Wall clock time and date at job start Tue Mar 31 2020 20:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50700 * 109.47396 * 2 1 4 4 N 1.34222 * 125.80985 * 265.36527 * 3 2 1 5 5 H 0.97003 * 125.38185 * 359.97438 * 4 3 2 6 6 C 1.37790 * 109.23692 * 180.13141 * 4 3 2 7 7 C 1.46821 * 125.83597 * 179.82027 * 6 4 3 8 8 O 1.21677 * 119.99420 * 150.22094 * 7 6 4 9 9 N 1.34772 * 120.00542 * 330.21668 * 7 6 4 10 10 C 1.46970 * 120.58803 * 2.40954 * 9 7 6 11 11 C 1.53374 * 108.62817 * 235.20053 * 10 9 7 12 12 N 1.46962 * 108.63541 * 310.57458 * 11 10 9 13 13 C 1.36938 * 120.59557 * 235.20459 * 12 11 10 14 14 H 1.08003 * 120.00476 * 154.23722 * 13 12 11 15 15 C 1.38812 * 119.99876 * 334.23303 * 13 12 11 16 16 N 1.31615 * 120.00146 * 340.84798 * 15 13 12 17 17 Si 1.86805 * 119.99701 * 160.84552 * 15 13 12 18 18 H 1.48503 * 109.46847 * 180.02562 * 17 15 13 19 19 H 1.48497 * 109.47346 * 299.99859 * 17 15 13 20 20 H 1.48497 * 109.47305 * 60.00204 * 17 15 13 21 21 C 1.46964 * 118.81456 * 55.48274 * 12 11 10 22 22 C 1.46962 * 120.59743 * 182.37987 * 9 7 6 23 23 C 1.36321 * 108.31947 * 359.55117 * 6 4 3 24 24 C 1.50704 * 126.49741 * 180.22643 * 23 6 4 25 25 C 1.38286 * 125.80537 * 84.99906 * 3 2 1 26 26 C 1.47244 * 126.47510 * 0.07758 * 25 3 2 27 27 O 1.21539 * 120.00030 * 269.98321 * 26 25 3 28 28 O 1.34763 * 120.00301 * 89.97541 * 26 25 3 29 29 H 1.09004 * 109.47515 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47392 * 299.99837 * 1 2 3 31 31 H 1.09003 * 109.47509 * 59.99912 * 1 2 3 32 32 H 1.09003 * 109.47392 * 240.00163 * 2 1 3 33 33 H 1.09003 * 109.47509 * 120.00088 * 2 1 3 34 34 H 1.08998 * 109.60911 * 115.46150 * 10 9 7 35 35 H 1.08995 * 109.61393 * 354.94376 * 10 9 7 36 36 H 1.09003 * 109.61137 * 190.83367 * 11 10 9 37 37 H 1.08996 * 109.61220 * 70.32168 * 11 10 9 38 38 H 0.97001 * 120.00032 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.60910 * 64.26319 * 21 12 11 40 40 H 1.08995 * 109.61671 * 184.77615 * 21 12 11 41 41 H 1.08996 * 109.61068 * 244.54401 * 22 9 7 42 42 H 1.08997 * 109.61153 * 5.05569 * 22 9 7 43 43 H 1.08997 * 109.46794 * 90.00324 * 24 23 6 44 44 H 1.08999 * 109.47349 * 210.00410 * 24 23 6 45 45 H 1.09000 * 109.47419 * 330.00564 * 24 23 6 46 46 H 0.96699 * 117.00086 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3770 2.1319 -1.0849 5 1 2.3431 1.8122 -2.0001 6 6 2.7902 3.3866 -0.6930 7 6 3.2507 4.4577 -1.5853 8 8 3.0813 5.6222 -1.2757 9 7 3.8610 4.1512 -2.7471 10 6 4.0254 2.7499 -3.1587 11 6 5.5129 2.4890 -3.4258 12 7 6.0255 3.5500 -4.3042 13 6 6.6456 3.2385 -5.4847 14 1 6.6478 3.9496 -6.2976 15 6 7.2715 2.0089 -5.6365 16 7 7.6046 1.3045 -4.5758 17 14 7.6411 1.3539 -7.3465 18 1 8.3076 0.0314 -7.2365 19 1 6.3731 1.2070 -8.1051 20 1 8.5361 2.3021 -8.0571 21 6 5.8661 4.9510 -3.8900 22 6 4.3735 5.2122 -3.6255 23 6 2.6925 3.4652 0.6645 24 6 3.0352 4.6574 1.5202 25 6 2.2098 2.2161 1.1172 26 6 1.9467 1.8338 2.5146 27 8 0.8491 2.0248 3.0005 28 8 2.9227 1.2720 3.2548 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.4527 2.5661 -4.0677 35 1 3.6755 2.0916 -2.3635 36 1 5.6329 1.5212 -3.9128 37 1 6.0609 2.4976 -2.4836 38 1 8.0423 0.4454 -4.6819 39 1 6.4386 5.1309 -2.9800 40 1 6.2192 5.6096 -4.6835 41 1 3.8256 5.2036 -4.5677 42 1 4.2536 6.1800 -3.1386 43 1 2.1526 5.2862 1.6373 44 1 3.3714 4.3171 2.4996 45 1 3.8293 5.2313 1.0427 46 1 2.7026 1.0385 4.1670 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605765959.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:01 Heat of formation + Delta-G solvation = -63.152172 kcal Electronic energy + Delta-G solvation = -30039.131518 eV Core-core repulsion = 25929.939300 eV Total energy + Delta-G solvation = -4109.192218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.11169 -41.01261 -40.36133 -38.52804 -36.98930 -35.80132 -35.01929 -34.00753 -33.07832 -31.98387 -30.52932 -29.14178 -27.87806 -25.79932 -25.71201 -24.86543 -24.11230 -22.47131 -21.19171 -21.06013 -20.27877 -19.35488 -18.90873 -18.06546 -17.57773 -17.18378 -16.80166 -16.77167 -16.51635 -16.10989 -15.58071 -15.48208 -15.21904 -15.13989 -15.05217 -14.85432 -14.60763 -14.24313 -14.10672 -13.84799 -13.62097 -13.38892 -13.29711 -13.06827 -12.96127 -12.63602 -12.56788 -12.56007 -12.34868 -12.28737 -12.08360 -11.98221 -11.94880 -11.77779 -11.72627 -11.12319 -10.60715 -10.06403 -9.94959 -9.28370 -8.71663 -7.90459 -5.36151 0.33617 1.04619 1.04993 1.50345 1.51816 1.58659 1.67498 1.76805 2.19250 2.40028 2.52017 3.23921 3.38481 3.48735 3.54740 3.85996 3.93923 4.09328 4.15996 4.19982 4.28324 4.29879 4.40689 4.45958 4.52612 4.57553 4.65830 4.68466 4.70935 4.76551 4.84162 4.97419 4.98438 5.01591 5.12089 5.17355 5.29864 5.39469 5.46502 5.53836 5.54698 5.60521 5.63099 6.14889 6.30663 6.32727 6.97359 7.01563 7.08184 7.76031 8.28721 9.14788 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014757 B = 0.003362 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.959517 B = 8326.820554 C = 9270.146050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C 0.127 3.873 4 N -0.512 5.512 5 H 0.437 0.563 6 C -0.062 4.062 7 C 0.584 3.416 8 O -0.563 6.563 9 N -0.597 5.597 10 C 0.077 3.923 11 C 0.165 3.835 12 N -0.607 5.607 13 C -0.268 4.268 14 H 0.072 0.928 15 C -0.043 4.043 16 N -0.932 5.932 17 Si 0.967 3.033 18 H -0.295 1.295 19 H -0.275 1.275 20 H -0.280 1.280 21 C 0.130 3.870 22 C 0.107 3.893 23 C -0.048 4.048 24 C -0.085 4.085 25 C -0.238 4.238 26 C 0.579 3.421 27 O -0.534 6.534 28 O -0.503 6.503 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.084 0.916 37 H -0.005 1.005 38 H 0.253 0.747 39 H 0.009 0.991 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.971 -4.236 10.054 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C 0.004 3.996 4 N -0.114 5.114 5 H 0.284 0.716 6 C -0.172 4.172 7 C 0.374 3.626 8 O -0.443 6.443 9 N -0.328 5.328 10 C -0.047 4.047 11 C 0.038 3.962 12 N -0.330 5.330 13 C -0.397 4.397 14 H 0.090 0.910 15 C -0.239 4.239 16 N -0.578 5.578 17 Si 0.796 3.204 18 H -0.221 1.221 19 H -0.201 1.201 20 H -0.206 1.206 21 C 0.004 3.996 22 C -0.016 4.016 23 C -0.056 4.056 24 C -0.142 4.142 25 C -0.245 4.245 26 C 0.422 3.578 27 O -0.424 6.424 28 O -0.317 6.317 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.013 0.987 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -13.128 -3.599 9.707 16.719 hybrid contribution 0.633 -0.474 -0.532 0.953 sum -12.495 -4.073 9.175 16.028 Atomic orbital electron populations 1.21765 0.92950 1.03598 1.02132 1.20541 0.97202 0.86634 1.06208 1.21140 0.98518 0.95406 0.84578 1.42423 1.48899 1.10254 1.09868 0.71551 1.19513 1.16572 0.87230 0.93901 1.17295 0.77778 0.87339 0.80223 1.90761 1.59330 1.20037 1.74186 1.48027 1.56208 1.08635 1.19950 1.22950 1.00064 0.81067 1.00668 1.20996 0.88926 0.94101 0.92160 1.44284 1.66472 1.00645 1.21623 1.19524 1.28180 1.01598 0.90423 0.91027 1.25702 0.98096 0.99865 1.00256 1.70159 1.43687 1.14684 1.29229 0.85348 0.77936 0.77019 0.80142 1.22118 1.20072 1.20630 1.21479 0.93431 0.86920 0.97764 1.22186 0.95303 0.90583 0.93571 1.19644 0.99096 0.95323 0.91550 1.20285 1.02060 0.93880 0.97945 1.18309 1.19654 0.96302 0.90281 1.19782 0.80839 0.71834 0.85332 1.90885 1.25884 1.52300 1.73307 1.84696 1.43071 1.72787 1.31122 0.89363 0.93528 0.92321 0.87420 0.88092 0.89715 0.88429 0.89833 0.98734 0.93820 0.97285 0.90465 0.90361 0.89115 0.90589 0.90611 0.91828 0.70789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.89 71.98 0.71 -1.31 16 2 C -0.07 -0.98 6.25 29.85 0.19 -0.79 16 3 C 0.13 2.79 6.46 42.21 0.27 3.06 16 4 N -0.51 -12.02 4.69 -171.65 -0.80 -12.82 16 5 H 0.44 8.34 6.31 -92.71 -0.59 7.75 16 6 C -0.06 -1.88 6.35 40.01 0.25 -1.62 16 7 C 0.58 20.42 7.46 86.49 0.65 21.06 16 8 O -0.56 -22.21 15.07 -4.28 -0.06 -22.28 16 9 N -0.60 -20.43 2.95 -821.71 -2.42 -22.85 16 10 C 0.08 2.49 5.85 86.42 0.51 2.99 16 11 C 0.16 7.21 5.54 86.42 0.48 7.69 16 12 N -0.61 -28.51 2.97 -697.35 -2.07 -30.58 16 13 C -0.27 -13.70 9.59 84.03 0.81 -12.89 16 14 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 15 C -0.04 -2.25 4.89 84.86 0.41 -1.84 16 16 N -0.93 -51.34 11.13 21.65 0.24 -51.10 16 17 Si 0.97 41.78 29.60 68.60 2.03 43.81 16 18 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 C 0.13 5.25 6.70 86.57 0.58 5.83 16 22 C 0.11 3.69 6.60 86.57 0.57 4.26 16 23 C -0.05 -1.45 6.20 -19.54 -0.12 -1.58 16 24 C -0.08 -2.37 9.52 71.24 0.68 -1.70 16 25 C -0.24 -6.29 6.01 -20.13 -0.12 -6.41 16 26 C 0.58 14.04 7.60 70.19 0.53 14.57 16 27 O -0.53 -15.27 17.90 19.71 0.35 -14.91 16 28 O -0.50 -9.02 13.44 -56.74 -0.76 -9.78 16 29 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.32 8.05 -2.39 -0.02 1.30 16 34 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.10 2.64 3.58 -2.39 -0.01 2.64 16 36 H 0.08 4.03 5.85 -2.39 -0.01 4.01 16 37 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.08 2.93 7.92 -2.39 -0.02 2.91 16 41 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.09 3.05 7.00 -2.39 -0.02 3.03 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.08 1.83 8.05 -2.39 -0.02 1.81 16 45 H 0.06 1.95 7.29 -2.39 -0.02 1.93 16 46 H 0.43 3.19 9.11 -74.06 -0.67 2.52 16 Total: -1.00 -71.14 376.63 2.68 -68.46 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -0.22 Total: 20.73 kcal Atomic # 6 Polarization: 24.93 SS G_CDS: 6.40 Total: 31.33 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -5.06 Total: -117.36 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -0.47 Total: -46.97 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -71.14 2.68 -68.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605765959.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.310 kcal (2) G-P(sol) polarization free energy of solvation -71.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds