Wall clock time and date at job start Tue Mar 31 2020 19:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35130 * 125.61199 * 2 1 4 4 C 1.40362 * 107.11568 * 180.02562 * 3 2 1 5 5 C 1.36544 * 106.70737 * 359.97438 * 4 3 2 6 6 C 1.46659 * 125.99008 * 179.97438 * 5 4 3 7 7 O 1.21691 * 119.99918 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00305 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00445 * 179.97438 * 8 6 5 10 10 H 1.08992 * 112.84741 * 336.19923 * 9 8 6 11 11 C 1.53787 * 113.61388 * 107.50232 * 9 8 6 12 12 C 1.53774 * 87.08046 * 89.11561 * 11 9 8 13 13 H 1.08999 * 113.69596 * 270.87093 * 12 11 9 14 14 C 1.53004 * 113.61263 * 139.97954 * 12 11 9 15 15 N 1.46901 * 109.46916 * 87.50246 * 14 12 11 16 16 C 1.46905 * 110.99870 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.47066 * 180.02562 * 16 15 14 18 18 O 1.21297 * 120.00124 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00196 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00290 * 180.02562 * 19 17 16 21 21 H 1.07990 * 119.99768 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99812 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00264 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99477 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47122 * 60.00193 * 24 22 20 26 26 H 1.48505 * 109.46659 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47203 * 299.99881 * 24 22 20 28 28 C 1.53776 * 113.61720 * 204.99710 * 9 8 6 29 29 O 1.33925 * 125.61843 * 180.29010 * 2 1 3 30 30 H 1.08991 * 109.47308 * 90.00412 * 1 2 3 31 31 H 1.09000 * 109.46806 * 210.00201 * 1 2 3 32 32 H 1.09001 * 109.47531 * 330.00113 * 1 2 3 33 33 H 1.08000 * 126.44299 * 0.02562 * 3 2 1 34 34 H 1.07999 * 126.65032 * 180.02562 * 4 3 2 35 35 H 0.97006 * 119.99318 * 359.97438 * 8 6 5 36 36 H 1.09004 * 113.61207 * 334.57037 * 11 9 8 37 37 H 1.08994 * 113.61420 * 203.66812 * 11 9 8 38 38 H 1.09004 * 109.46889 * 327.50627 * 14 12 11 39 39 H 1.08995 * 109.47384 * 207.50267 * 14 12 11 40 40 H 1.00901 * 111.00067 * 303.95263 * 15 14 12 41 41 H 1.09001 * 109.46798 * 300.00327 * 16 15 14 42 42 H 1.08998 * 109.46961 * 60.00043 * 16 15 14 43 43 H 0.97009 * 119.99629 * 359.97438 * 19 17 16 44 44 H 0.96997 * 120.00444 * 179.97438 * 23 22 20 45 45 H 1.08998 * 113.61454 * 156.33629 * 28 9 8 46 46 H 1.09003 * 113.68742 * 25.44564 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0986 0.0000 4 6 3.6250 0.6533 -0.0006 5 6 3.5823 -0.7115 -0.0004 6 6 4.7415 -1.6099 -0.0013 7 8 5.8680 -1.1497 -0.0029 8 7 4.5591 -2.9453 -0.0015 9 6 5.7170 -3.8428 -0.0030 10 1 6.6140 -3.3756 -0.4092 11 6 5.9458 -4.5555 1.3404 12 6 5.0175 -5.6655 0.8200 13 1 3.9644 -5.4975 1.0455 14 6 5.4852 -7.0762 1.1836 15 7 4.9524 -7.4439 2.5023 16 6 5.3825 -8.7953 2.8856 17 6 4.8173 -9.1369 4.2402 18 8 4.1241 -8.3339 4.8283 19 7 5.0822 -10.3347 4.7983 20 6 4.5677 -10.6458 6.0305 21 1 3.9504 -9.9308 6.5540 22 6 4.8413 -11.8806 6.6061 23 7 5.5927 -12.7503 5.9692 24 14 4.1407 -12.3040 8.2852 25 1 2.6576 -12.2548 8.2295 26 1 4.5760 -13.6698 8.6730 27 1 4.6312 -11.3243 9.2876 28 6 5.4209 -5.2293 -0.5984 29 8 2.2869 -1.0887 -0.0055 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.9611 2.1260 0.0004 34 1 4.5112 1.2705 -0.0004 35 1 3.6611 -3.3121 -0.0006 36 1 5.5420 -4.0142 2.1961 37 1 6.9746 -4.8819 1.4918 38 1 6.5746 -7.1017 1.2119 39 1 5.1245 -7.7826 0.4361 40 1 5.2198 -6.7677 3.2018 41 1 5.0214 -9.5139 2.1499 42 1 6.4711 -8.8324 2.9258 43 1 5.6364 -10.9771 4.3279 44 1 5.7840 -13.6121 6.3712 45 1 6.3063 -5.7401 -0.9771 46 1 4.5938 -5.2335 -1.3084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571082477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:10 Heat of formation + Delta-G solvation = -65.355777 kcal Electronic energy + Delta-G solvation = -27177.123105 eV Core-core repulsion = 23067.835332 eV Total energy + Delta-G solvation = -4109.287773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.74738 -41.27766 -40.16294 -39.45819 -36.57147 -35.79674 -34.64446 -34.01826 -33.26473 -32.87969 -29.93034 -28.33963 -27.18718 -26.66699 -25.36000 -23.84479 -22.82287 -22.66952 -21.37485 -21.13739 -20.21387 -19.87219 -19.45878 -17.91302 -17.56577 -17.22501 -17.01633 -16.59499 -16.43710 -16.14800 -15.87433 -15.75045 -15.43053 -15.21925 -14.96348 -14.49097 -14.24269 -14.07745 -14.06278 -13.97862 -13.79223 -13.66394 -13.49834 -13.37075 -13.09231 -12.85252 -12.80388 -12.61055 -12.44107 -12.12952 -11.91046 -11.51096 -11.49014 -11.47041 -11.10844 -11.08680 -10.35363 -10.25283 -10.02357 -9.50294 -9.30109 -8.46981 -5.95976 -0.06639 1.30289 1.39578 1.41363 1.52393 1.52455 2.00958 2.04799 2.08427 2.29002 2.93215 3.20099 3.48105 3.50697 3.56880 3.73311 3.84699 3.88460 3.91682 3.96044 4.33098 4.44324 4.48003 4.50756 4.54468 4.57137 4.66347 4.71236 4.71751 4.75804 4.80172 4.82774 4.88882 4.91687 5.05233 5.11981 5.16150 5.19845 5.40077 5.42422 5.55795 5.81820 5.90576 6.13392 6.34148 6.42433 6.59809 6.91323 7.11920 7.55641 8.11182 8.70075 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.001709 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.056061 B =16383.145019 C =17475.220881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.025 3.975 3 C -0.231 4.231 4 C -0.119 4.119 5 C -0.114 4.114 6 C 0.605 3.395 7 O -0.559 6.559 8 N -0.692 5.692 9 C 0.115 3.885 10 H 0.098 0.902 11 C -0.151 4.151 12 C -0.103 4.103 13 H 0.089 0.911 14 C 0.070 3.930 15 N -0.685 5.685 16 C 0.065 3.935 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.269 1.269 27 H -0.272 1.272 28 C -0.118 4.118 29 O -0.172 6.172 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.184 0.816 34 H 0.163 0.837 35 H 0.414 0.586 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.341 0.659 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.115 0.885 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.006 22.583 -18.803 29.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.028 4.028 3 C -0.250 4.250 4 C -0.140 4.140 5 C -0.166 4.166 6 C 0.393 3.607 7 O -0.439 6.439 8 N -0.341 5.341 9 C 0.010 3.990 10 H 0.116 0.884 11 C -0.190 4.190 12 C -0.122 4.122 13 H 0.107 0.893 14 C -0.058 4.058 15 N -0.316 5.316 16 C -0.068 4.068 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.156 4.156 29 O -0.068 6.068 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.133 0.867 33 H 0.201 0.799 34 H 0.180 0.820 35 H 0.251 0.749 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.159 0.841 41 H 0.123 0.877 42 H 0.083 0.917 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.133 0.867 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.287 22.668 -18.627 29.812 hybrid contribution 0.754 -0.534 1.099 1.436 sum -4.533 22.134 -17.528 28.596 Atomic orbital electron populations 1.20675 0.81616 1.05902 1.05437 1.23710 0.95882 0.83514 0.99680 1.21952 0.91252 1.01320 1.10465 1.22239 0.99934 0.92756 0.99026 1.21848 0.82184 0.94870 1.17652 1.16699 0.85992 0.82075 0.75970 1.90848 1.23486 1.76794 1.52809 1.45547 1.10861 1.04619 1.73078 1.21943 0.89071 0.90157 0.97784 0.88365 1.23556 1.01052 0.97332 0.97010 1.22559 0.99844 0.93012 0.96794 0.89284 1.22061 0.97199 0.96545 0.90017 1.60117 1.64225 1.02090 1.05212 1.21542 0.98450 0.93300 0.93498 1.20947 0.84802 0.82591 0.89335 1.90487 1.43823 1.50681 1.66196 1.41933 1.46264 1.14895 1.17895 1.19634 1.30195 1.01070 0.95692 0.90399 1.26049 0.96953 0.94939 1.03320 1.69660 1.37721 1.08276 1.40338 0.84985 0.78521 0.77623 0.77173 1.19721 1.19390 1.19742 1.23278 1.03745 0.92810 0.95796 1.83995 1.15637 1.36032 1.71174 0.87809 0.89742 0.86683 0.79884 0.81976 0.74915 0.92693 0.88275 0.93884 0.89945 0.84097 0.87695 0.91673 0.76929 0.91262 0.86654 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.41 71.24 0.74 0.33 16 2 C 0.02 0.34 7.31 24.97 0.18 0.52 16 3 C -0.23 -3.15 10.77 22.07 0.24 -2.91 16 4 C -0.12 -2.24 10.62 22.39 0.24 -2.00 16 5 C -0.11 -2.46 7.13 24.07 0.17 -2.29 16 6 C 0.60 14.55 7.79 86.44 0.67 15.23 16 7 O -0.56 -16.81 16.46 -4.32 -0.07 -16.88 16 8 N -0.69 -13.28 5.26 -444.04 -2.33 -15.61 16 9 C 0.12 2.06 4.33 45.52 0.20 2.26 16 10 H 0.10 1.94 7.46 -2.39 -0.02 1.92 16 11 C -0.15 -2.94 7.43 31.12 0.23 -2.71 16 12 C -0.10 -1.90 3.78 -10.27 -0.04 -1.94 16 13 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 14 C 0.07 1.50 5.52 86.30 0.48 1.98 16 15 N -0.68 -21.44 6.13 -517.92 -3.17 -24.61 16 16 C 0.06 2.21 6.17 85.55 0.53 2.74 16 17 C 0.44 21.03 7.82 87.66 0.69 21.72 16 18 O -0.63 -35.32 15.78 -3.08 -0.05 -35.37 16 19 N -0.57 -29.71 5.29 -306.99 -1.62 -31.34 16 20 C -0.34 -19.32 9.68 84.04 0.81 -18.51 16 21 H 0.08 4.77 7.16 -2.92 -0.02 4.75 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 23 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 24 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 C -0.12 -1.58 7.39 31.12 0.23 -1.35 16 29 O -0.17 -3.22 10.40 -5.04 -0.05 -3.27 16 30 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 35 H 0.41 6.69 8.46 -92.70 -0.78 5.91 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.78 7.90 -2.39 -0.02 1.76 16 38 H 0.04 0.83 7.84 -2.39 -0.02 0.81 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.34 11.54 8.43 -89.69 -0.76 10.78 16 41 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.40 19.45 7.90 -92.70 -0.73 18.71 16 44 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 45 H 0.12 1.20 8.10 -2.39 -0.02 1.18 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -75.49 395.83 -0.40 -75.89 By element: Atomic # 1 Polarization: 43.88 SS G_CDS: -1.24 Total: 42.64 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.83 Total: 12.83 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -6.85 Total: -121.03 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -0.17 Total: -55.53 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -75.49 -0.40 -75.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571082477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.530 kcal (2) G-P(sol) polarization free energy of solvation -75.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds