Wall clock time and date at job start Tue Mar 31 2020 20:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47182 * 2 1 4 4 C 1.34785 * 119.99255 * 297.62923 * 3 2 1 5 5 O 1.21579 * 120.00454 * 354.60909 * 4 3 2 6 6 N 1.34779 * 119.99448 * 174.60822 * 4 3 2 7 7 C 1.46965 * 120.59146 * 184.34799 * 6 4 3 8 8 C 1.53373 * 108.63475 * 235.25065 * 7 6 4 9 9 N 1.46959 * 108.63370 * 310.57903 * 8 7 6 10 10 C 1.36940 * 120.58954 * 235.19946 * 9 8 7 11 11 H 1.08004 * 119.99928 * 148.80023 * 10 9 8 12 12 C 1.38809 * 120.00445 * 328.52818 * 10 9 8 13 13 N 1.31625 * 119.99701 * 348.29591 * 12 10 9 14 14 Si 1.86797 * 120.00142 * 168.29788 * 12 10 9 15 15 H 1.48506 * 109.47295 * 90.00128 * 14 12 10 16 16 H 1.48503 * 109.46954 * 209.99666 * 14 12 10 17 17 H 1.48494 * 109.47234 * 329.99546 * 14 12 10 18 18 C 1.46965 * 118.81795 * 55.47748 * 9 8 7 19 19 C 1.46968 * 120.59434 * 4.37387 * 6 4 3 20 20 C 1.52992 * 109.47646 * 239.99271 * 2 1 3 21 21 C 1.53002 * 117.49603 * 3.75069 * 20 2 1 22 22 C 1.53002 * 117.50124 * 295.09103 * 20 2 1 23 23 C 1.53009 * 109.47014 * 119.99245 * 2 1 3 24 24 F 1.39902 * 109.47120 * 293.92310 * 23 2 1 25 25 F 1.39897 * 109.46719 * 53.91797 * 23 2 1 26 26 F 1.39900 * 109.47031 * 173.92081 * 23 2 1 27 27 H 1.08998 * 109.46812 * 60.00717 * 1 2 3 28 28 H 1.09007 * 109.46742 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47614 * 300.00326 * 1 2 3 30 30 H 0.96998 * 120.00352 * 117.62380 * 3 2 1 31 31 H 1.08993 * 109.60928 * 115.50882 * 7 6 4 32 32 H 1.08997 * 109.60965 * 354.99370 * 7 6 4 33 33 H 1.09003 * 109.61330 * 190.82974 * 8 7 6 34 34 H 1.09008 * 109.61085 * 70.32156 * 8 7 6 35 35 H 0.96999 * 119.99662 * 180.02562 * 13 12 10 36 36 H 1.09006 * 109.60665 * 64.26240 * 18 9 8 37 37 H 1.09000 * 109.60975 * 184.77631 * 18 9 8 38 38 H 1.08996 * 109.60465 * 244.49226 * 19 6 4 39 39 H 1.08998 * 109.61144 * 4.83490 * 19 6 4 40 40 H 1.09000 * 115.54844 * 149.41341 * 20 2 1 41 41 H 1.08999 * 117.50331 * 359.97438 * 21 20 2 42 42 H 1.09000 * 117.49865 * 145.02230 * 21 20 2 43 43 H 1.09002 * 117.49804 * 214.97928 * 22 20 2 44 44 H 1.09001 * 117.49756 * 359.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7325 2.1969 -1.0342 5 8 1.1545 1.7607 -2.0109 6 7 2.0875 3.4962 -0.9857 7 6 1.6996 4.4183 -2.0623 8 6 2.9640 5.0917 -2.6102 9 7 3.7464 5.6115 -1.4800 10 6 4.1080 6.9314 -1.4313 11 1 4.2104 7.4284 -0.4779 12 6 4.3483 7.6292 -2.6070 13 7 4.4564 6.9802 -3.7470 14 14 4.5186 9.4890 -2.5712 15 1 5.9426 9.8518 -2.3570 16 1 4.0530 10.0536 -3.8634 17 1 3.6955 10.0402 -1.4650 18 6 4.1392 4.6883 -0.4062 19 6 2.8700 4.0161 0.1445 20 6 2.0401 -0.7213 -1.2490 21 6 0.9988 -1.2033 -2.2612 22 6 1.7331 -2.2148 -1.3773 23 6 2.0400 -0.7211 1.2494 24 9 1.6911 0.0142 2.3873 25 9 1.4630 -1.9935 1.3215 26 9 3.4320 -0.8434 1.1817 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 2.5472 1.7087 0.7442 31 1 1.0228 5.1764 -1.6685 32 1 1.2063 3.8626 -2.8598 33 1 2.6844 5.9129 -3.2702 34 1 3.5576 4.3621 -3.1613 35 1 4.6248 7.4677 -4.5685 36 1 4.8145 3.9307 -0.8039 37 1 4.6359 5.2431 0.3898 38 1 2.2765 4.7456 0.6954 39 1 3.1471 3.1953 0.8060 40 1 2.9950 -0.3685 -1.6387 41 1 -0.0496 -1.0069 -2.0370 42 1 1.2689 -1.1681 -3.3166 43 1 2.4859 -2.8444 -1.8516 44 1 1.1680 -2.6834 -0.5716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674822607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:28 Heat of formation + Delta-G solvation = -104.723380 kcal Electronic energy + Delta-G solvation = -31381.349771 eV Core-core repulsion = 26728.498150 eV Total energy + Delta-G solvation = -4652.851621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.42129 -47.93390 -47.83092 -40.44875 -38.37248 -36.65382 -34.63094 -33.87896 -31.31280 -30.90944 -29.69929 -27.12520 -26.69141 -23.99166 -23.61177 -22.79267 -22.44238 -21.38938 -20.02833 -19.03384 -18.75548 -18.64782 -18.40302 -17.11483 -16.62178 -16.29638 -15.47906 -15.06048 -14.85860 -14.72088 -14.65782 -14.51887 -14.27649 -14.04593 -13.95925 -13.79158 -13.76394 -13.54471 -13.53157 -13.25084 -12.87383 -12.47811 -12.35405 -12.16947 -11.76262 -11.59688 -11.19129 -11.18054 -10.86833 -10.75411 -10.62888 -10.52320 -10.33599 -10.24368 -10.01276 -9.85792 -9.56409 -9.24765 -8.60213 -8.20922 -6.67719 -5.85723 -3.36238 2.24557 2.64038 3.31538 3.32476 3.38106 3.40085 3.41435 3.77013 3.82815 3.85614 4.13427 4.41956 4.46908 4.60363 4.85289 5.02020 5.11073 5.21413 5.32718 5.33974 5.50504 5.58271 5.67794 5.72444 5.79541 5.86438 5.94153 6.03628 6.06118 6.12261 6.27469 6.31094 6.38381 6.49031 6.67164 6.78426 7.12131 7.28611 7.58629 7.70937 8.15935 8.37450 8.82295 9.11862 9.72578 10.30862 11.21209 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023864 B = 0.003099 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.047018 B = 9033.762865 C = 9557.343338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.194 3.806 3 N -0.745 5.745 4 C 0.712 3.288 5 O -0.581 6.581 6 N -0.611 5.611 7 C 0.105 3.895 8 C 0.159 3.841 9 N -0.590 5.590 10 C -0.259 4.259 11 H 0.066 0.934 12 C 0.006 3.994 13 N -0.902 5.902 14 Si 0.906 3.094 15 H -0.286 1.286 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.132 3.868 19 C 0.094 3.906 20 C -0.157 4.157 21 C -0.138 4.138 22 C -0.193 4.193 23 C 0.454 3.546 24 F -0.180 7.180 25 F -0.171 7.171 26 F -0.174 7.174 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.399 0.601 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.023 0.977 35 H 0.256 0.744 36 H 0.023 0.977 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.181 -16.734 9.228 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 N -0.405 5.405 4 C 0.414 3.586 5 O -0.459 6.459 6 N -0.347 5.347 7 C -0.018 4.018 8 C 0.033 3.967 9 N -0.313 5.313 10 C -0.388 4.388 11 H 0.084 0.916 12 C -0.193 4.193 13 N -0.546 5.546 14 Si 0.735 3.265 15 H -0.213 1.213 16 H -0.215 1.215 17 H -0.204 1.204 18 C 0.004 3.996 19 C -0.031 4.031 20 C -0.177 4.177 21 C -0.175 4.175 22 C -0.230 4.230 23 C 0.399 3.601 24 F -0.161 7.161 25 F -0.152 7.152 26 F -0.155 7.155 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.237 0.763 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.134 0.866 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.565 -16.924 8.363 20.337 hybrid contribution 0.764 1.058 0.671 1.468 sum -6.801 -15.866 9.034 19.483 Atomic orbital electron populations 1.22432 0.91270 1.03720 1.05455 1.20472 0.96406 0.82511 0.90180 1.45145 1.60420 1.10073 1.24870 1.15626 0.79692 0.80965 0.82308 1.90871 1.48278 1.74640 1.32099 1.47274 1.56118 1.06512 1.24765 1.22437 0.99811 0.90774 0.88826 1.21218 0.88241 0.97375 0.89907 1.43947 1.60197 1.05516 1.21641 1.19170 1.41789 0.85318 0.92567 0.91648 1.25191 0.99216 0.98559 0.96299 1.69970 1.51959 1.34310 0.98336 0.86252 0.77932 0.85197 0.77078 1.21312 1.21491 1.20384 1.21357 0.92217 0.93210 0.92816 1.22352 0.95305 0.97595 0.87852 1.22339 1.02210 0.95800 0.97313 1.22950 0.97632 1.00297 0.96605 1.23393 1.04402 0.91152 1.04036 1.20610 0.75982 0.78020 0.85468 1.93196 1.91840 1.76891 1.54177 1.93132 1.84420 1.41260 1.96423 1.93217 1.29928 1.95913 1.96461 0.87789 0.90551 0.91372 0.76334 0.92384 0.89945 0.88184 0.95893 0.93410 0.95905 0.91517 0.91461 0.92234 0.86627 0.87934 0.88533 0.88404 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 6.75 37.16 0.25 -1.59 16 2 C 0.19 2.28 0.48 -131.82 -0.06 2.22 16 3 N -0.74 -9.92 4.90 -52.41 -0.26 -10.18 16 4 C 0.71 11.82 7.71 -86.91 -0.67 11.16 16 5 O -0.58 -10.74 12.48 5.30 0.07 -10.67 16 6 N -0.61 -10.70 2.95 -177.94 -0.52 -11.22 16 7 C 0.11 2.05 6.60 -3.60 -0.02 2.02 16 8 C 0.16 3.71 5.46 -3.60 -0.02 3.69 16 9 N -0.59 -14.15 2.95 -171.76 -0.51 -14.65 16 10 C -0.26 -6.79 9.57 -15.06 -0.14 -6.94 16 11 H 0.07 1.67 7.86 -52.48 -0.41 1.26 16 12 C 0.01 0.17 5.03 -17.43 -0.09 0.09 16 13 N -0.90 -25.47 11.08 55.49 0.62 -24.85 16 14 Si 0.91 20.99 29.57 -169.99 -5.03 15.96 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 C 0.13 2.57 6.70 -3.36 -0.02 2.55 16 19 C 0.09 1.50 6.58 -3.36 -0.02 1.48 16 20 C -0.16 -1.91 3.65 -90.62 -0.33 -2.24 16 21 C -0.14 -1.54 8.77 -26.69 -0.23 -1.78 16 22 C -0.19 -1.89 9.23 -26.69 -0.25 -2.13 16 23 C 0.45 4.98 2.17 37.16 0.08 5.06 16 24 F -0.18 -1.97 16.61 2.25 0.04 -1.93 16 25 F -0.17 -1.75 13.82 2.25 0.03 -1.72 16 26 F -0.17 -2.04 16.87 2.25 0.04 -2.00 16 27 H 0.10 1.32 5.61 -51.93 -0.29 1.03 16 28 H 0.08 0.68 6.70 -51.93 -0.35 0.33 16 29 H 0.07 0.70 7.97 -51.93 -0.41 0.29 16 30 H 0.40 4.82 5.67 -40.82 -0.23 4.59 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.60 6.99 -51.93 -0.36 1.24 16 33 H 0.10 2.59 6.05 -51.93 -0.31 2.27 16 34 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.76 5.59 -51.93 -0.29 0.47 16 40 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.10 1.10 5.82 -51.93 -0.30 0.80 16 42 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.10 0.94 5.82 -51.93 -0.30 0.64 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -29.13 348.57 -7.58 -36.71 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.77 Total: 5.71 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -1.53 Total: 13.59 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.67 Total: -60.90 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.11 Total: -5.65 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.13 -7.58 -36.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674822607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.011 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds