Wall clock time and date at job start Tue Mar 31 2020 20:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50699 * 109.47424 * 2 1 4 4 C 1.38022 * 119.51502 * 125.00035 * 3 2 1 5 5 C 1.39924 * 119.13264 * 180.02562 * 4 3 2 6 6 C 1.48161 * 120.89006 * 179.97438 * 5 4 3 7 7 O 1.21511 * 120.00413 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99729 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99784 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47005 * 179.97438 * 9 8 6 11 11 O 1.42891 * 110.88615 * 303.88100 * 10 9 8 12 12 C 1.55160 * 111.00413 * 179.97438 * 10 9 8 13 13 C 1.54320 * 102.94030 * 206.38626 * 12 10 9 14 14 N 1.47021 * 107.27594 * 22.19672 * 13 12 10 15 15 C 1.36935 * 125.65188 * 181.02027 * 14 13 12 16 16 H 1.08001 * 120.00343 * 185.84198 * 15 14 13 17 17 C 1.38817 * 119.99549 * 5.84432 * 15 14 13 18 18 N 1.31612 * 120.00188 * 7.32076 * 17 15 14 19 19 Si 1.86805 * 119.99659 * 187.31281 * 17 15 14 20 20 H 1.48503 * 109.47016 * 84.99144 * 19 17 15 21 21 H 1.48497 * 109.47010 * 204.99353 * 19 17 15 22 22 H 1.48504 * 109.46939 * 324.99180 * 19 17 15 23 23 C 1.47433 * 108.70105 * 1.28306 * 14 13 12 24 24 C 1.39617 * 118.21727 * 0.25284 * 5 4 3 25 25 C 1.38849 * 118.94615 * 359.50209 * 24 5 4 26 26 O 1.35692 * 119.62078 * 180.22381 * 25 24 5 27 27 N 1.31886 * 119.51249 * 305.02569 * 3 2 1 28 28 H 1.09001 * 109.47043 * 299.99348 * 1 2 3 29 29 H 1.08996 * 109.47613 * 59.99959 * 1 2 3 30 30 H 1.09000 * 109.47019 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46950 * 240.00202 * 2 1 3 32 32 H 1.09000 * 109.47552 * 120.00551 * 2 1 3 33 33 H 1.08001 * 120.43303 * 0.02562 * 4 3 2 34 34 H 0.96996 * 120.00224 * 359.97438 * 8 6 5 35 35 H 1.08991 * 109.47228 * 60.00195 * 9 8 6 36 36 H 1.09000 * 109.46757 * 299.99512 * 9 8 6 37 37 H 0.96697 * 114.00372 * 56.11758 * 11 10 9 38 38 H 1.08994 * 110.71600 * 88.02074 * 12 10 9 39 39 H 1.09003 * 110.87276 * 324.82109 * 12 10 9 40 40 H 1.08997 * 109.88434 * 262.77556 * 13 12 10 41 41 H 1.09005 * 109.87862 * 141.61389 * 13 12 10 42 42 H 0.97005 * 119.99956 * 180.02562 * 18 17 15 43 43 H 1.09000 * 110.36086 * 94.48108 * 23 14 13 44 44 H 1.08996 * 110.36312 * 216.80769 * 23 14 13 45 45 H 1.07995 * 120.52772 * 179.74766 * 24 5 4 46 46 H 0.96696 * 114.00226 * 270.28238 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3695 3.1533 0.9765 6 6 4.3103 3.6364 2.0142 7 8 4.6922 2.8819 2.8868 8 7 4.7425 4.9128 1.9902 9 6 5.6731 5.3904 3.0160 10 6 6.0027 6.8624 2.7600 11 8 6.5236 7.0461 1.4421 12 6 6.9877 7.4058 3.8286 13 6 6.6731 8.9164 3.8522 14 7 5.3126 9.0874 3.3218 15 6 4.6641 10.2823 3.1581 16 1 3.6296 10.2973 2.8484 17 6 5.3366 11.4744 3.3903 18 7 6.6313 11.4644 3.6264 19 14 4.4037 13.0926 3.3673 20 1 3.8026 13.3365 4.7032 21 1 5.3382 14.1980 3.0358 22 1 3.3286 13.0298 2.3448 23 6 4.7598 7.7588 3.0012 24 6 2.9146 4.0056 -0.0314 25 6 2.0371 3.5091 -0.9860 26 8 1.5899 4.3243 -1.9743 27 7 1.6279 2.2529 -0.9399 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.2341 1.1434 1.7494 34 1 4.4379 5.5150 1.2935 35 1 6.5894 4.8014 2.9778 36 1 5.2147 5.2860 3.9994 37 1 5.9424 6.7218 0.7407 38 1 8.0200 7.2314 3.5256 39 1 6.7917 6.9558 4.8019 40 1 7.3854 9.4532 3.2256 41 1 6.7217 9.2892 4.8753 42 1 7.1011 12.2974 3.7890 43 1 4.1728 7.3803 3.8381 44 1 4.1486 7.8097 2.1002 45 1 3.2432 5.0336 -0.0702 46 1 0.7783 4.8013 -1.7537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672008883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:10 Heat of formation + Delta-G solvation = -61.476909 kcal Electronic energy + Delta-G solvation = -28760.157676 eV Core-core repulsion = 24651.038103 eV Total energy + Delta-G solvation = -4109.119573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.22950 -39.82876 -38.50568 -37.61405 -35.27521 -34.57816 -34.08666 -32.63251 -32.13359 -29.96658 -29.58773 -28.35657 -26.09623 -25.27833 -24.25071 -23.26006 -22.59276 -20.82019 -20.21965 -19.95555 -19.19473 -17.79523 -17.38379 -16.92430 -16.45278 -16.09817 -15.93169 -15.57746 -15.25865 -14.73374 -14.68083 -14.65586 -14.27649 -14.23576 -13.85631 -13.54246 -13.33040 -13.02156 -12.78113 -12.45827 -12.28817 -12.15088 -11.98727 -11.85535 -11.75221 -11.44597 -11.10896 -10.89416 -10.81235 -10.64418 -10.37355 -10.27751 -10.15424 -10.06320 -9.83711 -9.76849 -9.52021 -9.28755 -9.25096 -8.65060 -6.86720 -5.73244 -3.10440 0.28054 0.53701 2.50135 2.74819 3.08529 3.37292 3.38605 3.41845 3.44203 3.98178 4.15731 4.41663 4.43427 4.51500 4.53270 4.70208 4.76788 4.84765 4.91612 5.03785 5.05042 5.28911 5.31810 5.34843 5.45290 5.50742 5.55773 5.60007 5.69992 5.73607 5.85881 5.86742 6.01531 6.10005 6.10852 6.30205 6.37879 6.48003 6.52778 7.05751 7.13450 7.40996 7.46841 7.61503 7.81315 7.82678 7.91621 8.23305 9.15915 9.76997 10.41933 11.35749 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.002507 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.603304 B =11168.212845 C =12224.899483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C 0.152 3.848 4 C -0.125 4.125 5 C -0.065 4.065 6 C 0.559 3.441 7 O -0.526 6.526 8 N -0.716 5.716 9 C 0.102 3.898 10 C 0.101 3.899 11 O -0.533 6.533 12 C -0.126 4.126 13 C 0.174 3.826 14 N -0.596 5.596 15 C -0.233 4.233 16 H 0.076 0.924 17 C -0.006 4.006 18 N -0.916 5.916 19 Si 0.912 3.088 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.117 3.883 24 C -0.161 4.161 25 C 0.316 3.684 26 O -0.478 6.478 27 N -0.486 5.486 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.152 0.848 34 H 0.399 0.601 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.361 0.639 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.030 0.970 42 H 0.253 0.747 43 H 0.027 0.973 44 H 0.038 0.962 45 H 0.146 0.854 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.225 -20.900 -6.811 23.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C 0.014 3.986 4 C -0.145 4.145 5 C -0.076 4.076 6 C 0.345 3.655 7 O -0.402 6.402 8 N -0.368 5.368 9 C -0.021 4.021 10 C 0.059 3.941 11 O -0.336 6.336 12 C -0.165 4.165 13 C 0.050 3.950 14 N -0.322 5.322 15 C -0.361 4.361 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.563 5.563 19 Si 0.743 3.257 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.207 1.207 23 C -0.010 4.010 24 C -0.183 4.183 25 C 0.137 3.863 26 O -0.286 6.286 27 N -0.206 5.206 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.170 0.830 34 H 0.235 0.765 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.207 0.793 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.164 0.836 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -8.442 -21.316 -6.763 23.904 hybrid contribution -0.912 1.614 0.107 1.857 sum -9.354 -19.703 -6.656 22.803 Atomic orbital electron populations 1.21683 0.93810 1.02005 1.02743 1.20557 0.97291 0.89617 1.03739 1.21020 0.92622 0.95924 0.88987 1.22139 0.96851 0.95510 1.00029 1.20284 0.97353 0.94616 0.95361 1.18050 0.80772 0.82136 0.84559 1.90793 1.57425 1.55204 1.36811 1.45889 1.47730 1.11538 1.31657 1.22155 0.92981 0.95383 0.91622 1.22789 0.96592 0.90198 0.84559 1.86690 1.47495 1.85147 1.14304 1.22878 0.98312 0.99967 0.95355 1.21229 0.87448 0.88074 0.98275 1.44336 1.13583 0.99950 1.74354 1.18989 0.94196 0.82203 1.40716 0.90579 1.24824 0.95738 0.97689 1.02015 1.69950 1.06524 1.25669 1.54139 0.86141 0.78534 0.83322 0.77739 1.21543 1.21648 1.20741 1.22203 0.93274 0.87856 0.97712 1.22329 1.00404 1.01505 0.94081 1.18936 0.93197 0.87230 0.86918 1.84813 1.46922 1.58036 1.38781 1.66787 1.25570 1.04023 1.24185 0.92763 0.91532 0.92069 0.89538 0.89689 0.82994 0.76522 0.90341 0.89910 0.79347 0.90815 0.90913 0.91386 0.95148 0.93657 0.95533 0.94415 0.83593 0.73797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.77 37.15 0.36 -0.53 16 2 C -0.07 -0.48 6.33 -27.89 -0.18 -0.66 16 3 C 0.15 1.40 6.18 -82.65 -0.51 0.89 16 4 C -0.12 -1.21 9.27 -39.03 -0.36 -1.57 16 5 C -0.07 -0.68 5.91 -104.68 -0.62 -1.30 16 6 C 0.56 6.93 7.80 -12.18 -0.10 6.84 16 7 O -0.53 -8.11 16.44 5.36 0.09 -8.02 16 8 N -0.72 -8.16 5.16 -61.15 -0.32 -8.48 16 9 C 0.10 1.37 4.89 -4.04 -0.02 1.35 16 10 C 0.10 1.64 0.97 -88.35 -0.09 1.56 16 11 O -0.53 -8.92 13.21 -35.23 -0.47 -9.38 16 12 C -0.13 -2.30 6.15 -24.90 -0.15 -2.45 16 13 C 0.17 4.18 5.44 -3.07 -0.02 4.17 16 14 N -0.60 -14.84 3.39 -169.93 -0.58 -15.41 16 15 C -0.23 -6.38 10.26 -15.06 -0.15 -6.53 16 16 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 17 C -0.01 -0.16 5.45 -17.43 -0.10 -0.26 16 18 N -0.92 -26.79 10.46 55.49 0.58 -26.21 16 19 Si 0.91 21.85 29.56 -169.99 -5.02 16.83 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.12 2.23 6.23 -2.40 -0.01 2.22 16 24 C -0.16 -1.48 9.55 -38.84 -0.37 -1.86 16 25 C 0.32 3.13 7.74 -17.17 -0.13 2.99 16 26 O -0.48 -4.11 13.56 -18.78 -0.25 -4.37 16 27 N -0.49 -5.09 9.87 -9.59 -0.09 -5.18 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.48 7.94 -51.93 -0.41 0.07 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.41 7.86 -51.93 -0.41 0.01 16 33 H 0.15 1.35 7.62 -52.49 -0.40 0.95 16 34 H 0.40 3.77 5.42 -40.82 -0.22 3.55 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 37 H 0.36 4.48 7.69 45.56 0.35 4.83 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 40 H 0.07 1.87 6.88 -51.93 -0.36 1.51 16 41 H 0.03 0.79 7.98 -51.93 -0.41 0.37 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.03 0.51 7.99 -51.93 -0.42 0.09 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.15 1.05 6.53 -52.49 -0.34 0.71 16 46 H 0.40 1.53 9.06 45.56 0.41 1.95 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -35.42 380.99 -7.89 -43.31 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.13 Total: 6.32 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.44 Total: 4.85 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.41 Total: -55.28 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.63 Total: -21.77 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.42 -7.89 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672008883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.169 kcal (2) G-P(sol) polarization free energy of solvation -35.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds