Wall clock time and date at job start Tue Mar 31 2020 20:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47221 * 2 1 4 4 C 1.38023 * 119.51659 * 125.00065 * 3 2 1 5 5 C 1.39923 * 119.13244 * 180.02562 * 4 3 2 6 6 C 1.48168 * 120.88968 * 179.97438 * 5 4 3 7 7 O 1.21514 * 120.00104 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00204 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00376 * 183.44656 * 8 6 5 10 10 C 1.52993 * 113.27883 * 306.25209 * 9 8 6 11 11 C 1.53001 * 109.47347 * 292.15436 * 10 9 8 12 12 O 1.42901 * 109.47537 * 184.81426 * 11 10 9 13 13 C 1.53498 * 114.20813 * 173.18176 * 9 8 6 14 14 N 1.47069 * 87.98356 * 220.14754 * 13 9 8 15 15 C 1.36929 * 136.05763 * 207.07721 * 14 13 9 16 16 H 1.08010 * 120.00103 * 354.43451 * 15 14 13 17 17 C 1.38811 * 120.00347 * 174.42269 * 15 14 13 18 18 N 1.31617 * 120.00205 * 182.15975 * 17 15 14 19 19 Si 1.86802 * 119.99860 * 2.43848 * 17 15 14 20 20 H 1.48501 * 109.47360 * 173.50812 * 19 17 15 21 21 H 1.48502 * 109.47224 * 293.51222 * 19 17 15 22 22 H 1.48501 * 109.46848 * 53.50932 * 19 17 15 23 23 C 1.47069 * 87.88667 * 27.34287 * 14 13 9 24 24 C 1.39614 * 118.22009 * 0.24995 * 5 4 3 25 25 C 1.38847 * 118.94576 * 359.50326 * 24 5 4 26 26 O 1.35688 * 119.62342 * 180.25189 * 25 24 5 27 27 N 1.31890 * 119.51375 * 305.02068 * 3 2 1 28 28 H 1.08998 * 109.46948 * 60.00004 * 1 2 3 29 29 H 1.08998 * 109.47439 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47227 * 300.00053 * 1 2 3 31 31 H 1.08998 * 109.47217 * 239.99526 * 2 1 3 32 32 H 1.09002 * 109.47336 * 119.99685 * 2 1 3 33 33 H 1.07994 * 120.43019 * 0.03907 * 4 3 2 34 34 H 0.96998 * 119.99653 * 3.44141 * 8 6 5 35 35 H 1.08996 * 109.47553 * 52.15627 * 10 9 8 36 36 H 1.09009 * 109.46940 * 172.15656 * 10 9 8 37 37 H 1.09005 * 109.46915 * 304.81602 * 11 10 9 38 38 H 1.08996 * 109.46910 * 64.80611 * 11 10 9 39 39 H 0.96699 * 113.99474 * 180.02562 * 12 11 10 40 40 H 1.08997 * 113.46702 * 105.36437 * 13 9 8 41 41 H 1.08997 * 113.51673 * 334.93761 * 13 9 8 42 42 H 0.96997 * 120.00169 * 5.30122 * 18 17 15 43 43 H 1.09006 * 113.46688 * 87.43221 * 23 14 13 44 44 H 1.08990 * 113.47118 * 217.87595 * 23 14 13 45 45 H 1.08003 * 120.52531 * 179.75023 * 24 5 4 46 46 H 0.96701 * 113.99613 * 270.26021 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3695 3.1533 0.9765 6 6 4.3102 3.6365 2.0142 7 8 4.6914 2.8823 2.8874 8 7 4.7424 4.9129 1.9903 9 6 5.7303 5.3703 2.9707 10 6 5.3172 5.0966 4.4181 11 6 4.1133 5.9692 4.7787 12 8 3.7972 5.7971 6.1616 13 6 6.2509 6.7929 2.7229 14 7 7.5894 6.3125 3.0978 15 6 8.7215 6.8664 3.6331 16 1 8.7759 7.9327 3.7964 17 6 9.7993 6.0575 3.9661 18 7 10.8710 6.5840 4.5198 19 14 9.7318 4.2228 3.6211 20 1 11.0528 3.6139 3.9201 21 1 8.6927 3.5961 4.4772 22 1 9.3961 3.9999 2.1918 23 6 7.1791 4.9770 2.6385 24 6 2.9146 4.0056 -0.0314 25 6 2.0371 3.5091 -0.9861 26 8 1.5904 4.3240 -1.9748 27 7 1.6279 2.2529 -0.9399 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.2342 1.1434 1.7492 34 1 4.3994 5.5286 1.3239 35 1 5.0498 4.0456 4.5272 36 1 6.1482 5.3311 5.0836 37 1 4.3528 7.0154 4.5881 38 1 3.2572 5.6761 4.1710 39 1 3.0418 6.3215 6.4606 40 1 5.8447 7.5304 3.4151 41 1 6.1784 7.1074 1.6818 42 1 10.8787 7.5222 4.7657 43 1 7.3511 4.8119 1.5748 44 1 7.5638 4.1675 3.2588 45 1 3.2432 5.0337 -0.0702 46 1 0.7786 4.8011 -1.7544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570761325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:02 Heat of formation + Delta-G solvation = -57.186119 kcal Electronic energy + Delta-G solvation = -29415.071255 eV Core-core repulsion = 25306.137745 eV Total energy + Delta-G solvation = -4108.933510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18757 -41.39754 -39.68228 -38.24816 -37.77350 -35.65906 -35.04176 -34.14910 -33.27049 -31.98117 -30.42191 -29.24477 -27.37071 -26.45284 -25.19148 -24.32632 -23.57454 -23.08024 -21.40255 -20.63076 -19.83734 -19.56498 -18.56988 -18.37827 -18.01405 -17.24082 -17.03276 -16.82608 -16.70290 -16.25489 -15.93221 -15.67053 -15.44439 -15.20683 -15.13712 -15.11035 -14.96747 -14.16366 -13.88608 -13.58918 -13.51195 -13.47835 -13.20757 -12.89236 -12.85660 -12.74386 -12.59816 -12.36943 -12.35741 -12.01474 -11.93756 -11.41201 -11.32670 -11.27569 -11.07719 -11.02390 -10.76502 -10.46704 -10.20924 -9.90752 -9.28655 -8.66252 -5.53039 -0.47166 -0.12555 1.33380 1.39836 1.57905 1.65790 1.77283 2.44061 2.44171 2.65801 2.86374 2.99448 3.14248 3.32599 3.42430 3.48333 3.84833 3.87737 4.00493 4.09627 4.17347 4.20342 4.26107 4.31638 4.41916 4.43687 4.46401 4.49393 4.52598 4.67217 4.73210 4.79535 4.83354 4.93398 4.98599 5.08495 5.10560 5.18461 5.20176 5.31731 5.46417 5.48304 5.90366 6.37992 6.57313 6.64623 6.82849 6.89946 7.03387 7.26086 8.16668 8.87640 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.003143 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.163100 B = 8905.992096 C = 9200.262815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C 0.150 3.850 4 C -0.133 4.133 5 C -0.072 4.072 6 C 0.559 3.441 7 O -0.553 6.553 8 N -0.689 5.689 9 C 0.161 3.839 10 C -0.107 4.107 11 C 0.093 3.907 12 O -0.595 6.595 13 C 0.129 3.871 14 N -0.647 5.647 15 C -0.279 4.279 16 H 0.064 0.936 17 C -0.076 4.076 18 N -0.970 5.970 19 Si 1.102 2.898 20 H -0.302 1.302 21 H -0.286 1.286 22 H -0.269 1.269 23 C 0.083 3.917 24 C -0.152 4.152 25 C 0.311 3.689 26 O -0.485 6.485 27 N -0.502 5.502 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.152 0.848 34 H 0.420 0.580 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.398 0.602 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.251 0.749 43 H 0.058 0.942 44 H 0.037 0.963 45 H 0.172 0.828 46 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.041 -6.591 -11.282 30.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C 0.013 3.987 4 C -0.153 4.153 5 C -0.083 4.083 6 C 0.346 3.654 7 O -0.431 6.431 8 N -0.343 5.343 9 C 0.073 3.927 10 C -0.145 4.145 11 C 0.015 3.985 12 O -0.403 6.403 13 C 0.004 3.996 14 N -0.376 5.376 15 C -0.407 4.407 16 H 0.082 0.918 17 C -0.269 4.269 18 N -0.615 5.615 19 Si 0.932 3.068 20 H -0.230 1.230 21 H -0.213 1.213 22 H -0.195 1.195 23 C -0.043 4.043 24 C -0.174 4.174 25 C 0.132 3.868 26 O -0.295 6.295 27 N -0.223 5.223 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.169 0.831 34 H 0.260 0.740 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.248 0.752 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.190 0.810 46 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -26.266 -9.171 -11.504 30.106 hybrid contribution -0.493 2.933 0.612 3.036 sum -26.759 -6.238 -10.891 29.556 Atomic orbital electron populations 1.21639 0.93324 1.02794 1.01928 1.20671 0.97630 0.88393 1.04709 1.21319 0.92216 0.96788 0.88374 1.22263 0.97040 0.95624 1.00408 1.20154 0.97368 0.95232 0.95538 1.18460 0.80484 0.82089 0.84347 1.90774 1.58453 1.56199 1.37667 1.45591 1.43192 1.11275 1.34210 1.21843 0.85816 0.96396 0.88650 1.21361 0.98339 1.01959 0.92855 1.21986 0.95940 0.98474 0.82071 1.86469 1.55619 1.71915 1.26314 1.22854 0.83153 0.93282 1.00320 1.45723 1.11849 1.07510 1.72510 1.19982 0.92473 0.92709 1.35539 0.91789 1.26640 0.92528 1.08602 0.99147 1.70995 1.29543 1.14753 1.46213 0.83279 0.74012 0.72322 0.77231 1.22966 1.21344 1.19514 1.23381 0.93202 0.89600 0.98153 1.22455 0.99501 1.02370 0.93029 1.19079 0.93349 0.87273 0.87109 1.84782 1.48215 1.58020 1.38517 1.66843 1.26235 1.04625 1.24560 0.92641 0.90541 0.93090 0.89072 0.88302 0.83076 0.74024 0.90257 0.93020 0.92335 0.92052 0.75249 0.91234 0.90361 0.94003 0.92442 0.94513 0.81020 0.71523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.77 71.98 0.70 -0.87 16 2 C -0.08 -0.96 6.33 29.85 0.19 -0.78 16 3 C 0.15 2.69 6.18 42.50 0.26 2.95 16 4 C -0.13 -2.63 9.27 22.63 0.21 -2.42 16 5 C -0.07 -1.47 5.91 -19.90 -0.12 -1.58 16 6 C 0.56 14.60 7.60 86.88 0.66 15.26 16 7 O -0.55 -19.13 14.20 -3.76 -0.05 -19.18 16 8 N -0.69 -15.96 5.20 -424.49 -2.21 -18.16 16 9 C 0.16 5.19 0.82 4.16 0.00 5.20 16 10 C -0.11 -3.78 4.91 30.59 0.15 -3.63 16 11 C 0.09 2.45 6.89 71.98 0.50 2.95 16 12 O -0.59 -16.43 13.66 -148.98 -2.04 -18.46 16 13 C 0.13 4.29 7.81 83.18 0.65 4.94 16 14 N -0.65 -30.43 3.46 -737.78 -2.56 -32.98 16 15 C -0.28 -16.04 11.09 84.03 0.93 -15.11 16 16 H 0.06 3.87 8.05 -2.91 -0.02 3.85 16 17 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 18 N -0.97 -63.33 13.70 21.65 0.30 -63.03 16 19 Si 1.10 57.43 25.05 68.60 1.72 59.14 16 20 H -0.30 -15.91 7.11 99.48 0.71 -15.20 16 21 H -0.29 -14.57 6.51 99.48 0.65 -13.92 16 22 H -0.27 -12.86 6.53 99.48 0.65 -12.21 16 23 C 0.08 3.48 5.30 83.27 0.44 3.92 16 24 C -0.15 -2.33 9.55 22.75 0.22 -2.11 16 25 C 0.31 5.24 7.74 84.78 0.66 5.89 16 26 O -0.48 -6.33 13.56 -90.07 -1.22 -7.55 16 27 N -0.50 -9.69 9.87 -297.16 -2.93 -12.63 16 28 H 0.05 0.74 7.94 -2.39 -0.02 0.72 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 0.97 7.86 -2.39 -0.02 0.95 16 33 H 0.15 2.98 7.62 -2.91 -0.02 2.96 16 34 H 0.42 6.18 6.83 -92.71 -0.63 5.55 16 35 H 0.08 3.08 5.78 -2.39 -0.01 3.07 16 36 H 0.05 2.26 7.94 -2.38 -0.02 2.24 16 37 H 0.06 1.40 6.63 -2.38 -0.02 1.38 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.40 6.26 9.12 -74.06 -0.68 5.59 16 40 H 0.07 2.16 6.70 -2.39 -0.02 2.14 16 41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.25 16.23 8.73 -92.71 -0.81 15.42 16 43 H 0.06 2.31 8.07 -2.38 -0.02 2.29 16 44 H 0.04 1.75 3.99 -2.39 -0.01 1.74 16 45 H 0.17 1.56 6.54 -2.91 -0.02 1.54 16 46 H 0.42 1.06 9.06 -74.06 -0.67 0.39 16 Total: -1.00 -84.16 375.04 -4.15 -88.31 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -1.08 Total: 14.12 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.92 Total: 10.43 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -7.40 Total: -126.80 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -3.31 Total: -45.20 kcal Atomic # 14 Polarization: 57.43 SS G_CDS: 1.72 Total: 59.14 kcal Total: -84.16 -4.15 -88.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570761325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.120 kcal (2) G-P(sol) polarization free energy of solvation -84.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds