Wall clock time and date at job start Tue Mar 31 2020 20:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47221 * 2 1 4 4 C 1.38023 * 119.51659 * 125.00065 * 3 2 1 5 5 C 1.39923 * 119.13244 * 180.02562 * 4 3 2 6 6 C 1.48168 * 120.88968 * 179.97438 * 5 4 3 7 7 O 1.21514 * 120.00104 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00204 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00376 * 183.44656 * 8 6 5 10 10 C 1.52993 * 113.27883 * 306.25209 * 9 8 6 11 11 C 1.53001 * 109.47347 * 292.15436 * 10 9 8 12 12 O 1.42901 * 109.47537 * 184.81426 * 11 10 9 13 13 C 1.53498 * 114.20813 * 173.18176 * 9 8 6 14 14 N 1.47069 * 87.98356 * 220.14754 * 13 9 8 15 15 C 1.36929 * 136.05763 * 207.07721 * 14 13 9 16 16 H 1.08010 * 120.00103 * 354.43451 * 15 14 13 17 17 C 1.38811 * 120.00347 * 174.42269 * 15 14 13 18 18 N 1.31617 * 120.00205 * 182.15975 * 17 15 14 19 19 Si 1.86802 * 119.99860 * 2.43848 * 17 15 14 20 20 H 1.48501 * 109.47360 * 173.50812 * 19 17 15 21 21 H 1.48502 * 109.47224 * 293.51222 * 19 17 15 22 22 H 1.48501 * 109.46848 * 53.50932 * 19 17 15 23 23 C 1.47069 * 87.88667 * 27.34287 * 14 13 9 24 24 C 1.39614 * 118.22009 * 0.24995 * 5 4 3 25 25 C 1.38847 * 118.94576 * 359.50326 * 24 5 4 26 26 O 1.35688 * 119.62342 * 180.25189 * 25 24 5 27 27 N 1.31890 * 119.51375 * 305.02068 * 3 2 1 28 28 H 1.08998 * 109.46948 * 60.00004 * 1 2 3 29 29 H 1.08998 * 109.47439 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47227 * 300.00053 * 1 2 3 31 31 H 1.08998 * 109.47217 * 239.99526 * 2 1 3 32 32 H 1.09002 * 109.47336 * 119.99685 * 2 1 3 33 33 H 1.07994 * 120.43019 * 0.03907 * 4 3 2 34 34 H 0.96998 * 119.99653 * 3.44141 * 8 6 5 35 35 H 1.08996 * 109.47553 * 52.15627 * 10 9 8 36 36 H 1.09009 * 109.46940 * 172.15656 * 10 9 8 37 37 H 1.09005 * 109.46915 * 304.81602 * 11 10 9 38 38 H 1.08996 * 109.46910 * 64.80611 * 11 10 9 39 39 H 0.96699 * 113.99474 * 180.02562 * 12 11 10 40 40 H 1.08997 * 113.46702 * 105.36437 * 13 9 8 41 41 H 1.08997 * 113.51673 * 334.93761 * 13 9 8 42 42 H 0.96997 * 120.00169 * 5.30122 * 18 17 15 43 43 H 1.09006 * 113.46688 * 87.43221 * 23 14 13 44 44 H 1.08990 * 113.47118 * 217.87595 * 23 14 13 45 45 H 1.08003 * 120.52531 * 179.75023 * 24 5 4 46 46 H 0.96701 * 113.99613 * 270.26021 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3695 3.1533 0.9765 6 6 4.3102 3.6365 2.0142 7 8 4.6914 2.8823 2.8874 8 7 4.7424 4.9129 1.9903 9 6 5.7303 5.3703 2.9707 10 6 5.3172 5.0966 4.4181 11 6 4.1133 5.9692 4.7787 12 8 3.7972 5.7971 6.1616 13 6 6.2509 6.7929 2.7229 14 7 7.5894 6.3125 3.0978 15 6 8.7215 6.8664 3.6331 16 1 8.7759 7.9327 3.7964 17 6 9.7993 6.0575 3.9661 18 7 10.8710 6.5840 4.5198 19 14 9.7318 4.2228 3.6211 20 1 11.0528 3.6139 3.9201 21 1 8.6927 3.5961 4.4772 22 1 9.3961 3.9999 2.1918 23 6 7.1791 4.9770 2.6385 24 6 2.9146 4.0056 -0.0314 25 6 2.0371 3.5091 -0.9861 26 8 1.5904 4.3240 -1.9748 27 7 1.6279 2.2529 -0.9399 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.2342 1.1434 1.7492 34 1 4.3994 5.5286 1.3239 35 1 5.0498 4.0456 4.5272 36 1 6.1482 5.3311 5.0836 37 1 4.3528 7.0154 4.5881 38 1 3.2572 5.6761 4.1710 39 1 3.0418 6.3215 6.4606 40 1 5.8447 7.5304 3.4151 41 1 6.1784 7.1074 1.6818 42 1 10.8787 7.5222 4.7657 43 1 7.3511 4.8119 1.5748 44 1 7.5638 4.1675 3.2588 45 1 3.2432 5.0337 -0.0702 46 1 0.7786 4.8011 -1.7544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570761325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:02 Heat of formation + Delta-G solvation = -22.610780 kcal Electronic energy + Delta-G solvation = -29413.571956 eV Core-core repulsion = 25306.137745 eV Total energy + Delta-G solvation = -4107.434211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21161 -40.22610 -38.40039 -37.56331 -36.59875 -34.52862 -33.87135 -32.67104 -32.07230 -30.62716 -29.72268 -27.43523 -25.76921 -25.52063 -24.26028 -23.13792 -22.67696 -21.56717 -20.26783 -19.24658 -18.97624 -17.60077 -17.47506 -17.38521 -16.98848 -16.08495 -16.01750 -15.78838 -15.39444 -15.03346 -14.68824 -14.65119 -14.47852 -14.18942 -13.96131 -13.58106 -13.41654 -13.15210 -12.79614 -12.30566 -12.27963 -12.15481 -12.04485 -11.94288 -11.81056 -11.62169 -11.40545 -11.28718 -10.91240 -10.55224 -10.45700 -10.20501 -10.14303 -9.85801 -9.58769 -9.40574 -9.20266 -9.17431 -8.98143 -8.77966 -7.26079 -6.35958 -3.31793 0.36875 0.58669 2.62724 2.91500 3.13538 3.44370 3.45950 3.46918 3.65561 4.03439 4.16715 4.30686 4.56478 4.56878 4.59645 4.62824 4.81250 4.82962 4.88413 4.96011 5.09330 5.29295 5.32947 5.34114 5.41180 5.42259 5.54058 5.55349 5.62466 5.66184 5.76989 5.85115 5.90035 5.98558 6.06803 6.12666 6.16326 6.26004 6.46649 6.62243 6.85170 6.94892 7.06101 7.43853 7.50794 7.73230 8.10434 8.16990 8.90475 9.41842 10.23658 11.15321 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.003143 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.163100 B = 8905.992096 C = 9200.262815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C 0.152 3.848 4 C -0.124 4.124 5 C -0.062 4.062 6 C 0.556 3.444 7 O -0.514 6.514 8 N -0.705 5.705 9 C 0.133 3.867 10 C -0.107 4.107 11 C 0.084 3.916 12 O -0.571 6.571 13 C 0.123 3.877 14 N -0.615 5.615 15 C -0.305 4.305 16 H 0.085 0.915 17 C -0.018 4.018 18 N -0.930 5.930 19 Si 1.067 2.933 20 H -0.294 1.294 21 H -0.287 1.287 22 H -0.290 1.290 23 C 0.096 3.904 24 C -0.163 4.163 25 C 0.312 3.688 26 O -0.479 6.479 27 N -0.487 5.487 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.153 0.847 34 H 0.399 0.601 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.373 0.627 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.262 0.738 43 H 0.047 0.953 44 H 0.062 0.938 45 H 0.145 0.855 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.739 -6.580 -9.216 27.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C 0.014 3.986 4 C -0.145 4.145 5 C -0.073 4.073 6 C 0.341 3.659 7 O -0.389 6.389 8 N -0.357 5.357 9 C 0.046 3.954 10 C -0.145 4.145 11 C 0.007 3.993 12 O -0.375 6.375 13 C -0.004 4.004 14 N -0.343 5.343 15 C -0.431 4.431 16 H 0.103 0.897 17 C -0.217 4.217 18 N -0.571 5.571 19 Si 0.900 3.100 20 H -0.221 1.221 21 H -0.215 1.215 22 H -0.218 1.218 23 C -0.030 4.030 24 C -0.185 4.185 25 C 0.133 3.867 26 O -0.286 6.286 27 N -0.207 5.207 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.171 0.829 34 H 0.234 0.766 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.219 0.781 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.163 0.837 46 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -22.846 -9.204 -9.382 26.357 hybrid contribution -1.339 2.885 0.026 3.181 sum -24.185 -6.319 -9.356 26.690 Atomic orbital electron populations 1.21678 0.93882 1.01969 1.02625 1.20557 0.97208 0.89670 1.03814 1.21010 0.92708 0.95877 0.88975 1.22178 0.96634 0.95628 1.00023 1.20415 0.96963 0.94552 0.95392 1.18108 0.80790 0.82523 0.84486 1.90775 1.57010 1.55187 1.35953 1.45937 1.44271 1.10886 1.34586 1.22574 0.87021 0.97450 0.88330 1.21453 0.98123 1.01954 0.92971 1.22099 0.96811 0.98792 0.81608 1.86529 1.53952 1.70885 1.26156 1.22631 0.86733 0.92716 0.98328 1.45740 1.11003 1.05663 1.71940 1.20100 0.91373 0.93671 1.37932 0.89711 1.25674 0.92132 1.05674 0.98219 1.70927 1.27865 1.15319 1.43017 0.83757 0.74590 0.75565 0.76134 1.22095 1.21497 1.21755 1.23184 0.90198 0.91418 0.98243 1.22298 1.00426 1.01543 0.94189 1.18925 0.93458 0.87275 0.87010 1.84825 1.46715 1.58101 1.38925 1.66766 1.25797 1.03981 1.24174 0.91605 0.92089 0.92816 0.89544 0.89629 0.82899 0.76589 0.88666 0.88756 0.93628 0.94672 0.78129 0.92564 0.93985 0.92803 0.93561 0.92043 0.83697 0.74142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.77 37.16 0.36 -0.58 16 2 C -0.07 -0.54 6.33 -27.89 -0.18 -0.72 16 3 C 0.15 1.50 6.18 -82.65 -0.51 0.99 16 4 C -0.12 -1.33 9.27 -39.03 -0.36 -1.69 16 5 C -0.06 -0.71 5.91 -104.67 -0.62 -1.33 16 6 C 0.56 7.88 7.60 -12.18 -0.09 7.79 16 7 O -0.51 -9.10 14.20 5.35 0.08 -9.03 16 8 N -0.70 -9.35 5.20 -48.13 -0.25 -9.60 16 9 C 0.13 2.29 0.82 -131.57 -0.11 2.18 16 10 C -0.11 -1.94 4.91 -26.73 -0.13 -2.07 16 11 C 0.08 1.23 6.89 37.16 0.26 1.48 16 12 O -0.57 -8.42 13.66 -35.23 -0.48 -8.90 16 13 C 0.12 2.23 7.81 -8.50 -0.07 2.16 16 14 N -0.62 -14.75 3.46 -184.55 -0.64 -15.38 16 15 C -0.30 -8.64 11.09 -15.06 -0.17 -8.81 16 16 H 0.09 2.51 8.05 -52.48 -0.42 2.08 16 17 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 18 N -0.93 -29.32 13.70 55.49 0.76 -28.56 16 19 Si 1.07 27.66 25.05 -169.99 -4.26 23.40 16 20 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 21 H -0.29 -7.22 6.51 56.52 0.37 -6.85 16 22 H -0.29 -7.12 6.53 56.52 0.37 -6.75 16 23 C 0.10 2.08 5.30 -8.36 -0.04 2.04 16 24 C -0.16 -1.54 9.55 -38.84 -0.37 -1.91 16 25 C 0.31 3.12 7.74 -17.17 -0.13 2.98 16 26 O -0.48 -3.95 13.56 -18.77 -0.25 -4.21 16 27 N -0.49 -5.27 9.87 -9.60 -0.09 -5.37 16 28 H 0.06 0.49 7.94 -51.93 -0.41 0.08 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.50 7.86 -51.93 -0.41 0.09 16 33 H 0.15 1.57 7.62 -52.49 -0.40 1.17 16 34 H 0.40 3.91 6.83 -40.82 -0.28 3.63 16 35 H 0.10 1.85 5.78 -51.93 -0.30 1.55 16 36 H 0.09 2.03 7.94 -51.92 -0.41 1.62 16 37 H 0.05 0.62 6.63 -51.93 -0.34 0.28 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.37 3.42 9.12 45.56 0.42 3.84 16 40 H 0.06 0.97 6.70 -51.93 -0.35 0.62 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 43 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 44 H 0.06 1.47 3.99 -51.93 -0.21 1.26 16 45 H 0.15 1.02 6.54 -52.48 -0.34 0.68 16 46 H 0.40 1.23 9.06 45.56 0.41 1.64 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -37.30 375.04 -6.55 -43.85 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.80 Total: 6.25 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.26 Total: 1.89 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.22 Total: -58.91 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.66 Total: -22.14 kcal Atomic # 14 Polarization: 27.66 SS G_CDS: -4.26 Total: 23.40 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.30 -6.55 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570761325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.239 kcal (2) G-P(sol) polarization free energy of solvation -37.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds