Wall clock time and date at job start Tue Mar 31 2020 20:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47288 * 2 1 4 4 O 1.33648 * 125.79914 * 270.00719 * 3 2 1 5 5 C 1.34217 * 110.90810 * 179.97438 * 4 3 2 6 6 C 1.34186 * 109.12308 * 359.70495 * 5 4 3 7 7 C 1.36414 * 125.80059 * 89.99742 * 3 2 1 8 8 C 1.47380 * 127.19304 * 0.02562 * 7 3 2 9 9 O 1.21613 * 119.99825 * 359.97438 * 8 7 3 10 10 N 1.34778 * 120.00071 * 179.97438 * 8 7 3 11 11 C 1.46499 * 120.00116 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.64087 * 323.30520 * 11 10 8 13 13 C 1.54599 * 110.72053 * 86.45396 * 11 10 8 14 14 C 1.53997 * 105.13806 * 140.49545 * 13 11 10 15 15 N 1.47906 * 107.05647 * 1.22493 * 14 13 11 16 16 C 1.46899 * 110.99905 * 214.15473 * 15 14 13 17 17 C 1.50692 * 109.47268 * 176.64646 * 16 15 14 18 18 O 1.21296 * 119.99902 * 6.15960 * 17 16 15 19 19 N 1.34780 * 120.00093 * 186.15852 * 17 16 15 20 20 C 1.37102 * 119.99873 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99910 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99846 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00015 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00012 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47378 * 90.00127 * 24 22 20 26 26 H 1.48503 * 109.47472 * 210.00151 * 24 22 20 27 27 H 1.48504 * 109.47357 * 330.00120 * 24 22 20 28 28 C 1.48528 * 105.82211 * 334.67113 * 15 14 13 29 29 H 1.09003 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46654 * 299.99516 * 1 2 3 31 31 H 1.08995 * 109.47572 * 59.99803 * 1 2 3 32 32 H 1.09001 * 109.47328 * 240.00183 * 2 1 3 33 33 H 1.08995 * 109.47572 * 120.00197 * 2 1 3 34 34 H 1.07994 * 125.44066 * 180.02562 * 5 4 3 35 35 H 1.07996 * 127.02702 * 180.27820 * 6 5 4 36 36 H 0.96993 * 119.99701 * 359.97438 * 10 8 7 37 37 H 1.08998 * 110.30998 * 21.58090 * 13 11 10 38 38 H 1.09001 * 110.30665 * 259.40609 * 13 11 10 39 39 H 1.09002 * 109.91626 * 120.57282 * 14 13 11 40 40 H 1.09000 * 109.91727 * 241.87221 * 14 13 11 41 41 H 1.09006 * 109.47191 * 296.65193 * 16 15 14 42 42 H 1.09002 * 109.46951 * 56.64987 * 16 15 14 43 43 H 0.96995 * 120.00110 * 0.02562 * 19 17 16 44 44 H 0.97000 * 119.99453 * 179.97438 * 23 22 20 45 45 H 1.09004 * 110.66592 * 280.77406 * 28 15 14 46 46 H 1.08999 * 110.67165 * 157.64204 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2928 2.1580 -1.0840 5 6 2.7248 3.3810 -0.7391 6 6 2.7514 3.4766 0.5991 7 6 2.2983 2.1732 1.1064 8 6 2.1551 1.7667 2.5157 9 8 1.7600 0.6494 2.7891 10 7 2.4618 2.6330 3.5016 11 6 2.3189 2.2291 4.9025 12 1 1.4458 1.5893 5.0307 13 6 3.5974 1.5160 5.3993 14 6 3.8079 2.0238 6.8379 15 7 2.6915 2.9457 7.1402 16 6 3.1338 4.0386 8.0165 17 6 1.9940 4.9997 8.2352 18 8 0.8899 4.7387 7.8063 19 7 2.2015 6.1493 8.9075 20 6 1.1643 7.0235 9.1069 21 1 0.1810 6.7907 8.7258 22 6 1.3783 8.2089 9.7995 23 7 0.3840 9.0466 9.9912 24 14 3.0789 8.6111 10.4594 25 1 3.8433 9.3634 9.4323 26 1 2.9511 9.4386 11.6859 27 1 3.7945 7.3512 10.7848 28 6 2.2313 3.4683 5.8283 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.0013 4.1650 -1.4284 35 1 3.0481 4.3346 1.1840 36 1 2.7772 3.5239 3.2834 37 1 4.4486 1.7864 4.7744 38 1 3.4532 0.4356 5.3969 39 1 3.7953 1.1847 7.5334 40 1 4.7574 2.5545 6.9091 41 1 3.4531 3.6293 8.9750 42 1 3.9674 4.5637 7.5499 43 1 3.0845 6.3582 9.2501 44 1 0.5334 9.8739 10.4750 45 1 2.8931 4.2594 5.4757 46 1 1.2039 3.8263 5.8957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567872773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:58 Heat of formation + Delta-G solvation = -45.847642 kcal Electronic energy + Delta-G solvation = -28471.128195 eV Core-core repulsion = 24362.686358 eV Total energy + Delta-G solvation = -4108.441837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.87456 -39.98941 -38.89642 -37.57204 -34.71347 -34.16253 -33.93205 -33.02023 -31.73073 -30.96524 -29.16546 -28.39760 -26.77817 -24.55905 -23.94333 -23.19966 -21.67997 -21.28838 -20.34026 -19.92318 -19.38824 -18.33348 -18.12135 -16.64916 -16.47024 -16.29974 -15.98952 -15.32141 -15.21690 -14.90284 -14.71894 -14.59016 -14.35936 -14.18543 -13.69332 -13.60964 -13.22876 -13.03526 -12.95208 -12.86413 -12.56860 -12.49432 -12.37314 -11.84823 -11.82514 -11.78051 -11.41329 -11.31644 -11.27690 -11.00055 -10.69103 -10.61469 -10.11023 -10.05634 -10.00339 -9.58292 -9.17398 -8.85657 -8.58801 -8.23290 -8.11878 -6.33918 -3.85466 1.11714 1.75685 2.48631 3.00038 3.03612 3.04301 3.12621 3.20947 3.69632 4.02780 4.08010 4.16600 4.46646 4.53959 4.65190 4.70380 4.81078 4.86845 4.97632 5.04677 5.10117 5.18465 5.20223 5.30508 5.37129 5.38626 5.52437 5.59011 5.67959 5.68541 5.73138 5.79649 5.83924 5.89734 5.94680 5.99270 6.02581 6.08180 6.36719 6.43346 6.72616 7.02194 7.07283 7.41603 7.55249 8.11285 8.12478 8.56858 8.92161 9.39189 9.79495 10.79103 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002263 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.828626 B =12368.845978 C =13013.793503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.052 4.052 3 C 0.081 3.919 4 O -0.176 6.176 5 C -0.039 4.039 6 C -0.188 4.188 7 C -0.244 4.244 8 C 0.592 3.408 9 O -0.539 6.539 10 N -0.713 5.713 11 C 0.142 3.858 12 H 0.105 0.895 13 C -0.139 4.139 14 C 0.034 3.966 15 N -0.490 5.490 16 C 0.035 3.965 17 C 0.450 3.550 18 O -0.559 6.559 19 N -0.590 5.590 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.880 5.880 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.035 3.965 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.208 0.792 35 H 0.157 0.843 36 H 0.400 0.600 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.095 0.905 42 H 0.049 0.951 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.042 0.958 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.571 -13.687 -19.508 26.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 C 0.028 3.972 4 O -0.072 6.072 5 C -0.105 4.105 6 C -0.208 4.208 7 C -0.248 4.248 8 C 0.380 3.620 9 O -0.418 6.418 10 N -0.364 5.364 11 C 0.037 3.963 12 H 0.123 0.877 13 C -0.178 4.178 14 C -0.094 4.094 15 N -0.214 5.214 16 C -0.097 4.097 17 C 0.236 3.764 18 O -0.441 6.441 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.093 4.093 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.132 0.868 34 H 0.224 0.776 35 H 0.175 0.825 36 H 0.234 0.766 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.993 -14.800 -19.492 26.074 hybrid contribution 2.399 1.877 0.371 3.068 sum 11.392 -12.924 -19.120 25.737 Atomic orbital electron populations 1.21695 0.93191 1.02746 1.02520 1.20407 0.97117 0.86319 1.05047 1.22888 0.96807 0.94451 0.83079 1.83772 1.65196 1.23188 1.35025 1.23867 1.04115 0.86082 0.96421 1.22905 1.05528 0.97706 0.94633 1.21170 1.13939 0.95795 0.93902 1.17162 0.76740 0.84478 0.83623 1.90757 1.46786 1.20249 1.83985 1.45766 1.67884 1.16927 1.05810 1.21939 0.98815 0.96786 0.78785 0.87742 1.22801 0.97909 1.01466 0.95653 1.22927 0.92991 0.97201 0.96271 1.64484 1.30297 1.14972 1.11632 1.22136 0.96243 0.92528 0.98768 1.19610 0.89777 0.82927 0.84105 1.90539 1.25020 1.75666 1.52886 1.42215 1.11220 1.18619 1.50902 1.19427 0.92223 0.97817 1.33851 0.86233 1.25042 0.97718 0.95944 0.97464 1.69624 1.30820 1.10743 1.40851 0.86679 0.84092 0.78955 0.79705 1.19697 1.20134 1.19466 1.23550 1.04078 0.94081 0.87585 0.91272 0.91688 0.92656 0.90101 0.86761 0.77554 0.82506 0.76577 0.91353 0.90408 0.90009 0.93758 0.88733 0.93323 0.79722 0.91593 0.93983 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.89 37.16 0.37 -0.86 16 2 C -0.05 -0.46 5.94 -27.88 -0.17 -0.63 16 3 C 0.08 0.84 6.63 -34.96 -0.23 0.61 16 4 O -0.18 -1.68 10.52 7.66 0.08 -1.60 16 5 C -0.04 -0.29 12.03 29.30 0.35 0.06 16 6 C -0.19 -1.63 10.60 -37.45 -0.40 -2.03 16 7 C -0.24 -2.72 6.31 -103.28 -0.65 -3.38 16 8 C 0.59 7.64 7.81 -12.54 -0.10 7.54 16 9 O -0.54 -8.21 14.57 5.27 0.08 -8.14 16 10 N -0.71 -8.34 5.14 -53.09 -0.27 -8.61 16 11 C 0.14 1.88 3.34 -66.07 -0.22 1.66 16 12 H 0.10 1.59 7.69 -51.93 -0.40 1.20 16 13 C -0.14 -1.61 6.67 -25.37 -0.17 -1.78 16 14 C 0.03 0.42 6.70 -2.75 -0.02 0.40 16 15 N -0.49 -7.74 5.11 -231.89 -1.18 -8.92 16 16 C 0.04 0.58 5.30 -4.98 -0.03 0.55 16 17 C 0.45 9.99 7.41 -10.99 -0.08 9.91 16 18 O -0.56 -14.56 13.87 5.54 0.08 -14.49 16 19 N -0.59 -13.78 5.09 -10.96 -0.06 -13.84 16 20 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16 21 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.47 13.96 55.50 0.77 -24.70 16 24 Si 0.88 19.07 27.74 -169.99 -4.71 14.36 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 28 C 0.04 0.54 5.20 -1.90 -0.01 0.53 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.11 1.16 6.48 -51.93 -0.34 0.82 16 34 H 0.21 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.16 1.02 7.74 -52.49 -0.41 0.62 16 36 H 0.40 3.88 7.71 -40.82 -0.31 3.56 16 37 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.48 7.68 -51.93 -0.40 0.08 16 41 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.05 0.69 7.98 -51.93 -0.41 0.28 16 43 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 44 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.04 0.60 7.89 -51.93 -0.41 0.19 16 46 H 0.11 2.17 6.43 -51.93 -0.33 1.83 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -34.13 380.40 -7.69 -41.82 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -6.61 Total: 13.40 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -1.60 Total: 4.98 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.74 Total: -56.07 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: 0.23 Total: -24.22 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.13 -7.69 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567872773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.028 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds