Wall clock time and date at job start Tue Mar 31 2020 20:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50700 * 109.47396 * 2 1 4 4 N 1.34222 * 125.80985 * 265.36527 * 3 2 1 5 5 H 0.97003 * 125.38185 * 359.97438 * 4 3 2 6 6 C 1.37790 * 109.23692 * 180.13141 * 4 3 2 7 7 C 1.46821 * 125.83597 * 179.82027 * 6 4 3 8 8 O 1.21677 * 119.99420 * 150.22094 * 7 6 4 9 9 N 1.34772 * 120.00542 * 330.21668 * 7 6 4 10 10 C 1.46970 * 120.58803 * 2.40954 * 9 7 6 11 11 C 1.53374 * 108.62817 * 235.20053 * 10 9 7 12 12 N 1.46962 * 108.63541 * 310.57458 * 11 10 9 13 13 C 1.36938 * 120.59557 * 235.20459 * 12 11 10 14 14 H 1.08003 * 120.00476 * 154.23722 * 13 12 11 15 15 C 1.38812 * 119.99876 * 334.23303 * 13 12 11 16 16 N 1.31615 * 120.00146 * 340.84798 * 15 13 12 17 17 Si 1.86805 * 119.99701 * 160.84552 * 15 13 12 18 18 H 1.48503 * 109.46847 * 180.02562 * 17 15 13 19 19 H 1.48497 * 109.47346 * 299.99859 * 17 15 13 20 20 H 1.48497 * 109.47305 * 60.00204 * 17 15 13 21 21 C 1.46964 * 118.81456 * 55.48274 * 12 11 10 22 22 C 1.46962 * 120.59743 * 182.37987 * 9 7 6 23 23 C 1.36321 * 108.31947 * 359.55117 * 6 4 3 24 24 C 1.50704 * 126.49741 * 180.22643 * 23 6 4 25 25 C 1.38286 * 125.80537 * 84.99906 * 3 2 1 26 26 C 1.47244 * 126.47510 * 0.07758 * 25 3 2 27 27 O 1.21539 * 120.00030 * 269.98321 * 26 25 3 28 28 O 1.34763 * 120.00301 * 89.97541 * 26 25 3 29 29 H 1.09004 * 109.47515 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47392 * 299.99837 * 1 2 3 31 31 H 1.09003 * 109.47509 * 59.99912 * 1 2 3 32 32 H 1.09003 * 109.47392 * 240.00163 * 2 1 3 33 33 H 1.09003 * 109.47509 * 120.00088 * 2 1 3 34 34 H 1.08998 * 109.60911 * 115.46150 * 10 9 7 35 35 H 1.08995 * 109.61393 * 354.94376 * 10 9 7 36 36 H 1.09003 * 109.61137 * 190.83367 * 11 10 9 37 37 H 1.08996 * 109.61220 * 70.32168 * 11 10 9 38 38 H 0.97001 * 120.00032 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.60910 * 64.26319 * 21 12 11 40 40 H 1.08995 * 109.61671 * 184.77615 * 21 12 11 41 41 H 1.08996 * 109.61068 * 244.54401 * 22 9 7 42 42 H 1.08997 * 109.61153 * 5.05569 * 22 9 7 43 43 H 1.08997 * 109.46794 * 90.00324 * 24 23 6 44 44 H 1.08999 * 109.47349 * 210.00410 * 24 23 6 45 45 H 1.09000 * 109.47419 * 330.00564 * 24 23 6 46 46 H 0.96699 * 117.00086 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3770 2.1319 -1.0849 5 1 2.3431 1.8122 -2.0001 6 6 2.7902 3.3866 -0.6930 7 6 3.2507 4.4577 -1.5853 8 8 3.0813 5.6222 -1.2757 9 7 3.8610 4.1512 -2.7471 10 6 4.0254 2.7499 -3.1587 11 6 5.5129 2.4890 -3.4258 12 7 6.0255 3.5500 -4.3042 13 6 6.6456 3.2385 -5.4847 14 1 6.6478 3.9496 -6.2976 15 6 7.2715 2.0089 -5.6365 16 7 7.6046 1.3045 -4.5758 17 14 7.6411 1.3539 -7.3465 18 1 8.3076 0.0314 -7.2365 19 1 6.3731 1.2070 -8.1051 20 1 8.5361 2.3021 -8.0571 21 6 5.8661 4.9510 -3.8900 22 6 4.3735 5.2122 -3.6255 23 6 2.6925 3.4652 0.6645 24 6 3.0352 4.6574 1.5202 25 6 2.2098 2.2161 1.1172 26 6 1.9467 1.8338 2.5146 27 8 0.8491 2.0248 3.0005 28 8 2.9227 1.2720 3.2548 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.4527 2.5661 -4.0677 35 1 3.6755 2.0916 -2.3635 36 1 5.6329 1.5212 -3.9128 37 1 6.0609 2.4976 -2.4836 38 1 8.0423 0.4454 -4.6819 39 1 6.4386 5.1309 -2.9800 40 1 6.2192 5.6096 -4.6835 41 1 3.8256 5.2036 -4.5677 42 1 4.2536 6.1800 -3.1386 43 1 2.1526 5.2862 1.6373 44 1 3.3714 4.3171 2.4996 45 1 3.8293 5.2313 1.0427 46 1 2.7026 1.0385 4.1670 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605765959.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:02 Heat of formation + Delta-G solvation = -42.157961 kcal Electronic energy + Delta-G solvation = -30038.221141 eV Core-core repulsion = 25929.939300 eV Total energy + Delta-G solvation = -4108.281840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.02376 -39.92156 -39.09429 -36.95255 -36.06861 -34.18001 -34.16330 -32.78111 -31.44779 -30.40927 -29.43981 -27.68303 -26.51933 -24.73776 -24.34792 -23.49007 -22.71895 -21.12977 -20.18246 -19.71831 -19.06806 -18.13130 -17.70211 -16.54386 -16.41318 -15.82181 -15.61432 -15.47899 -15.10119 -14.82847 -14.40265 -14.23636 -13.93920 -13.82048 -13.50749 -13.42363 -13.29139 -13.18595 -13.00473 -12.62621 -12.45173 -12.31937 -12.04923 -11.71373 -11.67615 -11.56770 -11.41753 -11.21663 -10.93259 -10.87897 -10.81018 -10.62080 -10.36723 -10.13418 -9.96555 -9.69333 -8.93919 -8.71976 -8.48009 -8.14340 -6.85924 -5.95644 -3.37861 1.47703 2.03574 2.10373 2.70821 3.09381 3.28065 3.31608 3.34937 3.35687 3.54086 4.34541 4.36511 4.59354 4.71955 4.93819 4.98762 5.06354 5.15686 5.21951 5.29528 5.42777 5.51121 5.55484 5.59219 5.65570 5.69491 5.79233 5.82011 5.87085 5.93124 6.00194 6.07484 6.13585 6.20628 6.28610 6.35436 6.49793 6.64304 6.71371 6.79648 7.04685 7.13092 7.31894 7.61691 7.71280 7.82487 8.23455 8.35848 9.00949 9.64132 10.19717 11.12048 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014757 B = 0.003362 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.959517 B = 8326.820554 C = 9270.146050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.067 4.067 3 C 0.105 3.895 4 N -0.519 5.519 5 H 0.428 0.572 6 C -0.035 4.035 7 C 0.583 3.417 8 O -0.538 6.538 9 N -0.593 5.593 10 C 0.060 3.940 11 C 0.158 3.842 12 N -0.590 5.590 13 C -0.258 4.258 14 H 0.070 0.930 15 C 0.003 3.997 16 N -0.902 5.902 17 Si 0.904 3.096 18 H -0.290 1.290 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.131 3.869 22 C 0.097 3.903 23 C -0.039 4.039 24 C -0.087 4.087 25 C -0.213 4.213 26 C 0.570 3.430 27 O -0.509 6.509 28 O -0.509 6.509 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.026 0.974 38 H 0.257 0.743 39 H 0.026 0.974 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.684 -2.898 10.327 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 C -0.017 4.017 4 N -0.121 5.121 5 H 0.274 0.726 6 C -0.146 4.146 7 C 0.370 3.630 8 O -0.416 6.416 9 N -0.324 5.324 10 C -0.065 4.065 11 C 0.031 3.969 12 N -0.313 5.313 13 C -0.387 4.387 14 H 0.088 0.912 15 C -0.196 4.196 16 N -0.546 5.546 17 Si 0.734 3.266 18 H -0.216 1.216 19 H -0.210 1.210 20 H -0.208 1.208 21 C 0.004 3.996 22 C -0.027 4.027 23 C -0.046 4.046 24 C -0.144 4.144 25 C -0.221 4.221 26 C 0.412 3.588 27 O -0.397 6.397 28 O -0.320 6.320 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -11.836 -2.268 9.971 15.641 hybrid contribution 0.190 -0.890 -0.727 1.164 sum -11.646 -3.157 9.244 15.200 Atomic orbital electron populations 1.21796 0.93595 1.02405 1.03059 1.20324 0.96833 0.88808 1.04516 1.20560 1.01181 0.94432 0.85499 1.42527 1.49202 1.11165 1.09182 0.72578 1.19802 1.14317 0.86380 0.94065 1.17067 0.78309 0.87133 0.80443 1.90785 1.58265 1.18807 1.73771 1.47989 1.56135 1.08536 1.19788 1.23148 1.03578 0.80837 0.98929 1.21186 0.86167 0.95263 0.94251 1.44019 1.66265 0.99213 1.21815 1.19201 1.28494 1.01429 0.89545 0.91249 1.25012 0.97784 0.99560 0.97205 1.70011 1.42541 1.14570 1.27476 0.86339 0.78069 0.78179 0.84037 1.21551 1.20983 1.20760 1.21409 0.91686 0.88214 0.98339 1.22342 0.97247 0.90213 0.92849 1.19377 0.99401 0.94515 0.91343 1.20300 1.02511 0.94121 0.97439 1.18078 1.18711 0.96342 0.88961 1.20011 0.81006 0.72207 0.85574 1.90891 1.24843 1.51077 1.72877 1.84753 1.44119 1.73583 1.29498 0.91582 0.91617 0.92382 0.89768 0.89112 0.91339 0.90955 0.87731 0.95638 0.93349 0.95606 0.91268 0.91647 0.89630 0.90704 0.92083 0.90372 0.73457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.15 0.37 -0.87 16 2 C -0.07 -0.58 6.25 -27.89 -0.17 -0.76 16 3 C 0.11 1.27 6.46 -81.53 -0.53 0.74 16 4 N -0.52 -6.56 4.69 -5.61 -0.03 -6.58 16 5 H 0.43 4.60 6.31 -40.82 -0.26 4.34 16 6 C -0.03 -0.54 6.35 -82.41 -0.52 -1.06 16 7 C 0.58 10.29 7.46 -12.79 -0.10 10.19 16 8 O -0.54 -10.59 15.07 5.21 0.08 -10.51 16 9 N -0.59 -10.35 2.95 -173.71 -0.51 -10.87 16 10 C 0.06 1.00 5.85 -3.59 -0.02 0.98 16 11 C 0.16 3.43 5.54 -3.60 -0.02 3.41 16 12 N -0.59 -13.80 2.97 -171.77 -0.51 -14.31 16 13 C -0.26 -6.60 9.59 -15.06 -0.14 -6.75 16 14 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 15 C 0.00 0.08 4.89 -17.43 -0.09 -0.01 16 16 N -0.90 -24.51 11.13 55.49 0.62 -23.89 16 17 Si 0.90 20.40 29.60 -169.99 -5.03 15.37 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.13 2.62 6.70 -3.37 -0.02 2.60 16 22 C 0.10 1.71 6.60 -3.37 -0.02 1.68 16 23 C -0.04 -0.60 6.20 -104.13 -0.65 -1.24 16 24 C -0.09 -1.22 9.52 36.01 0.34 -0.87 16 25 C -0.21 -2.96 6.01 -105.03 -0.63 -3.59 16 26 C 0.57 7.35 7.60 34.39 0.26 7.61 16 27 O -0.51 -7.58 17.90 -19.30 -0.35 -7.92 16 28 O -0.51 -5.10 13.44 -40.66 -0.55 -5.65 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.04 3.58 -51.93 -0.19 0.85 16 36 H 0.10 2.49 5.85 -51.93 -0.30 2.18 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 1.32 7.92 -51.93 -0.41 0.91 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 45 H 0.08 1.17 7.29 -51.93 -0.38 0.79 16 46 H 0.41 2.01 9.11 45.56 0.42 2.42 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -32.76 376.63 -8.22 -40.98 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.68 Total: 5.66 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -1.94 Total: 12.06 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.43 Total: -55.65 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.81 Total: -24.08 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.76 -8.22 -40.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605765959.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.182 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds