3.31 -24.83 16 13 C 0.07 3.35 9.14 127.69 1.17 4.51 16 14 C 0.24 12.89 2.00 44.17 0.09 12.98 16 15 H -0.03 -2.03 8.09 -2.39 -0.02 -2.05 16 16 C -0.11 -5.74 8.84 71.98 0.64 -5.10 16 17 C -0.52 -29.08 7.95 25.60 0.20 -28.87 16 18 H 0.07 3.76 6.40 -2.91 -0.02 3.74 16 19 C 0.01 0.80 5.30 84.65 0.45 1.25 16 20 N -0.92 -54.49 11.32 21.44 0.24 -54.25 16 21 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 25 S 0.18 3.10 23.18 -56.49 -1.31 1.79 16 26 C -0.21 -3.91 6.59 24.64 0.16 -3.75 16 27 C -0.07 -0.72 9.56 71.24 0.68 -0.04 16 28 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.10 1.30 7.46 -2.38 -0.02 1.29 16 30 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.15 2.48 7.63 -2.39 -0.02 2.46 16 32 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.10 1.11 7.78 -2.38 -0.02 1.09 16 36 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.08 3.77 6.32 -2.39 -0.02 3.76 16 38 H 0.05 2.28 8.10 -2.39 -0.02 2.26 16 39 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 3.92 6.07 -2.38 -0.01 3.90 16 41 H 0.00 0.04 7.22 -2.38 -0.02 0.02 16 42 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.09 0.76 8.00 -2.39 -0.02 0.74 16 45 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -79.20 385.13 2.69 -76.51 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.00 Total: 9.61 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 8.69 Total: 11.82 kcal Atomic # 7 Polarization: -138.07 SS G_CDS: -7.71 Total: -145.79 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.31 Total: 1.79 kcal Total: -79.20 2.69 -76.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510418620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.703 kcal (2) G-P(sol) polarization free energy of solvation -79.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds