Wall clock time and date at job start Tue Mar 31 2020 20:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47288 * 2 1 4 4 O 1.33648 * 125.79914 * 270.00719 * 3 2 1 5 5 C 1.34217 * 110.90810 * 179.97438 * 4 3 2 6 6 C 1.34186 * 109.12308 * 359.70495 * 5 4 3 7 7 C 1.36414 * 125.80059 * 89.99742 * 3 2 1 8 8 C 1.47380 * 127.19304 * 0.02562 * 7 3 2 9 9 O 1.21613 * 119.99825 * 359.97438 * 8 7 3 10 10 N 1.34778 * 120.00071 * 179.97438 * 8 7 3 11 11 C 1.46499 * 120.00116 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.64087 * 323.30520 * 11 10 8 13 13 C 1.54599 * 110.72053 * 86.45396 * 11 10 8 14 14 C 1.53997 * 105.13806 * 140.49545 * 13 11 10 15 15 N 1.47906 * 107.05647 * 1.22493 * 14 13 11 16 16 C 1.46899 * 110.99905 * 214.15473 * 15 14 13 17 17 C 1.50692 * 109.47268 * 176.64646 * 16 15 14 18 18 O 1.21296 * 119.99902 * 6.15960 * 17 16 15 19 19 N 1.34780 * 120.00093 * 186.15852 * 17 16 15 20 20 C 1.37102 * 119.99873 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99910 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99846 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00015 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00012 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47378 * 90.00127 * 24 22 20 26 26 H 1.48503 * 109.47472 * 210.00151 * 24 22 20 27 27 H 1.48504 * 109.47357 * 330.00120 * 24 22 20 28 28 C 1.48528 * 105.82211 * 334.67113 * 15 14 13 29 29 H 1.09003 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46654 * 299.99516 * 1 2 3 31 31 H 1.08995 * 109.47572 * 59.99803 * 1 2 3 32 32 H 1.09001 * 109.47328 * 240.00183 * 2 1 3 33 33 H 1.08995 * 109.47572 * 120.00197 * 2 1 3 34 34 H 1.07994 * 125.44066 * 180.02562 * 5 4 3 35 35 H 1.07996 * 127.02702 * 180.27820 * 6 5 4 36 36 H 0.96993 * 119.99701 * 359.97438 * 10 8 7 37 37 H 1.08998 * 110.30998 * 21.58090 * 13 11 10 38 38 H 1.09001 * 110.30665 * 259.40609 * 13 11 10 39 39 H 1.09002 * 109.91626 * 120.57282 * 14 13 11 40 40 H 1.09000 * 109.91727 * 241.87221 * 14 13 11 41 41 H 1.09006 * 109.47191 * 296.65193 * 16 15 14 42 42 H 1.09002 * 109.46951 * 56.64987 * 16 15 14 43 43 H 0.96995 * 120.00110 * 0.02562 * 19 17 16 44 44 H 0.97000 * 119.99453 * 179.97438 * 23 22 20 45 45 H 1.09004 * 110.66592 * 280.77406 * 28 15 14 46 46 H 1.08999 * 110.67165 * 157.64204 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2928 2.1580 -1.0840 5 6 2.7248 3.3810 -0.7391 6 6 2.7514 3.4766 0.5991 7 6 2.2983 2.1732 1.1064 8 6 2.1551 1.7667 2.5157 9 8 1.7600 0.6494 2.7891 10 7 2.4618 2.6330 3.5016 11 6 2.3189 2.2291 4.9025 12 1 1.4458 1.5893 5.0307 13 6 3.5974 1.5160 5.3993 14 6 3.8079 2.0238 6.8379 15 7 2.6915 2.9457 7.1402 16 6 3.1338 4.0386 8.0165 17 6 1.9940 4.9997 8.2352 18 8 0.8899 4.7387 7.8063 19 7 2.2015 6.1493 8.9075 20 6 1.1643 7.0235 9.1069 21 1 0.1810 6.7907 8.7258 22 6 1.3783 8.2089 9.7995 23 7 0.3840 9.0466 9.9912 24 14 3.0789 8.6111 10.4594 25 1 3.8433 9.3634 9.4323 26 1 2.9511 9.4386 11.6859 27 1 3.7945 7.3512 10.7848 28 6 2.2313 3.4683 5.8283 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.0013 4.1650 -1.4284 35 1 3.0481 4.3346 1.1840 36 1 2.7772 3.5239 3.2834 37 1 4.4486 1.7864 4.7744 38 1 3.4532 0.4356 5.3969 39 1 3.7953 1.1847 7.5334 40 1 4.7574 2.5545 6.9091 41 1 3.4531 3.6293 8.9750 42 1 3.9674 4.5637 7.5499 43 1 3.0845 6.3582 9.2501 44 1 0.5334 9.8739 10.4750 45 1 2.8931 4.2594 5.4757 46 1 1.2039 3.8263 5.8957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567872773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:57 Heat of formation + Delta-G solvation = -72.883255 kcal Electronic energy + Delta-G solvation = -28472.300547 eV Core-core repulsion = 24362.686358 eV Total energy + Delta-G solvation = -4109.614189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.57973 -41.13931 -40.32406 -38.98121 -36.06941 -35.58765 -34.93862 -33.84621 -33.70730 -32.11493 -29.93677 -29.43573 -28.29568 -25.95008 -25.12504 -23.96384 -22.61512 -22.33993 -21.33255 -21.26011 -20.79096 -20.16862 -18.91953 -17.86079 -17.56141 -17.29814 -16.96990 -16.76071 -16.62678 -16.08045 -15.93241 -15.59189 -15.40891 -15.29579 -14.92250 -14.80851 -14.55653 -14.24633 -14.18832 -13.95443 -13.87792 -13.57955 -13.28557 -13.24159 -12.99946 -12.82469 -12.56338 -12.43265 -12.42048 -12.31155 -11.99054 -11.97935 -11.71770 -11.47691 -11.07736 -10.86228 -10.37147 -10.24691 -10.14823 -9.57272 -9.36140 -8.40824 -6.01761 0.29732 1.10715 1.30777 1.35603 1.45071 1.77331 1.95084 2.11154 2.23411 2.27886 2.69642 3.15301 3.26904 3.46326 3.54118 3.74516 3.78281 3.87178 4.04046 4.13750 4.16848 4.24092 4.28287 4.33801 4.38316 4.42886 4.53025 4.58351 4.67972 4.73116 4.88775 4.93165 4.94091 5.00403 5.06374 5.09309 5.16516 5.26403 5.34681 5.42022 5.52833 5.82940 5.91591 6.01447 6.03958 6.48379 6.60009 6.88884 7.15419 7.39879 7.97181 8.76803 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002263 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.828626 B =12368.845978 C =13013.793503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 C 0.072 3.928 4 O -0.180 6.180 5 C -0.028 4.028 6 C -0.201 4.201 7 C -0.268 4.268 8 C 0.588 3.412 9 O -0.570 6.570 10 N -0.705 5.705 11 C 0.149 3.851 12 H 0.075 0.925 13 C -0.128 4.128 14 C 0.040 3.960 15 N -0.517 5.517 16 C 0.047 3.953 17 C 0.449 3.551 18 O -0.607 6.607 19 N -0.591 5.591 20 C -0.326 4.326 21 H 0.054 0.946 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.965 3.035 25 H -0.256 1.256 26 H -0.277 1.277 27 H -0.230 1.230 28 C 0.042 3.958 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.249 0.751 35 H 0.176 0.824 36 H 0.411 0.589 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.056 0.944 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.023 -13.850 -20.223 28.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C 0.019 3.981 4 O -0.076 6.076 5 C -0.093 4.093 6 C -0.220 4.220 7 C -0.273 4.273 8 C 0.377 3.623 9 O -0.451 6.451 10 N -0.356 5.356 11 C 0.043 3.957 12 H 0.093 0.907 13 C -0.167 4.167 14 C -0.088 4.088 15 N -0.242 5.242 16 C -0.084 4.084 17 C 0.237 3.763 18 O -0.491 6.491 19 N -0.233 5.233 20 C -0.455 4.455 21 H 0.073 0.927 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.785 3.215 25 H -0.180 1.180 26 H -0.202 1.202 27 H -0.153 1.153 28 C -0.087 4.087 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.264 0.736 35 H 0.194 0.806 36 H 0.247 0.753 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.141 0.859 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.472 -14.975 -20.220 28.541 hybrid contribution 0.854 1.890 0.498 2.133 sum 14.326 -13.084 -19.722 27.666 Atomic orbital electron populations 1.21660 0.93093 1.03442 1.01531 1.20413 0.97137 0.85953 1.05373 1.23112 0.96724 0.95031 0.83254 1.83791 1.65169 1.23962 1.34653 1.24685 1.02040 0.85769 0.96833 1.23173 1.06125 0.97298 0.95418 1.21222 1.15480 0.97562 0.92988 1.17480 0.76121 0.84125 0.84539 1.90734 1.48233 1.21600 1.84575 1.45650 1.67574 1.17359 1.05034 1.21669 0.99014 0.95617 0.79367 0.90681 1.22731 0.97098 1.01099 0.95821 1.22985 0.92642 0.96786 0.96343 1.64407 1.32720 1.15371 1.11702 1.22092 0.93974 0.91576 1.00796 1.20861 0.90851 0.82904 0.81718 1.90542 1.27834 1.76633 1.54047 1.42027 1.10925 1.18524 1.51779 1.18980 0.91367 0.99882 1.35301 0.92742 1.26127 1.03562 0.94824 0.96968 1.69812 1.34305 1.11554 1.41915 0.85366 0.77132 0.80259 0.78773 1.18030 1.20206 1.15350 1.23293 1.01744 0.95190 0.88438 0.89794 0.94367 0.91791 0.87745 0.88367 0.73553 0.80635 0.75296 0.89642 0.90523 0.88971 0.91027 0.85883 0.89630 0.77471 0.91182 0.92547 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.89 71.98 0.71 -1.69 16 2 C -0.05 -0.92 5.94 29.85 0.18 -0.74 16 3 C 0.07 1.47 6.63 25.26 0.17 1.64 16 4 O -0.18 -3.13 10.52 4.48 0.05 -3.08 16 5 C -0.03 -0.36 12.03 66.89 0.80 0.45 16 6 C -0.20 -3.16 10.60 23.65 0.25 -2.91 16 7 C -0.27 -5.93 6.31 -18.99 -0.12 -6.05 16 8 C 0.59 15.52 7.81 86.65 0.68 16.19 16 9 O -0.57 -18.19 14.57 -4.07 -0.06 -18.25 16 10 N -0.71 -16.48 5.14 -440.13 -2.26 -18.74 16 11 C 0.15 3.98 3.34 46.20 0.15 4.14 16 12 H 0.07 2.45 7.69 -2.39 -0.02 2.43 16 13 C -0.13 -2.72 6.67 31.48 0.21 -2.51 16 14 C 0.04 0.83 6.70 86.45 0.58 1.41 16 15 N -0.52 -15.49 5.11 -887.57 -4.53 -20.03 16 16 C 0.05 1.39 5.30 85.55 0.45 1.84 16 17 C 0.45 19.87 7.41 87.65 0.65 20.52 16 18 O -0.61 -33.19 13.87 -3.08 -0.04 -33.23 16 19 N -0.59 -27.27 5.09 -306.98 -1.56 -28.84 16 20 C -0.33 -18.89 10.16 84.04 0.85 -18.04 16 21 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 22 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 23 N -0.94 -56.13 13.96 21.66 0.30 -55.82 16 24 Si 0.96 38.04 27.74 68.60 1.90 39.95 16 25 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 26 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 28 C 0.04 1.29 5.20 86.65 0.45 1.74 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 32 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 2.07 6.48 -2.39 -0.02 2.06 16 34 H 0.25 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.18 1.92 7.74 -2.91 -0.02 1.89 16 36 H 0.41 7.66 7.71 -92.71 -0.71 6.94 16 37 H 0.08 1.55 8.05 -2.39 -0.02 1.53 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 1.15 7.68 -2.39 -0.02 1.14 16 41 H 0.12 3.04 8.14 -2.38 -0.02 3.02 16 42 H 0.09 1.98 7.98 -2.39 -0.02 1.96 16 43 H 0.39 14.74 5.76 -92.71 -0.53 14.20 16 44 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.06 1.54 7.89 -2.38 -0.02 1.52 16 46 H 0.07 2.74 6.43 -2.39 -0.02 2.73 16 Total: -1.00 -82.37 380.40 -0.01 -82.38 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: -0.28 Total: 40.10 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 6.49 Total: 15.56 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -8.06 Total: -123.43 kcal Atomic # 8 Polarization: -54.51 SS G_CDS: -0.05 Total: -54.57 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.95 kcal Total: -82.37 -0.01 -82.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567872773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.499 kcal (2) G-P(sol) polarization free energy of solvation -82.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds