Wall clock time and date at job start Tue Mar 31 2020 20:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50699 * 109.47424 * 2 1 4 4 C 1.38022 * 119.51502 * 125.00035 * 3 2 1 5 5 C 1.39924 * 119.13264 * 180.02562 * 4 3 2 6 6 C 1.48161 * 120.89006 * 179.97438 * 5 4 3 7 7 O 1.21511 * 120.00413 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99729 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99784 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47005 * 179.97438 * 9 8 6 11 11 O 1.42891 * 110.88615 * 303.88100 * 10 9 8 12 12 C 1.55160 * 111.00413 * 179.97438 * 10 9 8 13 13 C 1.54320 * 102.94030 * 206.38626 * 12 10 9 14 14 N 1.47021 * 107.27594 * 22.19672 * 13 12 10 15 15 C 1.36935 * 125.65188 * 181.02027 * 14 13 12 16 16 H 1.08001 * 120.00343 * 185.84198 * 15 14 13 17 17 C 1.38817 * 119.99549 * 5.84432 * 15 14 13 18 18 N 1.31612 * 120.00188 * 7.32076 * 17 15 14 19 19 Si 1.86805 * 119.99659 * 187.31281 * 17 15 14 20 20 H 1.48503 * 109.47016 * 84.99144 * 19 17 15 21 21 H 1.48497 * 109.47010 * 204.99353 * 19 17 15 22 22 H 1.48504 * 109.46939 * 324.99180 * 19 17 15 23 23 C 1.47433 * 108.70105 * 1.28306 * 14 13 12 24 24 C 1.39617 * 118.21727 * 0.25284 * 5 4 3 25 25 C 1.38849 * 118.94615 * 359.50209 * 24 5 4 26 26 O 1.35692 * 119.62078 * 180.22381 * 25 24 5 27 27 N 1.31886 * 119.51249 * 305.02569 * 3 2 1 28 28 H 1.09001 * 109.47043 * 299.99348 * 1 2 3 29 29 H 1.08996 * 109.47613 * 59.99959 * 1 2 3 30 30 H 1.09000 * 109.47019 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46950 * 240.00202 * 2 1 3 32 32 H 1.09000 * 109.47552 * 120.00551 * 2 1 3 33 33 H 1.08001 * 120.43303 * 0.02562 * 4 3 2 34 34 H 0.96996 * 120.00224 * 359.97438 * 8 6 5 35 35 H 1.08991 * 109.47228 * 60.00195 * 9 8 6 36 36 H 1.09000 * 109.46757 * 299.99512 * 9 8 6 37 37 H 0.96697 * 114.00372 * 56.11758 * 11 10 9 38 38 H 1.08994 * 110.71600 * 88.02074 * 12 10 9 39 39 H 1.09003 * 110.87276 * 324.82109 * 12 10 9 40 40 H 1.08997 * 109.88434 * 262.77556 * 13 12 10 41 41 H 1.09005 * 109.87862 * 141.61389 * 13 12 10 42 42 H 0.97005 * 119.99956 * 180.02562 * 18 17 15 43 43 H 1.09000 * 110.36086 * 94.48108 * 23 14 13 44 44 H 1.08996 * 110.36312 * 216.80769 * 23 14 13 45 45 H 1.07995 * 120.52772 * 179.74766 * 24 5 4 46 46 H 0.96696 * 114.00226 * 270.28238 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3695 3.1533 0.9765 6 6 4.3103 3.6364 2.0142 7 8 4.6922 2.8819 2.8868 8 7 4.7425 4.9128 1.9902 9 6 5.6731 5.3904 3.0160 10 6 6.0027 6.8624 2.7600 11 8 6.5236 7.0461 1.4421 12 6 6.9877 7.4058 3.8286 13 6 6.6731 8.9164 3.8522 14 7 5.3126 9.0874 3.3218 15 6 4.6641 10.2823 3.1581 16 1 3.6296 10.2973 2.8484 17 6 5.3366 11.4744 3.3903 18 7 6.6313 11.4644 3.6264 19 14 4.4037 13.0926 3.3673 20 1 3.8026 13.3365 4.7032 21 1 5.3382 14.1980 3.0358 22 1 3.3286 13.0298 2.3448 23 6 4.7598 7.7588 3.0012 24 6 2.9146 4.0056 -0.0314 25 6 2.0371 3.5091 -0.9860 26 8 1.5899 4.3243 -1.9743 27 7 1.6279 2.2529 -0.9399 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.2341 1.1434 1.7494 34 1 4.4379 5.5150 1.2935 35 1 6.5894 4.8014 2.9778 36 1 5.2147 5.2860 3.9994 37 1 5.9424 6.7218 0.7407 38 1 8.0200 7.2314 3.5256 39 1 6.7917 6.9558 4.8019 40 1 7.3854 9.4532 3.2256 41 1 6.7217 9.2892 4.8753 42 1 7.1011 12.2974 3.7890 43 1 4.1728 7.3803 3.8381 44 1 4.1486 7.8097 2.1002 45 1 3.2432 5.0336 -0.0702 46 1 0.7783 4.8013 -1.7537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672008883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:09 Heat of formation + Delta-G solvation = -91.912492 kcal Electronic energy + Delta-G solvation = -28761.477462 eV Core-core repulsion = 24651.038103 eV Total energy + Delta-G solvation = -4110.439359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.00823 -40.87081 -39.81412 -38.27804 -36.84425 -35.57654 -34.88210 -34.03510 -33.30358 -31.43159 -30.51814 -29.77330 -27.59381 -26.33570 -25.39276 -24.29744 -23.35612 -22.22956 -21.52682 -21.27211 -19.98915 -18.88426 -18.65841 -18.16599 -17.52261 -16.87306 -16.80727 -16.71117 -16.58309 -16.24777 -15.81451 -15.67227 -15.31409 -15.23191 -15.00515 -14.92276 -14.37056 -14.11520 -13.90810 -13.70077 -13.47788 -13.23652 -12.97963 -12.90391 -12.77569 -12.76377 -12.38357 -12.37293 -12.08967 -12.00784 -11.93907 -11.80888 -11.78785 -11.42518 -11.05774 -10.95425 -10.71043 -10.54350 -10.30499 -9.92429 -8.87764 -7.82537 -5.21402 -0.49413 -0.14497 1.45838 1.48211 1.56001 1.64123 1.79913 2.41994 2.49049 2.65797 3.14533 3.28231 3.32288 3.39570 3.47909 3.63930 3.82348 3.85782 3.92049 3.95917 4.14044 4.24374 4.41746 4.42755 4.46326 4.57530 4.64117 4.68683 4.78989 4.79852 4.90414 4.92845 4.94353 5.04603 5.08123 5.15306 5.20156 5.31650 5.41830 5.46988 5.60124 5.80605 6.21061 6.21878 6.54319 6.77096 6.81242 6.91972 7.08727 7.77014 8.40902 9.25146 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.002507 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.603304 B =11168.212845 C =12224.899483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 C 0.150 3.850 4 C -0.129 4.129 5 C -0.075 4.075 6 C 0.564 3.436 7 O -0.558 6.558 8 N -0.707 5.707 9 C 0.117 3.883 10 C 0.121 3.879 11 O -0.551 6.551 12 C -0.119 4.119 13 C 0.181 3.819 14 N -0.620 5.620 15 C -0.241 4.241 16 H 0.085 0.915 17 C -0.068 4.068 18 N -0.949 5.949 19 Si 0.977 3.023 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.266 1.266 23 C 0.111 3.889 24 C -0.157 4.157 25 C 0.309 3.691 26 O -0.487 6.487 27 N -0.503 5.503 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.158 0.842 34 H 0.410 0.590 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.380 0.620 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.024 0.976 41 H -0.003 1.003 42 H 0.246 0.754 43 H 0.038 0.962 44 H 0.053 0.947 45 H 0.165 0.835 46 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.708 -22.462 -7.564 26.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 C 0.012 3.988 4 C -0.149 4.149 5 C -0.086 4.086 6 C 0.351 3.649 7 O -0.437 6.437 8 N -0.360 5.360 9 C -0.007 4.007 10 C 0.078 3.922 11 O -0.358 6.358 12 C -0.158 4.158 13 C 0.055 3.945 14 N -0.345 5.345 15 C -0.370 4.370 16 H 0.103 0.897 17 C -0.261 4.261 18 N -0.598 5.598 19 Si 0.806 3.194 20 H -0.213 1.213 21 H -0.224 1.224 22 H -0.191 1.191 23 C -0.015 4.015 24 C -0.178 4.178 25 C 0.131 3.869 26 O -0.298 6.298 27 N -0.223 5.223 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.176 0.824 34 H 0.248 0.752 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.229 0.771 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.043 0.957 41 H 0.015 0.985 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.183 0.817 46 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -9.983 -22.897 -7.556 26.097 hybrid contribution -0.511 2.063 0.283 2.145 sum -10.494 -20.834 -7.272 24.435 Atomic orbital electron populations 1.21650 0.93594 1.02813 1.01825 1.20678 0.97405 0.88252 1.04919 1.21403 0.92181 0.96842 0.88383 1.22278 0.96890 0.95464 1.00313 1.20169 0.97692 0.95241 0.95464 1.18241 0.80482 0.81833 0.84364 1.90780 1.58701 1.56029 1.38199 1.45736 1.47189 1.11586 1.31457 1.21864 0.93709 0.92936 0.92200 1.22477 0.94200 0.91381 0.84109 1.86658 1.48500 1.85627 1.14987 1.22768 0.99460 0.95858 0.97673 1.20941 0.86647 0.91623 0.95259 1.44624 1.13974 1.01408 1.74527 1.19428 0.94732 0.83497 1.39383 0.89738 1.25683 0.96596 1.01127 1.02697 1.70191 1.08026 1.25769 1.55788 0.85111 0.77394 0.78997 0.77924 1.21331 1.22407 1.19111 1.22446 0.94672 0.85789 0.98569 1.22441 0.99839 1.02171 0.93381 1.19097 0.93370 0.87339 0.87142 1.84769 1.48234 1.58078 1.38679 1.66850 1.26125 1.04542 1.24809 0.93186 0.92885 0.90416 0.88953 0.87880 0.82437 0.75246 0.89828 0.89652 0.77085 0.89936 0.88417 0.95745 0.98481 0.94504 0.94415 0.92883 0.81728 0.71585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.77 71.98 0.70 -0.82 16 2 C -0.07 -0.84 6.33 29.84 0.19 -0.65 16 3 C 0.15 2.52 6.18 42.50 0.26 2.78 16 4 C -0.13 -2.29 9.27 22.63 0.21 -2.08 16 5 C -0.07 -1.42 5.91 -19.90 -0.12 -1.54 16 6 C 0.56 12.78 7.80 86.88 0.68 13.46 16 7 O -0.56 -16.26 16.44 -3.75 -0.06 -16.32 16 8 N -0.71 -14.18 5.16 -465.66 -2.40 -16.58 16 9 C 0.12 2.81 4.89 86.38 0.42 3.23 16 10 C 0.12 3.67 0.97 -9.32 -0.01 3.67 16 11 O -0.55 -17.31 13.21 -148.98 -1.97 -19.28 16 12 C -0.12 -4.20 6.15 31.78 0.20 -4.01 16 13 C 0.18 8.88 5.44 86.73 0.47 9.35 16 14 N -0.62 -30.82 3.39 -691.52 -2.35 -33.17 16 15 C -0.24 -13.24 10.26 84.04 0.86 -12.38 16 16 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 17 C -0.07 -3.85 5.45 84.86 0.46 -3.38 16 18 N -0.95 -57.49 10.46 21.65 0.23 -57.26 16 19 Si 0.98 45.39 29.56 68.60 2.03 47.41 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 23 C 0.11 4.03 6.23 86.93 0.54 4.57 16 24 C -0.16 -2.54 9.55 22.75 0.22 -2.32 16 25 C 0.31 5.57 7.74 84.78 0.66 6.23 16 26 O -0.49 -7.47 13.56 -90.11 -1.22 -8.69 16 27 N -0.50 -9.81 9.87 -297.15 -2.93 -12.74 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.72 7.94 -2.39 -0.02 0.70 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.10 0.77 7.86 -2.39 -0.02 0.75 16 33 H 0.16 2.56 7.62 -2.91 -0.02 2.53 16 34 H 0.41 6.44 5.42 -92.71 -0.50 5.94 16 35 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 36 H 0.09 2.08 8.08 -2.39 -0.02 2.06 16 37 H 0.38 8.38 7.69 -74.06 -0.57 7.81 16 38 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.10 2.96 8.04 -2.39 -0.02 2.94 16 40 H 0.02 1.40 6.88 -2.39 -0.02 1.38 16 41 H 0.00 -0.16 7.98 -2.38 -0.02 -0.18 16 42 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 43 H 0.04 1.33 7.99 -2.39 -0.02 1.31 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.17 1.89 6.53 -2.91 -0.02 1.87 16 46 H 0.42 2.41 9.06 -74.06 -0.67 1.74 16 Total: -1.00 -77.96 380.99 -3.64 -81.60 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -0.70 Total: 18.93 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 5.74 Total: 16.10 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -7.45 Total: -119.75 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -3.25 Total: -44.29 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -77.96 -3.64 -81.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672008883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.315 kcal (2) G-P(sol) polarization free energy of solvation -77.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds