Wall clock time and date at job start Tue Mar 31 2020 20:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.46917 * 2 1 4 4 C 1.38020 * 119.51720 * 125.28276 * 3 2 1 5 5 C 1.39924 * 119.13463 * 180.22436 * 4 3 2 6 6 C 1.48161 * 120.88926 * 179.77401 * 5 4 3 7 7 O 1.21513 * 120.00373 * 359.71728 * 6 5 4 8 8 N 1.34779 * 119.99703 * 179.72125 * 6 5 4 9 9 C 1.46499 * 119.99916 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.47155 * 180.02562 * 9 8 6 11 11 O 1.42893 * 110.64166 * 66.68766 * 10 9 8 12 12 C 1.55157 * 110.71787 * 190.02670 * 10 9 8 13 13 C 1.54913 * 101.58038 * 153.86386 * 12 10 9 14 14 N 1.47425 * 104.83172 * 322.98898 * 13 12 10 15 15 C 1.36934 * 125.64598 * 204.16741 * 14 13 12 16 16 H 1.08007 * 119.99929 * 179.97438 * 15 14 13 17 17 C 1.38807 * 120.00235 * 359.95374 * 15 14 13 18 18 N 1.31624 * 120.00298 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 120.00223 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46691 * 90.00059 * 19 17 15 21 21 H 1.48494 * 109.47236 * 209.99952 * 19 17 15 22 22 H 1.48498 * 109.46785 * 330.00286 * 19 17 15 23 23 C 1.47016 * 108.70144 * 24.12623 * 14 13 12 24 24 C 1.39606 * 118.21697 * 359.50032 * 5 4 3 25 25 C 1.38852 * 118.94741 * 0.25184 * 24 5 4 26 26 O 1.35686 * 119.62192 * 180.02562 * 25 24 5 27 27 N 1.31886 * 119.51279 * 304.99364 * 3 2 1 28 28 H 1.09007 * 109.46893 * 300.00355 * 1 2 3 29 29 H 1.09000 * 109.46662 * 59.99837 * 1 2 3 30 30 H 1.08994 * 109.47102 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47058 * 240.00023 * 2 1 3 32 32 H 1.09002 * 109.47271 * 119.99718 * 2 1 3 33 33 H 1.08005 * 120.42934 * 359.97438 * 4 3 2 34 34 H 0.96995 * 120.00226 * 0.02562 * 8 6 5 35 35 H 1.09000 * 109.47387 * 59.99782 * 9 8 6 36 36 H 1.09005 * 109.47456 * 299.99839 * 9 8 6 37 37 H 0.96699 * 114.00120 * 300.69790 * 11 10 9 38 38 H 1.09005 * 111.00262 * 271.93496 * 12 10 9 39 39 H 1.08993 * 111.01062 * 35.78843 * 12 10 9 40 40 H 1.08996 * 110.36871 * 204.14723 * 13 12 10 41 41 H 1.08998 * 110.36705 * 81.82672 * 13 12 10 42 42 H 0.96994 * 120.00345 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.88603 * 239.52323 * 23 14 13 44 44 H 1.09004 * 109.88125 * 118.36278 * 23 14 13 45 45 H 1.08000 * 120.52638 * 180.22832 * 24 5 4 46 46 H 0.96699 * 114.00607 * 89.99324 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9131 1.8308 0.9804 5 6 3.3707 3.1530 0.9756 6 6 4.3126 3.6358 2.0123 7 8 4.6942 2.8815 2.8852 8 7 4.7463 4.9116 1.9872 9 6 5.6773 5.3892 3.0126 10 6 6.0076 6.8609 2.7560 11 8 4.8518 7.6781 2.9519 12 6 7.1753 7.3279 3.6647 13 6 7.7747 8.4870 2.8298 14 7 7.6624 8.0406 1.4292 15 6 8.4404 8.4735 0.3888 16 1 8.2787 8.0833 -0.6052 17 6 9.4364 9.4142 0.6116 18 7 9.6336 9.8898 1.8230 19 14 10.4973 10.0054 -0.8079 20 1 9.8636 11.1910 -1.4389 21 1 11.8428 10.3750 -0.2998 22 1 10.6284 8.9204 -1.8131 23 6 6.5776 7.0528 1.3348 24 6 2.9203 4.0036 -0.0357 25 6 2.0382 3.5087 -0.9869 26 8 1.5922 4.3233 -1.9762 27 7 1.6283 2.2528 -0.9402 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.2416 1.1409 1.7438 34 1 4.4414 5.5139 1.2907 35 1 6.5929 4.7990 2.9753 36 1 5.2186 5.2863 3.9961 37 1 4.1074 7.4506 2.3782 38 1 6.8037 7.6888 4.6238 39 1 7.9043 6.5300 3.8052 40 1 8.8200 8.6446 3.0951 41 1 7.2015 9.4012 2.9836 42 1 10.3294 10.5474 1.9786 43 1 6.9692 6.1065 0.9616 44 1 5.7972 7.4218 0.6692 45 1 3.2525 5.0304 -0.0773 46 1 2.1450 4.3178 -2.7696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672008882.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:05 Heat of formation + Delta-G solvation = -91.502691 kcal Electronic energy + Delta-G solvation = -28788.337089 eV Core-core repulsion = 24677.915500 eV Total energy + Delta-G solvation = -4110.421589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.02031 -40.90539 -39.84176 -38.28476 -36.84957 -35.65905 -34.90885 -33.99331 -33.30991 -31.41148 -30.52959 -29.73743 -27.64285 -26.34293 -25.40257 -24.32694 -23.37655 -22.30087 -21.40587 -21.31287 -20.00015 -18.92733 -18.62414 -18.16909 -17.59470 -16.91626 -16.75441 -16.72555 -16.58150 -16.26028 -15.88095 -15.58236 -15.56726 -15.04327 -14.96709 -14.87323 -14.51368 -14.17523 -13.90889 -13.70652 -13.36336 -13.28778 -12.99535 -12.93396 -12.80718 -12.78129 -12.39432 -12.36442 -12.10171 -12.02183 -11.95356 -11.86424 -11.67637 -11.40750 -11.06799 -10.96081 -10.75035 -10.55149 -10.32342 -9.92945 -8.91645 -7.78477 -5.23544 -0.50373 -0.15361 1.46877 1.48480 1.57097 1.63066 1.79578 2.41521 2.48071 2.64157 3.13383 3.27036 3.30424 3.36559 3.48487 3.68418 3.81158 3.83905 3.89766 3.93080 4.12982 4.23544 4.38963 4.44091 4.45558 4.59581 4.62085 4.67890 4.76728 4.78274 4.89635 4.92315 4.97996 5.04108 5.07034 5.15428 5.18879 5.30793 5.45612 5.46267 5.60705 5.79074 6.21480 6.28636 6.53496 6.75867 6.80207 6.90266 7.08444 7.75685 8.39046 9.23498 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016359 B = 0.002533 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.220428 B =11052.667938 C =12005.127204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C 0.150 3.850 4 C -0.129 4.129 5 C -0.075 4.075 6 C 0.562 3.438 7 O -0.559 6.559 8 N -0.707 5.707 9 C 0.117 3.883 10 C 0.124 3.876 11 O -0.554 6.554 12 C -0.120 4.120 13 C 0.158 3.842 14 N -0.622 5.622 15 C -0.239 4.239 16 H 0.084 0.916 17 C -0.068 4.068 18 N -0.949 5.949 19 Si 0.981 3.019 20 H -0.288 1.288 21 H -0.295 1.295 22 H -0.267 1.267 23 C 0.111 3.889 24 C -0.157 4.157 25 C 0.310 3.690 26 O -0.487 6.487 27 N -0.502 5.502 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.158 0.842 34 H 0.411 0.589 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.385 0.615 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.075 0.925 41 H -0.016 1.016 42 H 0.247 0.753 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.165 0.835 46 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.974 -18.204 -3.650 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C 0.012 3.988 4 C -0.150 4.150 5 C -0.086 4.086 6 C 0.349 3.651 7 O -0.438 6.438 8 N -0.360 5.360 9 C -0.007 4.007 10 C 0.082 3.918 11 O -0.361 6.361 12 C -0.159 4.159 13 C 0.033 3.967 14 N -0.348 5.348 15 C -0.367 4.367 16 H 0.102 0.898 17 C -0.261 4.261 18 N -0.599 5.599 19 Si 0.809 3.191 20 H -0.215 1.215 21 H -0.221 1.221 22 H -0.192 1.192 23 C -0.015 4.015 24 C -0.178 4.178 25 C 0.131 3.869 26 O -0.297 6.297 27 N -0.223 5.223 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.175 0.825 34 H 0.249 0.751 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.234 0.766 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.002 0.998 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.182 0.818 46 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -17.145 -18.398 -2.912 25.316 hybrid contribution 1.148 1.255 -1.132 2.043 sum -15.997 -17.143 -4.044 23.793 Atomic orbital electron populations 1.21660 0.93782 1.02812 1.01709 1.20680 0.97214 0.88234 1.05053 1.21412 0.92019 0.96774 0.88579 1.22279 0.97322 0.95424 0.99969 1.20165 0.97736 0.95285 0.95385 1.18280 0.80494 0.81884 0.84404 1.90779 1.58780 1.55999 1.38248 1.45775 1.47003 1.11762 1.31415 1.21912 0.93834 0.92911 0.92026 1.22224 0.86472 0.87989 0.95081 1.86608 1.24258 1.60143 1.65088 1.22909 0.95086 0.99584 0.98274 1.21669 1.00267 0.91932 0.82789 1.44686 1.37129 1.47513 1.05510 1.19450 1.09763 1.18526 0.89007 0.89813 1.25659 1.01101 0.99944 0.99379 1.70045 1.35447 1.33786 1.20578 0.85045 0.77542 0.78200 0.78326 1.21493 1.22104 1.19217 1.22148 0.91063 0.92812 0.95448 1.22429 0.97639 1.02292 0.95482 1.19085 0.90605 0.86463 0.90745 1.84762 1.55722 1.60950 1.28287 1.66850 1.24849 1.04177 1.26402 0.93425 0.93014 0.90253 0.88643 0.87890 0.82465 0.75141 0.90322 0.89581 0.76605 0.89534 0.89321 0.90673 0.99762 0.94313 0.94308 0.94553 0.81795 0.71560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.77 71.98 0.70 -0.96 16 2 C -0.07 -0.85 6.33 29.85 0.19 -0.66 16 3 C 0.15 2.59 6.17 42.50 0.26 2.85 16 4 C -0.13 -2.38 9.27 22.63 0.21 -2.17 16 5 C -0.07 -1.48 5.91 -19.90 -0.12 -1.60 16 6 C 0.56 13.30 7.80 86.88 0.68 13.98 16 7 O -0.56 -16.90 16.44 -3.75 -0.06 -16.96 16 8 N -0.71 -14.89 5.09 -465.65 -2.37 -17.26 16 9 C 0.12 2.96 4.80 86.38 0.41 3.37 16 10 C 0.12 3.81 0.93 -9.60 -0.01 3.80 16 11 O -0.55 -16.39 13.10 -148.98 -1.95 -18.34 16 12 C -0.12 -4.33 6.26 31.99 0.20 -4.13 16 13 C 0.16 7.78 5.88 86.86 0.51 8.29 16 14 N -0.62 -30.93 3.39 -691.99 -2.35 -33.28 16 15 C -0.24 -12.99 10.27 84.03 0.86 -12.13 16 16 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 17 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 18 N -0.95 -56.18 10.09 21.65 0.22 -55.96 16 19 Si 0.98 44.86 29.55 68.60 2.03 46.89 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C 0.11 4.08 5.76 86.73 0.50 4.58 16 24 C -0.16 -2.63 9.55 22.75 0.22 -2.41 16 25 C 0.31 5.69 7.74 84.79 0.66 6.35 16 26 O -0.49 -7.55 13.56 -90.05 -1.22 -8.77 16 27 N -0.50 -9.97 9.87 -297.16 -2.93 -12.90 16 28 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.05 0.76 7.94 -2.39 -0.02 0.74 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 0.80 7.86 -2.39 -0.02 0.79 16 33 H 0.16 2.66 7.62 -2.91 -0.02 2.63 16 34 H 0.41 6.85 5.61 -92.71 -0.52 6.33 16 35 H 0.08 2.13 8.03 -2.39 -0.02 2.11 16 36 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.38 7.83 8.44 -74.06 -0.62 7.20 16 38 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 39 H 0.09 3.00 7.96 -2.39 -0.02 2.98 16 40 H 0.08 4.20 5.87 -2.39 -0.01 4.18 16 41 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 42 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.04 1.39 7.82 -2.38 -0.02 1.37 16 44 H 0.04 1.25 8.07 -2.38 -0.02 1.23 16 45 H 0.16 2.00 6.53 -2.91 -0.02 1.98 16 46 H 0.42 2.51 9.06 -74.06 -0.67 1.84 16 Total: -1.00 -75.74 380.16 -3.67 -79.41 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -0.77 Total: 21.36 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 5.74 Total: 15.80 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -7.43 Total: -119.40 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -3.23 Total: -44.07 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -75.74 -3.67 -79.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672008882.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.090 kcal (2) G-P(sol) polarization free energy of solvation -75.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds