Wall clock time and date at job start Tue Mar 31 2020 19:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35130 * 125.61199 * 2 1 4 4 C 1.40362 * 107.11568 * 180.02562 * 3 2 1 5 5 C 1.36544 * 106.70737 * 359.97438 * 4 3 2 6 6 C 1.46659 * 125.99008 * 179.97438 * 5 4 3 7 7 O 1.21691 * 119.99918 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00305 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00445 * 179.97438 * 8 6 5 10 10 H 1.08992 * 112.84741 * 336.19923 * 9 8 6 11 11 C 1.53787 * 113.61388 * 107.50232 * 9 8 6 12 12 C 1.53774 * 87.08046 * 89.11561 * 11 9 8 13 13 H 1.08999 * 113.69596 * 270.87093 * 12 11 9 14 14 C 1.53004 * 113.61263 * 139.97954 * 12 11 9 15 15 N 1.46901 * 109.46916 * 87.50246 * 14 12 11 16 16 C 1.46905 * 110.99870 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.47066 * 180.02562 * 16 15 14 18 18 O 1.21297 * 120.00124 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00196 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00290 * 180.02562 * 19 17 16 21 21 H 1.07990 * 119.99768 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99812 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00264 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99477 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47122 * 60.00193 * 24 22 20 26 26 H 1.48505 * 109.46659 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47203 * 299.99881 * 24 22 20 28 28 C 1.53776 * 113.61720 * 204.99710 * 9 8 6 29 29 O 1.33925 * 125.61843 * 180.29010 * 2 1 3 30 30 H 1.08991 * 109.47308 * 90.00412 * 1 2 3 31 31 H 1.09000 * 109.46806 * 210.00201 * 1 2 3 32 32 H 1.09001 * 109.47531 * 330.00113 * 1 2 3 33 33 H 1.08000 * 126.44299 * 0.02562 * 3 2 1 34 34 H 1.07999 * 126.65032 * 180.02562 * 4 3 2 35 35 H 0.97006 * 119.99318 * 359.97438 * 8 6 5 36 36 H 1.09004 * 113.61207 * 334.57037 * 11 9 8 37 37 H 1.08994 * 113.61420 * 203.66812 * 11 9 8 38 38 H 1.09004 * 109.46889 * 327.50627 * 14 12 11 39 39 H 1.08995 * 109.47384 * 207.50267 * 14 12 11 40 40 H 1.00901 * 111.00067 * 303.95263 * 15 14 12 41 41 H 1.09001 * 109.46798 * 300.00327 * 16 15 14 42 42 H 1.08998 * 109.46961 * 60.00043 * 16 15 14 43 43 H 0.97009 * 119.99629 * 359.97438 * 19 17 16 44 44 H 0.96997 * 120.00444 * 179.97438 * 23 22 20 45 45 H 1.08998 * 113.61454 * 156.33629 * 28 9 8 46 46 H 1.09003 * 113.68742 * 25.44564 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0986 0.0000 4 6 3.6250 0.6533 -0.0006 5 6 3.5823 -0.7115 -0.0004 6 6 4.7415 -1.6099 -0.0013 7 8 5.8680 -1.1497 -0.0029 8 7 4.5591 -2.9453 -0.0015 9 6 5.7170 -3.8428 -0.0030 10 1 6.6140 -3.3756 -0.4092 11 6 5.9458 -4.5555 1.3404 12 6 5.0175 -5.6655 0.8200 13 1 3.9644 -5.4975 1.0455 14 6 5.4852 -7.0762 1.1836 15 7 4.9524 -7.4439 2.5023 16 6 5.3825 -8.7953 2.8856 17 6 4.8173 -9.1369 4.2402 18 8 4.1241 -8.3339 4.8283 19 7 5.0822 -10.3347 4.7983 20 6 4.5677 -10.6458 6.0305 21 1 3.9504 -9.9308 6.5540 22 6 4.8413 -11.8806 6.6061 23 7 5.5927 -12.7503 5.9692 24 14 4.1407 -12.3040 8.2852 25 1 2.6576 -12.2548 8.2295 26 1 4.5760 -13.6698 8.6730 27 1 4.6312 -11.3243 9.2876 28 6 5.4209 -5.2293 -0.5984 29 8 2.2869 -1.0887 -0.0055 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.9611 2.1260 0.0004 34 1 4.5112 1.2705 -0.0004 35 1 3.6611 -3.3121 -0.0006 36 1 5.5420 -4.0142 2.1961 37 1 6.9746 -4.8819 1.4918 38 1 6.5746 -7.1017 1.2119 39 1 5.1245 -7.7826 0.4361 40 1 5.2198 -6.7677 3.2018 41 1 5.0214 -9.5139 2.1499 42 1 6.4711 -8.8324 2.9258 43 1 5.6364 -10.9771 4.3279 44 1 5.7840 -13.6121 6.3712 45 1 6.3063 -5.7401 -0.9771 46 1 4.5938 -5.2335 -1.3084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571082477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:10 Heat of formation + Delta-G solvation = -39.891587 kcal Electronic energy + Delta-G solvation = -27176.018895 eV Core-core repulsion = 23067.835332 eV Total energy + Delta-G solvation = -4108.183563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.09217 -40.45407 -38.72543 -38.12413 -35.26524 -34.01399 -33.75030 -33.17728 -32.34118 -31.20766 -28.78206 -27.58046 -26.00212 -25.56123 -23.91697 -22.97736 -22.02125 -21.92733 -20.67396 -19.55359 -19.09403 -18.71354 -17.87045 -16.88183 -16.53145 -16.13339 -15.91289 -15.54628 -15.25818 -14.93317 -14.59191 -14.44948 -14.14056 -13.99272 -13.70305 -13.63613 -13.50627 -13.44077 -13.37832 -13.03358 -12.93933 -12.65440 -12.38921 -12.30340 -11.74030 -11.55516 -11.49204 -11.06455 -10.97514 -10.65736 -10.59551 -10.43515 -10.42607 -10.29890 -10.19653 -9.48998 -9.43656 -8.86854 -8.44386 -8.03374 -7.94504 -6.40574 -3.81426 0.66245 1.92302 2.19189 2.79067 2.83741 3.20921 3.26346 3.30921 3.92431 4.06874 4.13529 4.25125 4.26603 4.46641 4.50730 4.53386 4.64626 4.82411 4.85764 4.93549 5.14423 5.15051 5.23177 5.26342 5.32191 5.41390 5.45643 5.48010 5.52307 5.56931 5.59736 5.70654 5.80209 5.86745 5.96417 5.98109 6.00284 6.02739 6.27359 6.34280 6.47752 7.11323 7.25920 7.55981 7.70121 7.73143 8.07464 8.62692 9.18935 9.55629 10.07353 10.77101 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.001709 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.056061 B =16383.145019 C =17475.220881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.023 3.977 3 C -0.226 4.226 4 C -0.114 4.114 5 C -0.084 4.084 6 C 0.608 3.392 7 O -0.520 6.520 8 N -0.700 5.700 9 C 0.118 3.882 10 H 0.105 0.895 11 C -0.150 4.150 12 C -0.106 4.106 13 H 0.100 0.900 14 C 0.068 3.932 15 N -0.669 5.669 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.138 4.138 29 O -0.162 6.162 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.407 0.593 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.349 0.651 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.097 0.903 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 22.607 -17.758 29.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.245 4.245 4 C -0.135 4.135 5 C -0.136 4.136 6 C 0.394 3.606 7 O -0.398 6.398 8 N -0.350 5.350 9 C 0.013 3.987 10 H 0.123 0.877 11 C -0.189 4.189 12 C -0.125 4.125 13 H 0.118 0.882 14 C -0.061 4.061 15 N -0.301 5.301 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.177 4.177 29 O -0.058 6.058 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.243 0.757 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.168 0.832 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.116 0.884 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.571 22.724 -17.546 29.071 hybrid contribution 0.594 -0.613 0.799 1.169 sum -3.978 22.111 -16.747 28.021 Atomic orbital electron populations 1.20450 0.84396 1.04780 1.04065 1.22876 0.94373 0.84026 1.01675 1.21612 0.92307 0.99904 1.10645 1.21963 0.98701 0.92913 0.99879 1.21985 0.81883 0.94618 1.15097 1.16511 0.86058 0.81498 0.76516 1.90886 1.22090 1.76109 1.50726 1.45570 1.10324 1.05069 1.74030 1.21907 0.89284 0.89549 0.97949 0.87708 1.23538 1.00706 0.97230 0.97385 1.22640 1.00586 0.94130 0.95154 0.88193 1.21949 0.96376 0.95508 0.92271 1.60096 1.63217 1.03116 1.03670 1.21672 0.97545 0.91851 0.97191 1.19834 0.86087 0.83856 0.87625 1.90520 1.42132 1.49664 1.64474 1.41862 1.45913 1.14039 1.18254 1.19658 1.28701 1.00506 0.94083 0.87993 1.25262 0.97078 0.95616 0.99993 1.69601 1.37641 1.08017 1.39092 0.85915 0.79295 0.77373 0.81609 1.19895 1.20984 1.19930 1.23344 1.02673 0.94655 0.97029 1.84007 1.15930 1.35034 1.70848 0.89470 0.89894 0.88813 0.82570 0.82181 0.75721 0.90759 0.88988 0.95343 0.91014 0.83213 0.89659 0.93962 0.77459 0.91838 0.88443 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.41 36.01 0.37 0.07 16 2 C 0.02 0.17 7.31 -35.41 -0.26 -0.09 16 3 C -0.23 -1.68 10.77 -39.89 -0.43 -2.11 16 4 C -0.11 -1.07 10.62 -39.39 -0.42 -1.49 16 5 C -0.08 -0.88 7.13 -36.80 -0.26 -1.14 16 6 C 0.61 7.02 7.79 -12.86 -0.10 6.92 16 7 O -0.52 -7.47 16.46 5.20 0.09 -7.38 16 8 N -0.70 -6.64 5.26 -54.33 -0.29 -6.93 16 9 C 0.12 1.09 4.33 -67.12 -0.29 0.80 16 10 H 0.10 1.04 7.46 -51.93 -0.39 0.65 16 11 C -0.15 -1.49 7.43 -25.92 -0.19 -1.68 16 12 C -0.11 -1.05 3.78 -89.81 -0.34 -1.39 16 13 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 14 C 0.07 0.81 5.52 -3.82 -0.02 0.79 16 15 N -0.67 -10.81 6.13 -115.05 -0.70 -11.52 16 16 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 17 C 0.44 10.55 7.82 -10.99 -0.09 10.47 16 18 O -0.58 -16.09 15.78 5.54 0.09 -16.01 16 19 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 20 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 24 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 C -0.14 -1.07 7.39 -25.92 -0.19 -1.27 16 29 O -0.16 -1.54 10.40 4.99 0.05 -1.48 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.41 3.30 8.46 -40.82 -0.35 2.95 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.87 7.90 -51.93 -0.41 0.46 16 38 H 0.03 0.32 7.84 -51.93 -0.41 -0.09 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.35 5.91 8.43 -39.29 -0.33 5.58 16 41 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 44 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 45 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -34.14 395.83 -8.43 -42.57 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -6.79 Total: 14.43 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -2.49 Total: 2.65 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.32 Total: -56.91 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: 0.22 Total: -24.87 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.14 -8.43 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571082477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.683 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds